RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 TXNRD1Q16881 649 aa26.86■■□□□ 1.89
PNKP-211ENST00000598020 RTF1Q92541 710 aaKnown RBP26.86■■□□□ 1.89
PNKP-211ENST00000598020 TMPOP42166 694 aaKnown RBP26.85■■□□□ 1.89
PNKP-211ENST00000598020 SLC27A3Q5K4L6 730 aa26.83■■□□□ 1.89
PNKP-211ENST00000598020 ATG3Q9NT62 314 aa26.83■■□□□ 1.89
PNKP-211ENST00000598020 PALLDQ8WX93 1383 aa26.83■■□□□ 1.88
PNKP-211ENST00000598020 ASAP1Q9ULH1 1129 aa26.82■■□□□ 1.88
PNKP-211ENST00000598020 SIPA1L3O60292 1781 aaPredicted RBP26.81■■□□□ 1.88
PNKP-211ENST00000598020 RIPK4P57078 832 aa26.81■■□□□ 1.88
PNKP-211ENST00000598020 TEFQ10587 303 aa26.81■■□□□ 1.88
PNKP-211ENST00000598020 NUP188Q5SRE5 1749 aa26.81■■□□□ 1.88
PNKP-211ENST00000598020 MCM10Q7L590 875 aa26.8■■□□□ 1.88
PNKP-211ENST00000598020 LMOD3Q0VAK6 560 aa26.79■■□□□ 1.88
PNKP-211ENST00000598020 MIER1Q8N108 512 aa26.78■■□□□ 1.88
PNKP-211ENST00000598020 LRRC4BQ9NT99 713 aa26.78■■□□□ 1.88
PNKP-211ENST00000598020 PAPPAQ13219 1627 aa26.77■■□□□ 1.88
PNKP-211ENST00000598020 APAF1O14727 1248 aa26.77■■□□□ 1.88
PNKP-211ENST00000598020 HMGB2P26583 209 aaKnown RBP26.77■■□□□ 1.88
PNKP-211ENST00000598020 DCTN1Q14203 1278 aa26.77■■□□□ 1.88
PNKP-211ENST00000598020 CCNL1Q9UK58 526 aaPredicted RBP26.76■■□□□ 1.87
PNKP-211ENST00000598020 LOC102724428A0A0B4J2F2 783 aa26.75■■□□□ 1.87
PNKP-211ENST00000598020 SIK1P57059 783 aa26.75■■□□□ 1.87
PNKP-211ENST00000598020 FAM9BQ8IZU0 186 aa26.75■■□□□ 1.87
PNKP-211ENST00000598020 RRP7AQ9Y3A4 280 aaKnown RBP26.75■■□□□ 1.87
PNKP-211ENST00000598020 ZNF831Q5JPB2 1677 aa26.75■■□□□ 1.87
PNKP-211ENST00000598020 NCBP3Q53F19 620 aaKnown RBP26.74■■□□□ 1.87
PNKP-211ENST00000598020 TRIM35Q9UPQ4 493 aa26.74■■□□□ 1.87
PNKP-211ENST00000598020 TAF7Q15545 349 aaPredicted RBP26.72■■□□□ 1.87
PNKP-211ENST00000598020 NEUROD2Q15784 382 aa26.72■■□□□ 1.87
PNKP-211ENST00000598020 NBPF14Q5TI25 921 aa26.72■■□□□ 1.87
PNKP-211ENST00000598020 SLC39A6Q13433 755 aa26.71■■□□□ 1.87
PNKP-211ENST00000598020 TAF1LQ8IZX4 1826 aa26.7■■□□□ 1.87
PNKP-211ENST00000598020 BTBD11A6QL63 1104 aa26.7■■□□□ 1.86
PNKP-211ENST00000598020 ZNF790Q6PG37 636 aa26.7■■□□□ 1.86
PNKP-211ENST00000598020 THUMPD2Q9BTF0 503 aaKnown RBP26.7■■□□□ 1.86
PNKP-211ENST00000598020 UBR2Q8IWV8 1755 aa26.7■■□□□ 1.86
PNKP-211ENST00000598020 KCNQ4P56696 695 aa26.69■■□□□ 1.86
PNKP-211ENST00000598020 SLC4A9Q96Q91 983 aa26.69■■□□□ 1.86
PNKP-211ENST00000598020 KCPQ6ZWJ8 1503 aa26.69■■□□□ 1.86
PNKP-211ENST00000598020 CICQ96RK0 1608 aaPredicted RBP26.68■■□□□ 1.86
PNKP-211ENST00000598020 ATP6V1AP38606 617 aa26.68■■□□□ 1.86
PNKP-211ENST00000598020 TTC5Q8N0Z6 440 aa26.68■■□□□ 1.86
PNKP-211ENST00000598020 RBM42Q9BTD8 480 aaKnown RBP26.68■■□□□ 1.86
PNKP-211ENST00000598020 C5P01031 1676 aa26.67■■□□□ 1.86
PNKP-211ENST00000598020 PTCD1O75127 700 aaKnown RBP26.67■■□□□ 1.86
PNKP-211ENST00000598020 CCDC27Q2M243 656 aa26.67■■□□□ 1.86
PNKP-211ENST00000598020 VSIG10Q8N0Z9 540 aa26.67■■□□□ 1.86
PNKP-211ENST00000598020 ANO8Q9HCE9 1232 aaPredicted RBP26.67■■□□□ 1.86
PNKP-211ENST00000598020 BABAM1Q9NWV8 329 aa26.67■■□□□ 1.86
PNKP-211ENST00000598020 AKT1S1Q96B36 256 aa26.66■■□□□ 1.86
PNKP-211ENST00000598020 ITPK1Q13572 414 aa26.65■■□□□ 1.86
PNKP-211ENST00000598020 SLC15A2Q16348 729 aa26.65■■□□□ 1.86
PNKP-211ENST00000598020 STK32BQ9NY57 414 aa26.65■■□□□ 1.86
PNKP-211ENST00000598020 NGEFQ8N5V2 710 aa26.64■■□□□ 1.86
PNKP-211ENST00000598020 KDM3BQ7LBC6 1761 aa26.63■■□□□ 1.85
PNKP-211ENST00000598020 ZNF496Q96IT1 587 aaPredicted RBP26.63■■□□□ 1.85
PNKP-211ENST00000598020 KCNQ3O43525 872 aa26.62■■□□□ 1.85
PNKP-211ENST00000598020 ZNF827Q17R98 1081 aa26.62■■□□□ 1.85
PNKP-211ENST00000598020 LINC00116Q8NCU8 138 aa26.62■■□□□ 1.85
PNKP-211ENST00000598020 FMNL2Q96PY5 1086 aa26.62■■□□□ 1.85
PNKP-211ENST00000598020 C4BP0C0L5 1744 aa26.62■■□□□ 1.85
PNKP-211ENST00000598020 TJP1Q07157 1748 aa26.62■■□□□ 1.85
PNKP-211ENST00000598020 CALD1Q05682 793 aaKnown RBP26.61■■□□□ 1.85
PNKP-211ENST00000598020 COL5A3P25940 1745 aaPredicted RBP26.61■■□□□ 1.85
PNKP-211ENST00000598020 HEG1Q9ULI3 1381 aa26.6■■□□□ 1.85
PNKP-211ENST00000598020 R3HDM1Q15032 1099 aaKnown RBP26.6■■□□□ 1.85
PNKP-211ENST00000598020 MIS18AQ9NYP9 233 aa26.6■■□□□ 1.85
PNKP-211ENST00000598020 CHL1O00533 1208 aa26.59■■□□□ 1.85
PNKP-211ENST00000598020 RC3H1Q5TC82 1133 aaKnown RBP26.59■■□□□ 1.85
PNKP-211ENST00000598020 WWC1Q8IX03 1113 aa26.59■■□□□ 1.85
PNKP-211ENST00000598020 QSER1Q2KHR3 1735 aa26.59■■□□□ 1.85
PNKP-211ENST00000598020 TEX13AQ9BXU3 409 aaPredicted RBP26.58■■□□□ 1.85
PNKP-211ENST00000598020 CNTNAP4Q9C0A0 1308 aa26.58■■□□□ 1.85
PNKP-211ENST00000598020 ZNF853P0CG23 659 aa26.57■■□□□ 1.84
PNKP-211ENST00000598020 DNAJC10Q8IXB1 793 aa26.57■■□□□ 1.84
PNKP-211ENST00000598020 CFAP44Q96MT7 982 aa26.57■■□□□ 1.84
PNKP-211ENST00000598020 TSPYL4Q9UJ04 414 aa26.57■■□□□ 1.84
PNKP-211ENST00000598020 PSDA5PKW4 1024 aaPredicted RBP26.56■■□□□ 1.84
PNKP-211ENST00000598020 EIF4A1P60842 406 aaKnown RBP26.55■■□□□ 1.84
PNKP-211ENST00000598020 IFT57Q9NWB7 429 aa26.55■■□□□ 1.84
PNKP-211ENST00000598020 TFCP2L1Q9NZI6 479 aa26.55■■□□□ 1.84
PNKP-211ENST00000598020 MYH14Q7Z406 1995 aaKnown RBP26.55■■□□□ 1.84
PNKP-211ENST00000598020 SNRPA1P09661 255 aaKnown RBP26.54■■□□□ 1.84
PNKP-211ENST00000598020 CYP19A1P11511 503 aaPredicted RBP26.54■■□□□ 1.84
PNKP-211ENST00000598020 AK7Q96M32 723 aa26.54■■□□□ 1.84
PNKP-211ENST00000598020 TUBGCP6Q96RT7 1819 aa26.53■■□□□ 1.84
PNKP-211ENST00000598020 UBR3Q6ZT12 1888 aa26.53■■□□□ 1.84
PNKP-211ENST00000598020 GNAI1P63096 354 aa26.53■■□□□ 1.84
PNKP-211ENST00000598020 IL16Q14005 1332 aa26.53■■□□□ 1.84
PNKP-211ENST00000598020 SENP3-EIF4A1A0A087X0R7 540 aa26.52■■□□□ 1.84
PNKP-211ENST00000598020 STARD3NLO95772 234 aa26.52■■□□□ 1.84
PNKP-211ENST00000598020 CRKLP46109 303 aaKnown RBP26.52■■□□□ 1.84
PNKP-211ENST00000598020 WDR63Q8IWG1 891 aa26.52■■□□□ 1.84
PNKP-211ENST00000598020 PNPLA7Q6ZV29 1317 aa26.51■■□□□ 1.83
PNKP-211ENST00000598020 FLAD1Q8NFF5 587 aa26.51■■□□□ 1.83
PNKP-211ENST00000598020 CASZ1Q86V15 1759 aa26.51■■□□□ 1.83
PNKP-211ENST00000598020 GIGYF1O75420 1035 aaPredicted RBP26.5■■□□□ 1.83
PNKP-211ENST00000598020 SSFA2P28290 1259 aa26.5■■□□□ 1.83
PNKP-211ENST00000598020 INTS5Q6P9B9 1019 aaKnown RBP26.5■■□□□ 1.83
PNKP-211ENST00000598020 LAS1LQ9Y4W2 734 aaKnown RBP26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms