RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 EN1Q05925 392 aaPredicted RBP13.98□□□□□ -0.17
LIG1-210ENST00000596332 NEUROD2Q15784 382 aa13.98□□□□□ -0.17
LIG1-210ENST00000596332 NCBP3Q53F19 620 aaKnown RBP13.98□□□□□ -0.17
LIG1-210ENST00000596332 LRRC4BQ9NT99 713 aa13.98□□□□□ -0.17
LIG1-210ENST00000596332 SIPA1L3O60292 1781 aaPredicted RBP13.98□□□□□ -0.17
LIG1-210ENST00000596332 KCNQ3O43525 872 aa13.97□□□□□ -0.17
LIG1-210ENST00000596332 CABP4P57796 275 aa13.97□□□□□ -0.17
LIG1-210ENST00000596332 EZH2Q15910 746 aaKnown RBP13.97□□□□□ -0.17
LIG1-210ENST00000596332 SYTL4Q96C24 671 aaPredicted RBP13.97□□□□□ -0.17
LIG1-210ENST00000596332 SLC39A6Q13433 755 aa13.96□□□□□ -0.17
LIG1-210ENST00000596332 TMOD3Q9NYL9 352 aa13.96□□□□□ -0.17
LIG1-210ENST00000596332 ZNF521Q96K83 1311 aa13.95□□□□□ -0.18
LIG1-210ENST00000596332 VIRMAQ69YN4 1812 aaKnown RBP13.95□□□□□ -0.18
LIG1-210ENST00000596332 ZNF853P0CG23 659 aa13.95□□□□□ -0.18
LIG1-210ENST00000596332 KCNQ4P56696 695 aa13.95□□□□□ -0.18
LIG1-210ENST00000596332 CCDC27Q2M243 656 aa13.95□□□□□ -0.18
LIG1-210ENST00000596332 WWC1Q8IX03 1113 aa13.95□□□□□ -0.18
LIG1-210ENST00000596332 PAPPAQ13219 1627 aa13.94□□□□□ -0.18
LIG1-210ENST00000596332 TXNRD1Q16881 649 aa13.94□□□□□ -0.18
LIG1-210ENST00000596332 MIS18AQ9NYP9 233 aa13.94□□□□□ -0.18
LIG1-210ENST00000596332 KCPQ6ZWJ8 1503 aa13.94□□□□□ -0.18
LIG1-210ENST00000596332 LY75O60449 1722 aa13.93□□□□□ -0.18
LIG1-210ENST00000596332 CHL1O00533 1208 aa13.93□□□□□ -0.18
LIG1-210ENST00000596332 TAF7Q15545 349 aaPredicted RBP13.93□□□□□ -0.18
LIG1-210ENST00000596332 SPINK5Q9NQ38 1064 aaPredicted RBP13.93□□□□□ -0.18
LIG1-210ENST00000596332 PALLDQ8WX93 1383 aa13.93□□□□□ -0.18
LIG1-210ENST00000596332 HEG1Q9ULI3 1381 aa13.93□□□□□ -0.18
LIG1-210ENST00000596332 NEFMP07197 916 aa13.92□□□□□ -0.18
LIG1-210ENST00000596332 ITPK1Q13572 414 aa13.92□□□□□ -0.18
LIG1-210ENST00000596332 ZNF790Q6PG37 636 aa13.92□□□□□ -0.18
LIG1-210ENST00000596332 RTF1Q92541 710 aaKnown RBP13.92□□□□□ -0.18
LIG1-210ENST00000596332 RREB1Q92766 1687 aa13.91□□□□□ -0.18
LIG1-210ENST00000596332 RGPD3A6NKT7 1758 aaPredicted RBP13.91□□□□□ -0.18
LIG1-210ENST00000596332 RGPD4Q7Z3J3 1758 aa13.91□□□□□ -0.18
LIG1-210ENST00000596332 BAG6P46379 1132 aa13.91□□□□□ -0.18
LIG1-210ENST00000596332 TEFQ10587 303 aa13.91□□□□□ -0.18
LIG1-210ENST00000596332 ZNF496Q96IT1 587 aaPredicted RBP13.91□□□□□ -0.18
LIG1-210ENST00000596332 LOC102724428A0A0B4J2F2 783 aa13.9□□□□□ -0.18
LIG1-210ENST00000596332 BTBD11A6QL63 1104 aa13.9□□□□□ -0.18
LIG1-210ENST00000596332 SIK1P57059 783 aa13.9□□□□□ -0.18
LIG1-210ENST00000596332 SMARCC1Q92922 1105 aaPredicted RBP13.9□□□□□ -0.18
LIG1-210ENST00000596332 SALL2Q9Y467 1007 aaPredicted RBP13.9□□□□□ -0.18
LIG1-210ENST00000596332 UBR2Q8IWV8 1755 aa13.9□□□□□ -0.18
LIG1-210ENST00000596332 PRAMEF22A3QJZ6 481 aa13.89□□□□□ -0.19
LIG1-210ENST00000596332 LMOD3Q0VAK6 560 aa13.89□□□□□ -0.19
LIG1-210ENST00000596332 SF3B2Q13435 895 aaKnown RBP13.89□□□□□ -0.19
LIG1-210ENST00000596332 AMIGO3Q86WK7 504 aa13.89□□□□□ -0.19
LIG1-210ENST00000596332 ANO8Q9HCE9 1232 aaPredicted RBP13.89□□□□□ -0.19
LIG1-210ENST00000596332 KAT6BQ8WYB5 2073 aa13.89□□□□□ -0.19
LIG1-210ENST00000596332 KDM3BQ7LBC6 1761 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 PTCD1O75127 700 aaKnown RBP13.88□□□□□ -0.19
LIG1-210ENST00000596332 EIF4A1P60842 406 aaKnown RBP13.88□□□□□ -0.19
LIG1-210ENST00000596332 SLC27A3Q5K4L6 730 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 LINC00116Q8NCU8 138 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 AKT1S1Q96B36 256 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 CFAP44Q96MT7 982 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 BABAM1Q9NWV8 329 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 ZNF831Q5JPB2 1677 aa13.88□□□□□ -0.19
LIG1-210ENST00000596332 NUP188Q5SRE5 1749 aa13.87□□□□□ -0.19
LIG1-210ENST00000596332 CICQ96RK0 1608 aaPredicted RBP13.87□□□□□ -0.19
LIG1-210ENST00000596332 ZNF827Q17R98 1081 aa13.87□□□□□ -0.19
LIG1-210ENST00000596332 WDR63Q8IWG1 891 aa13.87□□□□□ -0.19
LIG1-210ENST00000596332 KRT24Q2M2I5 525 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 DNAJC10Q8IXB1 793 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 PIAS4Q8N2W9 510 aaPredicted RBP13.86□□□□□ -0.19
LIG1-210ENST00000596332 NGEFQ8N5V2 710 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 MBIPQ9NS73 344 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 IFT57Q9NWB7 429 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 CCNL1Q9UK58 526 aaPredicted RBP13.86□□□□□ -0.19
LIG1-210ENST00000596332 TJP1Q07157 1748 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 IL16Q14005 1332 aa13.86□□□□□ -0.19
LIG1-210ENST00000596332 CYP19A1P11511 503 aaPredicted RBP13.85□□□□□ -0.19
LIG1-210ENST00000596332 ATP6V1AP38606 617 aa13.85□□□□□ -0.19
LIG1-210ENST00000596332 SMIM5Q71RC9 77 aa13.85□□□□□ -0.19
LIG1-210ENST00000596332 TRMT2AQ8IZ69 625 aaKnown RBP13.85□□□□□ -0.19
LIG1-210ENST00000596332 VSIG10Q8N0Z9 540 aa13.85□□□□□ -0.19
LIG1-210ENST00000596332 RBM42Q9BTD8 480 aaKnown RBP13.85□□□□□ -0.19
LIG1-210ENST00000596332 USP16Q9Y5T5 823 aa13.85□□□□□ -0.19
LIG1-210ENST00000596332 GIGYF1O75420 1035 aaPredicted RBP13.84□□□□□ -0.19
LIG1-210ENST00000596332 INTS5Q6P9B9 1019 aaKnown RBP13.84□□□□□ -0.19
LIG1-210ENST00000596332 CDCA7LQ96GN5 454 aa13.84□□□□□ -0.19
LIG1-210ENST00000596332 TAF1LQ8IZX4 1826 aa13.83□□□□□ -0.2
LIG1-210ENST00000596332 FMNL2Q96PY5 1086 aa13.83□□□□□ -0.2
LIG1-210ENST00000596332 TSPYL4Q9UJ04 414 aa13.83□□□□□ -0.2
LIG1-210ENST00000596332 COL5A3P25940 1745 aaPredicted RBP13.82□□□□□ -0.2
LIG1-210ENST00000596332 GNAI1P63096 354 aa13.82□□□□□ -0.2
LIG1-210ENST00000596332 SLC15A2Q16348 729 aa13.82□□□□□ -0.2
LIG1-210ENST00000596332 RC3H1Q5TC82 1133 aaKnown RBP13.82□□□□□ -0.2
LIG1-210ENST00000596332 C8orf58Q8NAV2 365 aa13.82□□□□□ -0.2
LIG1-210ENST00000596332 TSR2Q969E8 191 aaKnown RBP13.82□□□□□ -0.2
LIG1-210ENST00000596332 PDGFDQ9GZP0 370 aaPredicted RBP13.82□□□□□ -0.2
LIG1-210ENST00000596332 MYH14Q7Z406 1995 aaKnown RBP13.82□□□□□ -0.2
LIG1-210ENST00000596332 NBPF26B4DH59 902 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 SLFN5Q08AF3 891 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 NBPF14Q5TI25 921 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 NBPF10Q6P3W6 841 aaKnown RBP13.81□□□□□ -0.2
LIG1-210ENST00000596332 LRP10Q7Z4F1 713 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 TTC5Q8N0Z6 440 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 NBPF15Q8N660 670 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 TSPYL6Q8N831 410 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms