RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 ERVV-2B6SEH9 535 aa14.14□□□□□ -0.15
USE1-204ENST00000594399 E9PSI1 815 aa14.14□□□□□ -0.15
USE1-204ENST00000594399 BAG6P46379 1132 aa14.14□□□□□ -0.15
USE1-204ENST00000594399 SLC52A2Q9HAB3 445 aa14.14□□□□□ -0.15
USE1-204ENST00000594399 PAPPAQ13219 1627 aa14.14□□□□□ -0.15
USE1-204ENST00000594399 CABP4P57796 275 aa14.13□□□□□ -0.15
USE1-204ENST00000594399 GNAI1P63096 354 aa14.13□□□□□ -0.15
USE1-204ENST00000594399 FAM182BQ5T319 152 aa14.13□□□□□ -0.15
USE1-204ENST00000594399 MYH16Q9H6N6 1097 aa14.13□□□□□ -0.15
USE1-204ENST00000594399 DEFB132Q7Z7B7 95 aa14.12□□□□□ -0.15
USE1-204ENST00000594399 CFAP44Q96MT7 982 aa14.12□□□□□ -0.15
USE1-204ENST00000594399 TMOD3Q9NYL9 352 aa14.12□□□□□ -0.15
USE1-204ENST00000594399 LAS1LQ9Y4W2 734 aaKnown RBP14.12□□□□□ -0.15
USE1-204ENST00000594399 SBF2Q86WG5 1849 aa14.11□□□□□ -0.15
USE1-204ENST00000594399 ZNF853P0CG23 659 aa14.11□□□□□ -0.15
USE1-204ENST00000594399 SLFN5Q08AF3 891 aa14.11□□□□□ -0.15
USE1-204ENST00000594399 TAF7Q15545 349 aaPredicted RBP14.11□□□□□ -0.15
USE1-204ENST00000594399 CDCA7LQ96GN5 454 aa14.11□□□□□ -0.15
USE1-204ENST00000594399 SPINK5Q9NQ38 1064 aaPredicted RBP14.11□□□□□ -0.15
USE1-204ENST00000594399 BABAM1Q9NWV8 329 aa14.11□□□□□ -0.15
USE1-204ENST00000594399 FANCIQ9NVI1 1328 aa14.11□□□□□ -0.15
USE1-204ENST00000594399 BTBD11A6QL63 1104 aa14.1□□□□□ -0.15
USE1-204ENST00000594399 CHL1O00533 1208 aa14.1□□□□□ -0.15
USE1-204ENST00000594399 NFATC2IPQ8NCF5 419 aa14.1□□□□□ -0.15
USE1-204ENST00000594399 SYTL4Q96C24 671 aaPredicted RBP14.1□□□□□ -0.15
USE1-204ENST00000594399 ACSBG1Q96GR2 724 aa14.1□□□□□ -0.15
USE1-204ENST00000594399 TSPYL4Q9UJ04 414 aa14.1□□□□□ -0.15
USE1-204ENST00000594399 UBR2Q8IWV8 1755 aa14.09□□□□□ -0.15
USE1-204ENST00000594399 PRIM1P49642 420 aaKnown RBP14.09□□□□□ -0.15
USE1-204ENST00000594399 TSR2Q969E8 191 aaKnown RBP14.09□□□□□ -0.15
USE1-204ENST00000594399 MBIPQ9NS73 344 aa14.09□□□□□ -0.15
USE1-204ENST00000594399 BTAF1O14981 1849 aa14.08□□□□□ -0.15
USE1-204ENST00000594399 TRIM37O94972 964 aa14.08□□□□□ -0.16
USE1-204ENST00000594399 DUSP27Q5VZP5 1158 aa14.08□□□□□ -0.16
USE1-204ENST00000594399 PIGBQ92521 554 aa14.08□□□□□ -0.16
USE1-204ENST00000594399 KCPQ6ZWJ8 1503 aa14.07□□□□□ -0.16
USE1-204ENST00000594399 TRMT2AQ8IZ69 625 aaKnown RBP14.07□□□□□ -0.16
USE1-204ENST00000594399 TTC5Q8N0Z6 440 aa14.07□□□□□ -0.16
USE1-204ENST00000594399 MIS18AQ9NYP9 233 aa14.07□□□□□ -0.16
USE1-204ENST00000594399 EN1Q05925 392 aaPredicted RBP14.06□□□□□ -0.16
USE1-204ENST00000594399 ZNF790Q6PG37 636 aa14.06□□□□□ -0.16
USE1-204ENST00000594399 TNS1Q9HBL0 1735 aaKnown RBP14.05□□□□□ -0.16
USE1-204ENST00000594399 KCNQ2O43526 872 aa14.05□□□□□ -0.16
USE1-204ENST00000594399 APBA3O96018 575 aa14.05□□□□□ -0.16
USE1-204ENST00000594399 SLC39A6Q13433 755 aa14.05□□□□□ -0.16
USE1-204ENST00000594399 LAMB4A4D0S4 1761 aa14.04□□□□□ -0.16
USE1-204ENST00000594399 KCNQ3O43525 872 aa14.04□□□□□ -0.16
USE1-204ENST00000594399 BCL11BQ9C0K0 894 aaPredicted RBP14.04□□□□□ -0.16
USE1-204ENST00000594399 ATG3Q9NT62 314 aa14.04□□□□□ -0.16
USE1-204ENST00000594399 C5P01031 1676 aa14.04□□□□□ -0.16
USE1-204ENST00000594399 EIF4A1P60842 406 aaKnown RBP14.03□□□□□ -0.16
USE1-204ENST00000594399 EXOSC9Q06265 439 aaKnown RBP14.03□□□□□ -0.16
USE1-204ENST00000594399 ASAP1Q9ULH1 1129 aa14.03□□□□□ -0.16
USE1-204ENST00000594399 PALLDQ8WX93 1383 aa14.03□□□□□ -0.16
USE1-204ENST00000594399 CICQ96RK0 1608 aaPredicted RBP14.03□□□□□ -0.16
USE1-204ENST00000594399 KAT6BQ8WYB5 2073 aa14.03□□□□□ -0.16
USE1-204ENST00000594399 PTF1AQ7RTS3 328 aa14.02□□□□□ -0.17
USE1-204ENST00000594399 SMARCC1Q92922 1105 aaPredicted RBP14.02□□□□□ -0.17
USE1-204ENST00000594399 FMNL2Q96PY5 1086 aa14.02□□□□□ -0.17
USE1-204ENST00000594399 LY75O60449 1722 aa14.01□□□□□ -0.17
USE1-204ENST00000594399 ZNF831Q5JPB2 1677 aa14.01□□□□□ -0.17
USE1-204ENST00000594399 HEG1Q9ULI3 1381 aa14.01□□□□□ -0.17
USE1-204ENST00000594399 SOS1Q07889 1333 aaPredicted RBP14.01□□□□□ -0.17
USE1-204ENST00000594399 CENPBP07199 599 aaPredicted RBP14.01□□□□□ -0.17
USE1-204ENST00000594399 EZH2Q15910 746 aaKnown RBP14.01□□□□□ -0.17
USE1-204ENST00000594399 ZNF496Q96IT1 587 aaPredicted RBP14.01□□□□□ -0.17
USE1-204ENST00000594399 CAMKK2Q96RR4 588 aa14.01□□□□□ -0.17
USE1-204ENST00000594399 RGPD3A6NKT7 1758 aaPredicted RBP14.01□□□□□ -0.17
USE1-204ENST00000594399 RGPD4Q7Z3J3 1758 aa14.01□□□□□ -0.17
USE1-204ENST00000594399 TJP1Q07157 1748 aa14.01□□□□□ -0.17
USE1-204ENST00000594399 PTCD1O75127 700 aaKnown RBP14□□□□□ -0.17
USE1-204ENST00000594399 HOXB7P09629 217 aa14□□□□□ -0.17
USE1-204ENST00000594399 CT47B1P0C2W7 299 aaPredicted RBP14□□□□□ -0.17
USE1-204ENST00000594399 KRT24Q2M2I5 525 aa14□□□□□ -0.17
USE1-204ENST00000594399 TWISTNBQ3B726 338 aaPredicted RBP14□□□□□ -0.17
USE1-204ENST00000594399 C8orf58Q8NAV2 365 aa14□□□□□ -0.17
USE1-204ENST00000594399 ELL2O00472 640 aaPredicted RBP13.98□□□□□ -0.17
USE1-204ENST00000594399 SNRPA1P09661 255 aaKnown RBP13.98□□□□□ -0.17
USE1-204ENST00000594399 VSIG10Q8N0Z9 540 aa13.98□□□□□ -0.17
USE1-204ENST00000594399 TSPYL6Q8N831 410 aa13.98□□□□□ -0.17
USE1-204ENST00000594399 RBM42Q9BTD8 480 aaKnown RBP13.98□□□□□ -0.17
USE1-204ENST00000594399 SRCAPQ6ZRS2 3230 aa13.98□□□□□ -0.17
USE1-204ENST00000594399 LOC102724428A0A0B4J2F2 783 aa13.97□□□□□ -0.17
USE1-204ENST00000594399 GIGYF1O75420 1035 aaPredicted RBP13.97□□□□□ -0.17
USE1-204ENST00000594399 SIK1P57059 783 aa13.97□□□□□ -0.17
USE1-204ENST00000594399 ZNF428Q96B54 188 aa13.97□□□□□ -0.17
USE1-204ENST00000594399 COL5A3P25940 1745 aaPredicted RBP13.97□□□□□ -0.17
USE1-204ENST00000594399 PLSCR1O15162 318 aa13.96□□□□□ -0.17
USE1-204ENST00000594399 VAMP4O75379 141 aa13.96□□□□□ -0.17
USE1-204ENST00000594399 HDGFL1Q5TGJ6 251 aa13.96□□□□□ -0.17
USE1-204ENST00000594399 NBPF14Q5TI25 921 aa13.96□□□□□ -0.17
USE1-204ENST00000594399 PRAMEF22A3QJZ6 481 aa13.95□□□□□ -0.18
USE1-204ENST00000594399 PSDA5PKW4 1024 aaPredicted RBP13.95□□□□□ -0.18
USE1-204ENST00000594399 SLC4A9Q96Q91 983 aa13.95□□□□□ -0.18
USE1-204ENST00000594399 TEX13AQ9BXU3 409 aaPredicted RBP13.95□□□□□ -0.18
USE1-204ENST00000594399 CHMP4AQ9BY43 222 aa13.95□□□□□ -0.18
USE1-204ENST00000594399 ATP6V1AP38606 617 aa13.94□□□□□ -0.18
USE1-204ENST00000594399 R3HDM1Q15032 1099 aaKnown RBP13.94□□□□□ -0.18
USE1-204ENST00000594399 CCDC30Q5VVM6 783 aa13.94□□□□□ -0.18
USE1-204ENST00000594399 DNAJC10Q8IXB1 793 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms