RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 MRPL50Q8N5N7 158 aaKnown RBP9.27□□□□□ -0.93
ZNF540-206ENST00000589117 MBIPQ9NS73 344 aa9.27□□□□□ -0.93
ZNF540-206ENST00000589117 USP19O94966 1318 aa9.27□□□□□ -0.93
ZNF540-206ENST00000589117 ACEP12821 1306 aa9.27□□□□□ -0.93
ZNF540-206ENST00000589117 TRAK2O60296 914 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 SEC24BO95487 1268 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 FLIIQ13045 1269 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 THEMISQ8N1K5 641 aaPredicted RBP9.26□□□□□ -0.93
ZNF540-206ENST00000589117 TTC21AQ8NDW8 1320 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 ROBO2Q9HCK4 1378 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 ZBTB7BO15156 539 aaPredicted RBP9.26□□□□□ -0.93
ZNF540-206ENST00000589117 CD44P16070 742 aaKnown RBP9.26□□□□□ -0.93
ZNF540-206ENST00000589117 GIGYF2Q6Y7W6 1299 aaKnown RBP9.26□□□□□ -0.93
ZNF540-206ENST00000589117 CHD1LQ86WJ1 897 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 MICALL2Q8IY33 904 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 DDX12PQ92771 950 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 TBX22Q9Y458 520 aa9.26□□□□□ -0.93
ZNF540-206ENST00000589117 KIF24Q5T7B8 1368 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 SULT6B1Q6IMI4 303 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 PLPP6Q8IY26 295 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 C22orf23Q9BZE7 217 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 ITSN1Q15811 1721 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 MON2Q7Z3U7 1717 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 PIP4P2Q8N4L2 257 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 UPF1Q92900 1129 aaKnown RBP eCLIP9.25□□□□□ -0.93
ZNF540-206ENST00000589117 POM121Q96HA1 1249 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 THUMPD2Q9BTF0 503 aaKnown RBP9.25□□□□□ -0.93
ZNF540-206ENST00000589117 PRR36Q9H6K5 1346 aa9.25□□□□□ -0.93
ZNF540-206ENST00000589117 PIK3R4Q99570 1358 aa9.24□□□□□ -0.93
ZNF540-206ENST00000589117 UBR1Q8IWV7 1749 aa9.24□□□□□ -0.93
ZNF540-206ENST00000589117 ELL2O00472 640 aaPredicted RBP9.24□□□□□ -0.93
ZNF540-206ENST00000589117 EIF4A2Q14240 407 aaKnown RBP9.24□□□□□ -0.93
ZNF540-206ENST00000589117 MCM6Q14566 821 aa9.24□□□□□ -0.93
ZNF540-206ENST00000589117 PTCH1Q13635 1447 aa9.24□□□□□ -0.93
ZNF540-206ENST00000589117 ADAMTS13Q76LX8 1427 aa9.24□□□□□ -0.93
ZNF540-206ENST00000589117 KIF13AQ9H1H9 1805 aa9.24□□□□□ -0.93
ZNF540-206ENST00000589117 TTLL13PA6NNM8 815 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 PDIA4P13667 645 aaKnown RBP9.23□□□□□ -0.93
ZNF540-206ENST00000589117 LTKP29376 864 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 ANKRD45Q5TZF3 282 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 NGDNQ8NEJ9 315 aaKnown RBP9.23□□□□□ -0.93
ZNF540-206ENST00000589117 RTF1Q92541 710 aaKnown RBP9.23□□□□□ -0.93
ZNF540-206ENST00000589117 AMOTL2Q9Y2J4 779 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 C2orf72A6NCS6 295 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 ABCC4O15439 1325 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 C3P01024 1663 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 USP6P35125 1406 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 AKAP12Q02952 1782 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 BMP2KLQ5H9B9 411 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 TSPYL6Q8N831 410 aa9.23□□□□□ -0.93
ZNF540-206ENST00000589117 MFAP1P55081 439 aaKnown RBP9.22□□□□□ -0.93
ZNF540-206ENST00000589117 SLC26A8Q96RN1 970 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 LNPKQ9C0E8 428 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 USP31Q70CQ4 1352 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 KIAA0232Q92628 1395 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 PTPRCP08575 1304 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 CHL1O00533 1208 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 C8orf58Q8NAV2 365 aa9.22□□□□□ -0.93
ZNF540-206ENST00000589117 AMPHP49418 695 aa9.21□□□□□ -0.93
ZNF540-206ENST00000589117 HSCBQ8IWL3 235 aa9.21□□□□□ -0.93
ZNF540-206ENST00000589117 OVOS2A0A0J9YW53 1432 aa9.21□□□□□ -0.94
ZNF540-206ENST00000589117 OVOS2Q6IE36 1432 aa9.21□□□□□ -0.94
ZNF540-206ENST00000589117 HIC1Q14526 733 aa9.21□□□□□ -0.94
ZNF540-206ENST00000589117 TMC2Q8TDI7 906 aa9.21□□□□□ -0.94
ZNF540-206ENST00000589117 ARHGEF10O15013 1369 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 FAM83GA6ND36 823 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 A6NJR5 290 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 FRAT2O75474 233 aaPredicted RBP9.2□□□□□ -0.94
ZNF540-206ENST00000589117 HSP90AB2PQ58FF8 381 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 INTS3Q68E01 1043 aaKnown RBP9.2□□□□□ -0.94
ZNF540-206ENST00000589117 RPAP2Q8IXW5 612 aaPredicted RBP9.2□□□□□ -0.94
ZNF540-206ENST00000589117 GAS2L2Q8NHY3 880 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 TBC1D2Q9BYX2 928 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 GOPCQ9HD26 462 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 FLT4P35916 1363 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 HTATSF1O43719 755 aaKnown RBP9.2□□□□□ -0.94
ZNF540-206ENST00000589117 MAP3K9P80192 1104 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 DCTN1Q14203 1278 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 OXER1Q8TDS5 423 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 PHOX2BQ99453 314 aa9.2□□□□□ -0.94
ZNF540-206ENST00000589117 SLKQ9H2G2 1235 aaPredicted RBP9.2□□□□□ -0.94
ZNF540-206ENST00000589117 SBNO1A3KN83 1393 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 SLIT1O75093 1534 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 CEBPAP49715 358 aaPredicted RBP9.19□□□□□ -0.94
ZNF540-206ENST00000589117 RBM25P49756 843 aaKnown RBP9.19□□□□□ -0.94
ZNF540-206ENST00000589117 NRKQ7Z2Y5 1582 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 HMMRO75330 724 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 PTGDRQ13258 359 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 AEBP1Q8IUX7 1158 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 PDCD7Q8N8D1 485 aaKnown RBP9.19□□□□□ -0.94
ZNF540-206ENST00000589117 CHMP4AQ9BY43 222 aa9.19□□□□□ -0.94
ZNF540-206ENST00000589117 DIP2AQ14689 1571 aa9.18□□□□□ -0.94
ZNF540-206ENST00000589117 KIF3CO14782 793 aa9.18□□□□□ -0.94
ZNF540-206ENST00000589117 CASC1Q6TDU7 716 aa9.18□□□□□ -0.94
ZNF540-206ENST00000589117 BMP2KQ9NSY1 1161 aaPredicted RBP9.18□□□□□ -0.94
ZNF540-206ENST00000589117 CHMP5Q9NZZ3 219 aa9.18□□□□□ -0.94
ZNF540-206ENST00000589117 ARHGAP23Q9P227 1491 aa9.18□□□□□ -0.94
ZNF540-206ENST00000589117 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.18□□□□□ -0.94
ZNF540-206ENST00000589117 MAP3K19Q56UN5 1328 aa9.18□□□□□ -0.94
ZNF540-206ENST00000589117 SSH2Q76I76 1423 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms