RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 TEFQ10587 303 aa14.06□□□□□ -0.16
SMARCA4-213ENST00000587988 CCDC27Q2M243 656 aa14.05□□□□□ -0.16
SMARCA4-213ENST00000587988 WWC1Q8IX03 1113 aa14.05□□□□□ -0.16
SMARCA4-213ENST00000587988 ASAP1Q9ULH1 1129 aa14.05□□□□□ -0.16
SMARCA4-213ENST00000587988 APBA3O96018 575 aa14.04□□□□□ -0.16
SMARCA4-213ENST00000587988 SLC39A6Q13433 755 aa14.04□□□□□ -0.16
SMARCA4-213ENST00000587988 NCBP3Q53F19 620 aaKnown RBP14.04□□□□□ -0.16
SMARCA4-213ENST00000587988 ATG3Q9NT62 314 aa14.04□□□□□ -0.16
SMARCA4-213ENST00000587988 MIS18AQ9NYP9 233 aa14.04□□□□□ -0.16
SMARCA4-213ENST00000587988 BTBD11A6QL63 1104 aa14.03□□□□□ -0.16
SMARCA4-213ENST00000587988 KCNQ3O43525 872 aa14.03□□□□□ -0.16
SMARCA4-213ENST00000587988 TAF7Q15545 349 aaPredicted RBP14.03□□□□□ -0.16
SMARCA4-213ENST00000587988 SF3B2Q13435 895 aaKnown RBP14.02□□□□□ -0.17
SMARCA4-213ENST00000587988 DEFB132Q7Z7B7 95 aa14.02□□□□□ -0.17
SMARCA4-213ENST00000587988 CCDC125Q86Z20 511 aa14.02□□□□□ -0.17
SMARCA4-213ENST00000587988 PAPPAQ13219 1627 aa14.01□□□□□ -0.17
SMARCA4-213ENST00000587988 ZNF521Q96K83 1311 aa14.01□□□□□ -0.17
SMARCA4-213ENST00000587988 HNRNPUQ00839 825 aaKnown RBP eCLIP14.01□□□□□ -0.17
SMARCA4-213ENST00000587988 EN1Q05925 392 aaPredicted RBP14.01□□□□□ -0.17
SMARCA4-213ENST00000587988 NGEFQ8N5V2 710 aa14.01□□□□□ -0.17
SMARCA4-213ENST00000587988 LAS1LQ9Y4W2 734 aaKnown RBP14.01□□□□□ -0.17
SMARCA4-213ENST00000587988 PALLDQ8WX93 1383 aa14□□□□□ -0.17
SMARCA4-213ENST00000587988 PLSCR1O15162 318 aa14□□□□□ -0.17
SMARCA4-213ENST00000587988 ZNF853P0CG23 659 aa14□□□□□ -0.17
SMARCA4-213ENST00000587988 ZNF790Q6PG37 636 aa14□□□□□ -0.17
SMARCA4-213ENST00000587988 PROM2Q8N271 834 aa14□□□□□ -0.17
SMARCA4-213ENST00000587988 KDM3BQ7LBC6 1761 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 LY75O60449 1722 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 CHL1O00533 1208 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 BAG6P46379 1132 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 KCNQ4P56696 695 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 EZH2Q15910 746 aaKnown RBP13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 WDR63Q8IWG1 891 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 SMARCC1Q92922 1105 aaPredicted RBP13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 CFAP44Q96MT7 982 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 SLC4A9Q96Q91 983 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 CAMKK2Q96RR4 588 aa13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 SPINK5Q9NQ38 1064 aaPredicted RBP13.99□□□□□ -0.17
SMARCA4-213ENST00000587988 PTCD1O75127 700 aaKnown RBP13.98□□□□□ -0.17
SMARCA4-213ENST00000587988 RBM42Q9BTD8 480 aaKnown RBP13.98□□□□□ -0.17
SMARCA4-213ENST00000587988 IFT57Q9NWB7 429 aa13.98□□□□□ -0.17
SMARCA4-213ENST00000587988 TSPYL4Q9UJ04 414 aa13.98□□□□□ -0.17
SMARCA4-213ENST00000587988 KCPQ6ZWJ8 1503 aa13.98□□□□□ -0.17
SMARCA4-213ENST00000587988 UBR2Q8IWV8 1755 aa13.98□□□□□ -0.17
SMARCA4-213ENST00000587988 LOC102724428A0A0B4J2F2 783 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 SIK1P57059 783 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 CALD1Q05682 793 aaKnown RBP13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 TXNRD1Q16881 649 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 TTC5Q8N0Z6 440 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 ZNF496Q96IT1 587 aaPredicted RBP13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 MBIPQ9NS73 344 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 LRRC4BQ9NT99 713 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 BABAM1Q9NWV8 329 aa13.97□□□□□ -0.17
SMARCA4-213ENST00000587988 IL16Q14005 1332 aa13.96□□□□□ -0.17
SMARCA4-213ENST00000587988 EIF4A1P60842 406 aaKnown RBP13.96□□□□□ -0.17
SMARCA4-213ENST00000587988 GNAI1P63096 354 aa13.96□□□□□ -0.17
SMARCA4-213ENST00000587988 CDCA7LQ96GN5 454 aa13.96□□□□□ -0.17
SMARCA4-213ENST00000587988 RGPD3A6NKT7 1758 aaPredicted RBP13.96□□□□□ -0.18
SMARCA4-213ENST00000587988 RGPD4Q7Z3J3 1758 aa13.96□□□□□ -0.18
SMARCA4-213ENST00000587988 PRAMEF22A3QJZ6 481 aa13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 SOCS7O14512 581 aa13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 ATP6V1AP38606 617 aa13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 ITPK1Q13572 414 aa13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 KRT24Q2M2I5 525 aa13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 TSR2Q969E8 191 aaKnown RBP13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 CCNL1Q9UK58 526 aaPredicted RBP13.95□□□□□ -0.18
SMARCA4-213ENST00000587988 GOLGA2Q08379 1002 aa13.94□□□□□ -0.18
SMARCA4-213ENST00000587988 FMNL2Q96PY5 1086 aa13.94□□□□□ -0.18
SMARCA4-213ENST00000587988 RREB1Q92766 1687 aa13.94□□□□□ -0.18
SMARCA4-213ENST00000587988 HEG1Q9ULI3 1381 aa13.94□□□□□ -0.18
SMARCA4-213ENST00000587988 TJP1Q07157 1748 aa13.93□□□□□ -0.18
SMARCA4-213ENST00000587988 SLC27A3Q5K4L6 730 aa13.93□□□□□ -0.18
SMARCA4-213ENST00000587988 DNAJC10Q8IXB1 793 aa13.93□□□□□ -0.18
SMARCA4-213ENST00000587988 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
SMARCA4-213ENST00000587988 ZBED9Q6R2W3 1325 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 FANCIQ9NVI1 1328 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 ZNF831Q5JPB2 1677 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 SLFN5Q08AF3 891 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 VSIG10Q8N0Z9 540 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 LINC00116Q8NCU8 138 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 TAF1LQ8IZX4 1826 aa13.92□□□□□ -0.18
SMARCA4-213ENST00000587988 C5P01031 1676 aa13.91□□□□□ -0.18
SMARCA4-213ENST00000587988 NUP188Q5SRE5 1749 aa13.91□□□□□ -0.18
SMARCA4-213ENST00000587988 GIGYF1O75420 1035 aaPredicted RBP13.91□□□□□ -0.18
SMARCA4-213ENST00000587988 C8orf58Q8NAV2 365 aa13.91□□□□□ -0.18
SMARCA4-213ENST00000587988 USP16Q9Y5T5 823 aa13.91□□□□□ -0.18
SMARCA4-213ENST00000587988 E9PSI1 815 aa13.9□□□□□ -0.18
SMARCA4-213ENST00000587988 SNRPA1P09661 255 aaKnown RBP13.9□□□□□ -0.18
SMARCA4-213ENST00000587988 TRMT2AQ8IZ69 625 aaKnown RBP13.9□□□□□ -0.18
SMARCA4-213ENST00000587988 TSPYL6Q8N831 410 aa13.9□□□□□ -0.18
SMARCA4-213ENST00000587988 COL5A3P25940 1745 aaPredicted RBP13.9□□□□□ -0.18
SMARCA4-213ENST00000587988 CICQ96RK0 1608 aaPredicted RBP13.9□□□□□ -0.19
SMARCA4-213ENST00000587988 ELL2O00472 640 aaPredicted RBP13.89□□□□□ -0.19
SMARCA4-213ENST00000587988 CYP19A1P11511 503 aaPredicted RBP13.89□□□□□ -0.19
SMARCA4-213ENST00000587988 EXOSC9Q06265 439 aaKnown RBP13.89□□□□□ -0.19
SMARCA4-213ENST00000587988 DUSP27Q5VZP5 1158 aa13.89□□□□□ -0.19
SMARCA4-213ENST00000587988 MYH16Q9H6N6 1097 aa13.89□□□□□ -0.19
SMARCA4-213ENST00000587988 ZNF827Q17R98 1081 aa13.88□□□□□ -0.19
SMARCA4-213ENST00000587988 ANO8Q9HCE9 1232 aaPredicted RBP13.88□□□□□ -0.19
SMARCA4-213ENST00000587988 MYH14Q7Z406 1995 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms