RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 KAT6BQ8WYB5 2073 aa15.28■□□□□ 0.04
SMARCA4-208ENST00000585799 IFT172Q9UG01 1749 aa15.28■□□□□ 0.04
SMARCA4-208ENST00000585799 IFIT2P09913 472 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-208ENST00000585799 DNAAF4Q8WXU2 420 aa15.28■□□□□ 0.04
SMARCA4-208ENST00000585799 RBM42Q9BTD8 480 aaKnown RBP15.27■□□□□ 0.04
SMARCA4-208ENST00000585799 G3BP1Q13283 466 aaKnown RBP eCLIP15.27■□□□□ 0.042e-9■■■□□ 18.1
SMARCA4-208ENST00000585799 REC8O95072 547 aa15.27■□□□□ 0.03
SMARCA4-208ENST00000585799 IGSF1Q8N6C5 1336 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 NFATC2IPQ8NCF5 419 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 NAP1L2Q9ULW6 460 aaPredicted RBP15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 MAP3K2Q9Y2U5 619 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 PIK3R4Q99570 1358 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 IQSEC2Q5JU85 1478 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 USP19O94966 1318 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 EIF5BO60841 1220 aaKnown RBP15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 PPP1R42Q7Z4L9 355 aa15.26■□□□□ 0.03
SMARCA4-208ENST00000585799 BMP2KLQ5H9B9 411 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 AKAP4Q5JQC9 854 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 DLC1Q96QB1 1528 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 SIRT2Q8IXJ6 389 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 CHMP5Q9NZZ3 219 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 MED14O60244 1454 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 ARHGEF10O15013 1369 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 ST18O60284 1047 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 GSE1Q14687 1217 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 DCTPP1Q9H773 170 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 ABCC4O15439 1325 aa15.25■□□□□ 0.03
SMARCA4-208ENST00000585799 DBF4Q9UBU7 674 aaPredicted RBP15.24■□□□□ 0.03
SMARCA4-208ENST00000585799 CWF19L2Q2TBE0 894 aaKnown RBP15.24■□□□□ 0.03
SMARCA4-208ENST00000585799 CLASRPQ8N2M8 674 aaKnown RBP15.24■□□□□ 0.03
SMARCA4-208ENST00000585799 DIAPH3Q9NSV4 1193 aa15.24■□□□□ 0.03
SMARCA4-208ENST00000585799 GPATCH3Q96I76 525 aa15.24■□□□□ 0.03
SMARCA4-208ENST00000585799 HDAC5Q9UQL6 1122 aa15.24■□□□□ 0.03
SMARCA4-208ENST00000585799 RNMTO43148 476 aaKnown RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 FGD1P98174 961 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 CCDC85AQ96PX6 553 aaPredicted RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 NPHP4O75161 1426 aaPredicted RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 ATP5J2-PTCD1G3V325 749 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 HTATSF1O43719 755 aaKnown RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 SDSP20132 328 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 TAF7LQ5H9L4 462 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 PLEKHM2Q8IWE5 1019 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 NPHP3Q7Z494 1330 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 NUTM2BA6NNL0 878 aaPredicted RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 NUTM2EB1AL46 878 aaPredicted RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 NUTM2AQ8IVF1 878 aaPredicted RBP15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 MYD88Q99836 296 aa15.23■□□□□ 0.03
SMARCA4-208ENST00000585799 NEK4P51957 841 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 TMEM94Q12767 1356 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 PNMA6EA0A0J9YXQ4 647 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 MX1P20591 662 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 AXIN2Q9Y2T1 843 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 PRAMEF22A3QJZ6 481 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 FAM177BA6PVY3 158 aa15.22■□□□□ 0.03
SMARCA4-208ENST00000585799 GORABQ5T7V8 394 aa15.21■□□□□ 0.03
SMARCA4-208ENST00000585799 TTC22Q5TAA0 569 aa15.21■□□□□ 0.03
SMARCA4-208ENST00000585799 GBP4Q96PP9 640 aa15.21■□□□□ 0.03
SMARCA4-208ENST00000585799 NEUROD6Q96NK8 337 aa15.21■□□□□ 0.03
SMARCA4-208ENST00000585799 ARHGEF25Q86VW2 580 aa15.21■□□□□ 0.02
SMARCA4-208ENST00000585799 IFNL2Q8IZJ0 200 aa15.21■□□□□ 0.02
SMARCA4-208ENST00000585799 PA2G4Q9UQ80 394 aaKnown RBP15.21■□□□□ 0.02
SMARCA4-208ENST00000585799 COL3A1P02461 1466 aaPredicted RBP15.2■□□□□ 0.02
SMARCA4-208ENST00000585799 CDC42BPGQ6DT37 1551 aa15.2■□□□□ 0.02
SMARCA4-208ENST00000585799 TECPR2O15040 1411 aa15.2■□□□□ 0.02
SMARCA4-208ENST00000585799 ERC2O15083 957 aa15.2■□□□□ 0.02
SMARCA4-208ENST00000585799 ADAMTS2O95450 1211 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 NBPF7P0C2Y1 421 aaPredicted RBP15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 EIF4A1P60842 406 aaKnown RBP15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 KIF13AQ9H1H9 1805 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 COPS6Q7L5N1 327 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 AACSQ86V21 672 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 XAGE3Q8WTP9 111 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 PDE1AP54750 535 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 HSP90AB4PQ58FF6 505 aa15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 UPF3BQ9BZI7 483 aaKnown RBP15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 CCDC8Q9H0W5 538 aaPredicted RBP15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 MAP2P11137 1827 aaKnown RBP15.19■□□□□ 0.02
SMARCA4-208ENST00000585799 OVOS2A0A0J9YW53 1432 aa15.18■□□□□ 0.02
SMARCA4-208ENST00000585799 OVOS2Q6IE36 1432 aa15.18■□□□□ 0.02
SMARCA4-208ENST00000585799 PIP4K2BP78356 416 aa15.18■□□□□ 0.02
SMARCA4-208ENST00000585799 CWC27Q6UX04 472 aaKnown RBP15.18■□□□□ 0.02
SMARCA4-208ENST00000585799 ATP8B2P98198 1209 aa15.18■□□□□ 0.02
SMARCA4-208ENST00000585799 ZBTB3Q9H5J0 574 aa15.17■□□□□ 0.02
SMARCA4-208ENST00000585799 KIAA0232Q92628 1395 aa15.17■□□□□ 0.02
SMARCA4-208ENST00000585799 PROSER3Q2NL68 480 aa15.17■□□□□ 0.02
SMARCA4-208ENST00000585799 ANP32BQ92688 251 aaKnown RBP15.17■□□□□ 0.02
SMARCA4-208ENST00000585799 RTL1A6NKG5 1358 aa15.16■□□□□ 0.02
SMARCA4-208ENST00000585799 LARP6Q9BRS8 491 aaKnown RBP15.16■□□□□ 0.02
SMARCA4-208ENST00000585799 K7ELQ4 463 aaPredicted RBP15.16■□□□□ 0.02
SMARCA4-208ENST00000585799 NPHP1O15259 732 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 UBE3BQ7Z3V4 1068 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 KIF1BPQ96EK5 621 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 DNAJC2Q99543 621 aaKnown RBP15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 USP44Q9H0E7 712 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 USP31Q70CQ4 1352 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 GSPT1P15170 499 aaKnown RBP15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 CNTROBQ8N137 903 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 RHPN1Q8TCX5 695 aa15.15■□□□□ 0.02
SMARCA4-208ENST00000585799 HYPKQ9NX55 129 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms