RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 IL1RAPL2Q9NP60 686 aa12.93□□□□□ -0.34
TOP3A-209ENST00000580095 LRRFIP2Q9Y608 721 aaKnown RBP12.93□□□□□ -0.34
TOP3A-209ENST00000580095 GNAI2P04899 355 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 PDE1AP54750 535 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 LMOD2Q6P5Q4 547 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 KCNQ3O43525 872 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 CCT4P50991 539 aaKnown RBP12.92□□□□□ -0.34
TOP3A-209ENST00000580095 LRRC59Q96AG4 307 aaKnown RBP12.92□□□□□ -0.34
TOP3A-209ENST00000580095 LGR6Q9HBX8 967 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 KIF24Q5T7B8 1368 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 HMMRO75330 724 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 ZGPATQ8N5A5 531 aaKnown RBP12.92□□□□□ -0.34
TOP3A-209ENST00000580095 RILPL2Q969X0 211 aa12.92□□□□□ -0.34
TOP3A-209ENST00000580095 KDRP35968 1356 aa12.91□□□□□ -0.34
TOP3A-209ENST00000580095 RGPD8O14715 1765 aaPredicted RBP12.91□□□□□ -0.34
TOP3A-209ENST00000580095 DDX11L8A8MPP1 907 aa12.91□□□□□ -0.34
TOP3A-209ENST00000580095 MAP4K4O95819 1239 aaPredicted RBP12.91□□□□□ -0.34
TOP3A-209ENST00000580095 L1TD1Q5T7N2 865 aaKnown RBP12.91□□□□□ -0.34
TOP3A-209ENST00000580095 CCDC30Q5VVM6 783 aa12.91□□□□□ -0.34
TOP3A-209ENST00000580095 ZNF142P52746 1687 aaPredicted RBP12.91□□□□□ -0.34
TOP3A-209ENST00000580095 GAS2L3Q86XJ1 694 aa12.91□□□□□ -0.34
TOP3A-209ENST00000580095 FSD2A1L4K1 749 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 TRIM6-TRIM34B2RNG4 842 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 ESCO1Q5FWF5 840 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 HDGFL1Q5TGJ6 251 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 NBPF6Q5VWK0 638 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 NBPF4Q96M43 638 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 DIP2AQ14689 1571 aa12.9□□□□□ -0.34
TOP3A-209ENST00000580095 RRAGDQ9NQL2 400 aaPredicted RBP12.9□□□□□ -0.34
TOP3A-209ENST00000580095 TAF7Q15545 349 aaPredicted RBP12.89□□□□□ -0.35
TOP3A-209ENST00000580095 UNC5CLQ8IV45 518 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 GBP4Q96PP9 640 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 BCL11BQ9C0K0 894 aaPredicted RBP12.89□□□□□ -0.35
TOP3A-209ENST00000580095 TOPAZ1Q8N9V7 1692 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 RABEP1Q15276 862 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 CASC1Q6TDU7 716 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 NUTM1Q86Y26 1132 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 LRRCC1Q9C099 1032 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 USP44Q9H0E7 712 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
TOP3A-209ENST00000580095 MPRIPQ6WCQ1 1025 aa12.88□□□□□ -0.35
TOP3A-209ENST00000580095 RGPD1P0DJD0 1748 aa12.88□□□□□ -0.35
TOP3A-209ENST00000580095 MAP3K5Q99683 1374 aa12.88□□□□□ -0.35
TOP3A-209ENST00000580095 ERC2O15083 957 aa12.88□□□□□ -0.35
TOP3A-209ENST00000580095 NCLP19338 710 aaKnown RBP12.88□□□□□ -0.35
TOP3A-209ENST00000580095 PSME1Q06323 249 aa12.88□□□□□ -0.35
TOP3A-209ENST00000580095 MCTP1Q6DN14 999 aa12.88□□□□□ -0.35
TOP3A-209ENST00000580095 CIZ1Q9ULV3 898 aaPredicted RBP12.88□□□□□ -0.35
TOP3A-209ENST00000580095 PALD1Q9ULE6 856 aa12.87□□□□□ -0.35
TOP3A-209ENST00000580095 SETD1BQ9UPS6 1966 aaKnown RBP12.87□□□□□ -0.35
TOP3A-209ENST00000580095 UBTFL1P0CB47 393 aaPredicted RBP12.87□□□□□ -0.35
TOP3A-209ENST00000580095 MX1P20591 662 aa12.87□□□□□ -0.35
TOP3A-209ENST00000580095 ANO2Q9NQ90 1003 aa12.87□□□□□ -0.35
TOP3A-209ENST00000580095 CHPF2Q9P2E5 772 aa12.87□□□□□ -0.35
TOP3A-209ENST00000580095 PIK3C2AO00443 1686 aa12.86□□□□□ -0.35
TOP3A-209ENST00000580095 BAG4O95429 457 aaKnown RBP12.86□□□□□ -0.35
TOP3A-209ENST00000580095 NBPF7P0C2Y1 421 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-209ENST00000580095 NEK4P51957 841 aa12.86□□□□□ -0.35
TOP3A-209ENST00000580095 IL25Q9H293 177 aa12.86□□□□□ -0.35
TOP3A-209ENST00000580095 GRPEL1Q9HAV7 217 aa12.86□□□□□ -0.35
TOP3A-209ENST00000580095 GNAI3P08754 354 aa12.86□□□□□ -0.35
TOP3A-209ENST00000580095 FOXD4L6Q3SYB3 417 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-209ENST00000580095 FOXD4L3Q6VB84 417 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-209ENST00000580095 DTNBO60941 627 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 REC8O95072 547 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 ATP8B2P98198 1209 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 ORAI2Q96SN7 254 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 NALCNQ8IZF0 1738 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 AK9Q5TCS8 1911 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 SURF6O75683 361 aaKnown RBP12.85□□□□□ -0.35
TOP3A-209ENST00000580095 UPF3BQ9BZI7 483 aaKnown RBP12.85□□□□□ -0.35
TOP3A-209ENST00000580095 DDX49Q9Y6V7 483 aaKnown RBP12.85□□□□□ -0.35
TOP3A-209ENST00000580095 SLIT1O75093 1534 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 PRAMEF22A3QJZ6 481 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 PI4KAP2A4QPH2 592 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 PPP1R42Q7Z4L9 355 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 PI4KAP1Q8N8J0 262 aa12.85□□□□□ -0.35
TOP3A-209ENST00000580095 ARHGAP23Q9P227 1491 aa12.84□□□□□ -0.35
TOP3A-209ENST00000580095 FAM43AQ8N2R8 423 aa12.84□□□□□ -0.35
TOP3A-209ENST00000580095 ST18O60284 1047 aa12.84□□□□□ -0.35
TOP3A-209ENST00000580095 ZNF530Q6P9A1 599 aaPredicted RBP12.84□□□□□ -0.35
TOP3A-209ENST00000580095 SRGAP3O43295 1099 aa12.83□□□□□ -0.36
TOP3A-209ENST00000580095 LARP6Q9BRS8 491 aaKnown RBP12.83□□□□□ -0.36
TOP3A-209ENST00000580095 ESYT1Q9BSJ8 1104 aa12.83□□□□□ -0.36
TOP3A-209ENST00000580095 HTATSF1O43719 755 aaKnown RBP12.83□□□□□ -0.36
TOP3A-209ENST00000580095 MRE11P49959 708 aa12.83□□□□□ -0.36
TOP3A-209ENST00000580095 CHMLP26374 656 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 TEFQ10587 303 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 TPRNQ4KMQ1 711 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 IP6K1Q92551 441 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 SALL3Q9BXA9 1300 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 IBTKQ9P2D0 1353 aaPredicted RBP12.82□□□□□ -0.36
TOP3A-209ENST00000580095 EIF4A1P60842 406 aaKnown RBP12.82□□□□□ -0.36
TOP3A-209ENST00000580095 NWD1Q149M9 1564 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 PROSER3Q2NL68 480 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 SRCIN1Q9C0H9 1055 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 OSBPL3Q9H4L5 887 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 ZDHHC9Q9Y397 364 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 BTBD11A6QL63 1104 aa12.82□□□□□ -0.36
TOP3A-209ENST00000580095 CAVIN1Q6NZI2 390 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms