RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CCDC30Q5VVM6 783 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 PDLIM2Q96JY6 352 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 AGLP35573 1532 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 ITSN1Q15811 1721 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 ACEP12821 1306 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 PRR36Q9H6K5 1346 aa13.07□□□□□ -0.32
CCDC40-207ENST00000572253 G2E3Q7L622 706 aa13.06□□□□□ -0.32
CCDC40-207ENST00000572253 ARHGEF10O15013 1369 aa13.06□□□□□ -0.32
CCDC40-207ENST00000572253 TECPR2O15040 1411 aa13.06□□□□□ -0.32
CCDC40-207ENST00000572253 CRB1P82279 1406 aa13.06□□□□□ -0.32
CCDC40-207ENST00000572253 FAM69CQ0P6D2 419 aa13.06□□□□□ -0.32
CCDC40-207ENST00000572253 NOL8Q76FK4 1167 aaKnown RBP13.06□□□□□ -0.32
CCDC40-207ENST00000572253 TMEM63CQ9P1W3 806 aa13.06□□□□□ -0.32
CCDC40-207ENST00000572253 BRD1O95696 1058 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 TSPY26PQ9H489 355 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 SETD1AO15047 1707 aaKnown RBP13.05□□□□□ -0.32
CCDC40-207ENST00000572253 C3P01024 1663 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 SSH2Q76I76 1423 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 ZNF500O60304 480 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-207ENST00000572253 ATP8B2P98198 1209 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 CUL4AQ13619 759 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 ZKSCAN5Q9Y2L8 839 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 PDCL3Q9H2J4 239 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 R3HCC1Q9Y3T6 440 aaKnown RBP13.05□□□□□ -0.32
CCDC40-207ENST00000572253 PLEKHG3A1L390 1219 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 CHMLP26374 656 aa13.05□□□□□ -0.32
CCDC40-207ENST00000572253 FLIIQ13045 1269 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 MTHFSDQ2M296 383 aaKnown RBP13.04□□□□□ -0.32
CCDC40-207ENST00000572253 VSIG10Q8N0Z9 540 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 WDR33Q9C0J8 1336 aaKnown RBP13.04□□□□□ -0.32
CCDC40-207ENST00000572253 AMPHP49418 695 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 AKAP12Q02952 1782 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 NUTM2FA1L443 756 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 TSHZ3Q63HK5 1081 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 OVOS2A0A0J9YW53 1432 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 OVOS2Q6IE36 1432 aa13.04□□□□□ -0.32
CCDC40-207ENST00000572253 EPB41L2O43491 1005 aaKnown RBP13.03□□□□□ -0.32
CCDC40-207ENST00000572253 RNF214Q8ND24 703 aa13.03□□□□□ -0.32
CCDC40-207ENST00000572253 MAP7D2Q96T17 732 aa13.03□□□□□ -0.32
CCDC40-207ENST00000572253 AOX1Q06278 1338 aa13.03□□□□□ -0.32
CCDC40-207ENST00000572253 MAP3K19Q56UN5 1328 aa13.03□□□□□ -0.32
CCDC40-207ENST00000572253 HTATSF1O43719 755 aaKnown RBP13.03□□□□□ -0.32
CCDC40-207ENST00000572253 FOXO3O43524 673 aa13.02□□□□□ -0.32
CCDC40-207ENST00000572253 STAP2Q9UGK3 403 aa13.02□□□□□ -0.32
CCDC40-207ENST00000572253 UBTFL1P0CB47 393 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-207ENST00000572253 SOS1Q07889 1333 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-207ENST00000572253 TTC21AQ8NDW8 1320 aa13.02□□□□□ -0.33
CCDC40-207ENST00000572253 FLT4P35916 1363 aa13.02□□□□□ -0.33
CCDC40-207ENST00000572253 USP6P35125 1406 aa13.02□□□□□ -0.33
CCDC40-207ENST00000572253 XPCQ01831 940 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-207ENST00000572253 PALD1Q9ULE6 856 aa13.01□□□□□ -0.33
CCDC40-207ENST00000572253 USP31Q70CQ4 1352 aa13.01□□□□□ -0.33
CCDC40-207ENST00000572253 FAM184AQ8NB25 1140 aa13.01□□□□□ -0.33
CCDC40-207ENST00000572253 SALL3Q9BXA9 1300 aa13.01□□□□□ -0.33
CCDC40-207ENST00000572253 UPF3BQ9BZI7 483 aaKnown RBP13.01□□□□□ -0.33
CCDC40-207ENST00000572253 LRRFIP2Q9Y608 721 aaKnown RBP13.01□□□□□ -0.33
CCDC40-207ENST00000572253 SBNO1A3KN83 1393 aa13.01□□□□□ -0.33
CCDC40-207ENST00000572253 NRXN3Q9Y4C0 1643 aa13.01□□□□□ -0.33
CCDC40-207ENST00000572253 RAB11FIP3O75154 756 aa13□□□□□ -0.33
CCDC40-207ENST00000572253 CHAMP1Q96JM3 812 aa13□□□□□ -0.33
CCDC40-207ENST00000572253 ROBO2Q9HCK4 1378 aa13□□□□□ -0.33
CCDC40-207ENST00000572253 PNMA6EA0A0J9YXQ4 647 aa13□□□□□ -0.33
CCDC40-207ENST00000572253 NSFL1CQ9UNZ2 370 aaKnown RBP13□□□□□ -0.33
CCDC40-207ENST00000572253 NECTIN2Q92692 538 aa13□□□□□ -0.33
CCDC40-207ENST00000572253 GNAT3A8MTJ3 354 aa12.99□□□□□ -0.33
CCDC40-207ENST00000572253 NGDNQ8NEJ9 315 aaKnown RBP12.99□□□□□ -0.33
CCDC40-207ENST00000572253 CYB5RLQ6IPT4 315 aa12.99□□□□□ -0.33
CCDC40-207ENST00000572253 LETM1O95202 739 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-207ENST00000572253 FOXD4L6Q3SYB3 417 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-207ENST00000572253 FOXD4L3Q6VB84 417 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-207ENST00000572253 ATP6V1DQ9Y5K8 247 aa12.99□□□□□ -0.33
CCDC40-207ENST00000572253 TNRQ92752 1358 aa12.99□□□□□ -0.33
CCDC40-207ENST00000572253 UQCRHLA0A096LP55 91 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 UQCRHP07919 91 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 KIAA2012Q0VF49 1180 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 UVSSAQ2YD98 709 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 CHMP4AQ9BY43 222 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 EYA1Q99502 592 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 SURF6O75683 361 aaKnown RBP12.98□□□□□ -0.33
CCDC40-207ENST00000572253 MTERF4Q7Z6M4 381 aaKnown RBP12.98□□□□□ -0.33
CCDC40-207ENST00000572253 IL1RAPL2Q9NP60 686 aa12.98□□□□□ -0.33
CCDC40-207ENST00000572253 CNTROBQ8N137 903 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 IL17RAQ96F46 866 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-207ENST00000572253 TMEM2Q9UHN6 1383 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 IGSF1Q8N6C5 1336 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 HSPA4P34932 840 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 BABAM1Q9NWV8 329 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 FAM13BQ9NYF5 915 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 HSP90AB4PQ58FF6 505 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 DNTTIP2Q5QJE6 756 aaKnown RBP12.97□□□□□ -0.33
CCDC40-207ENST00000572253 CCDC183Q5T5S1 534 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 SASS6Q6UVJ0 657 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 KDRP35968 1356 aa12.97□□□□□ -0.33
CCDC40-207ENST00000572253 USP48Q86UV5 1035 aa12.96□□□□□ -0.33
CCDC40-207ENST00000572253 NUTM1Q86Y26 1132 aa12.96□□□□□ -0.33
CCDC40-207ENST00000572253 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.96□□□□□ -0.33
CCDC40-207ENST00000572253 RBM10P98175 930 aaKnown RBP12.96□□□□□ -0.33
CCDC40-207ENST00000572253 TAF7Q15545 349 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-207ENST00000572253 HDGFL1Q5TGJ6 251 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms