RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CABP4P57796 275 aa16.06■□□□□ 0.16
SF3B3-208ENST00000567250 LMOD3Q0VAK6 560 aa16.06■□□□□ 0.16
SF3B3-208ENST00000567250 PNISRQ8TF01 805 aaKnown RBP16.06■□□□□ 0.16
SF3B3-208ENST00000567250 C5P01031 1676 aa16.05■□□□□ 0.16
SF3B3-208ENST00000567250 CEMIPQ8WUJ3 1361 aa16.05■□□□□ 0.16
SF3B3-208ENST00000567250 TEFQ10587 303 aa16.05■□□□□ 0.16
SF3B3-208ENST00000567250 DEFB132Q7Z7B7 95 aa16.05■□□□□ 0.16
SF3B3-208ENST00000567250 CCDC146Q8IYE0 955 aa16.05■□□□□ 0.16
SF3B3-208ENST00000567250 SMARCC1Q92922 1105 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-208ENST00000567250 CICQ96RK0 1608 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-208ENST00000567250 PALLDQ8WX93 1383 aa16.04■□□□□ 0.16
SF3B3-208ENST00000567250 TAF1LQ8IZX4 1826 aa16.04■□□□□ 0.16
SF3B3-208ENST00000567250 EN1Q05925 392 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-208ENST00000567250 PTF1AQ7RTS3 328 aa16.04■□□□□ 0.16
SF3B3-208ENST00000567250 SLC52A2Q9HAB3 445 aa16.04■□□□□ 0.16
SF3B3-208ENST00000567250 HMGB2P26583 209 aaKnown RBP16.03■□□□□ 0.16
SF3B3-208ENST00000567250 PIGBQ92521 554 aa16.02■□□□□ 0.16
SF3B3-208ENST00000567250 CAMKK2Q96RR4 588 aa16.02■□□□□ 0.16
SF3B3-208ENST00000567250 KDM3BQ7LBC6 1761 aa16.02■□□□□ 0.15
SF3B3-208ENST00000567250 TMPOP42166 694 aaKnown RBP16.01■□□□□ 0.15
SF3B3-208ENST00000567250 RIPK4P57078 832 aa16.01■□□□□ 0.15
SF3B3-208ENST00000567250 EZH2Q15910 746 aaKnown RBP16.01■□□□□ 0.15
SF3B3-208ENST00000567250 SLC27A3Q5K4L6 730 aa16.01■□□□□ 0.15
SF3B3-208ENST00000567250 LGR6Q9HBX8 967 aa16.01■□□□□ 0.15
SF3B3-208ENST00000567250 COL5A3P25940 1745 aaPredicted RBP16■□□□□ 0.15
SF3B3-208ENST00000567250 HOXD11P31277 338 aaPredicted RBP16■□□□□ 0.15
SF3B3-208ENST00000567250 FAM9BQ8IZU0 186 aa16■□□□□ 0.15
SF3B3-208ENST00000567250 NFATC2IPQ8NCF5 419 aa16■□□□□ 0.15
SF3B3-208ENST00000567250 QSER1Q2KHR3 1735 aa15.99■□□□□ 0.15
SF3B3-208ENST00000567250 TXNRD1Q16881 649 aa15.99■□□□□ 0.15
SF3B3-208ENST00000567250 MCM10Q7L590 875 aa15.99■□□□□ 0.15
SF3B3-208ENST00000567250 IL17REQ8NFR9 667 aa15.99■□□□□ 0.15
SF3B3-208ENST00000567250 TJP1Q07157 1748 aa15.99■□□□□ 0.15
SF3B3-208ENST00000567250 NEUROD2Q15784 382 aa15.98■□□□□ 0.15
SF3B3-208ENST00000567250 TTC5Q8N0Z6 440 aa15.98■□□□□ 0.15
SF3B3-208ENST00000567250 MIER1Q8N108 512 aa15.98■□□□□ 0.15
SF3B3-208ENST00000567250 KCPQ6ZWJ8 1503 aa15.98■□□□□ 0.15
SF3B3-208ENST00000567250 LAMB4A4D0S4 1761 aa15.98■□□□□ 0.15
SF3B3-208ENST00000567250 C4BP0C0L5 1744 aa15.97■□□□□ 0.15
SF3B3-208ENST00000567250 APAF1O14727 1248 aa15.97■□□□□ 0.15
SF3B3-208ENST00000567250 ATG3Q9NT62 314 aa15.97■□□□□ 0.15
SF3B3-208ENST00000567250 CCNL1Q9UK58 526 aaPredicted RBP15.97■□□□□ 0.15
SF3B3-208ENST00000567250 RRP7AQ9Y3A4 280 aaKnown RBP15.97■□□□□ 0.15
SF3B3-208ENST00000567250 CALD1Q05682 793 aaKnown RBP15.96■□□□□ 0.15
SF3B3-208ENST00000567250 DCTN1Q14203 1278 aa15.96■□□□□ 0.15
SF3B3-208ENST00000567250 NBPF14Q5TI25 921 aa15.96■□□□□ 0.15
SF3B3-208ENST00000567250 ASAP1Q9ULH1 1129 aa15.96■□□□□ 0.15
SF3B3-208ENST00000567250 LOC102724428A0A0B4J2F2 783 aa15.95■□□□□ 0.14
SF3B3-208ENST00000567250 BTBD11A6QL63 1104 aa15.95■□□□□ 0.14
SF3B3-208ENST00000567250 SIK1P57059 783 aa15.95■□□□□ 0.14
SF3B3-208ENST00000567250 TUBGCP6Q96RT7 1819 aa15.95■□□□□ 0.14
SF3B3-208ENST00000567250 NGEFQ8N5V2 710 aa15.94■□□□□ 0.14
SF3B3-208ENST00000567250 TAF7Q15545 349 aaPredicted RBP15.93■□□□□ 0.14
SF3B3-208ENST00000567250 CCDC27Q2M243 656 aa15.93■□□□□ 0.14
SF3B3-208ENST00000567250 ZNF790Q6PG37 636 aa15.93■□□□□ 0.14
SF3B3-208ENST00000567250 RBM42Q9BTD8 480 aaKnown RBP15.93■□□□□ 0.14
SF3B3-208ENST00000567250 ATP6V1AP38606 617 aa15.92■□□□□ 0.14
SF3B3-208ENST00000567250 PROM2Q8N271 834 aa15.92■□□□□ 0.14
SF3B3-208ENST00000567250 BABAM1Q9NWV8 329 aa15.92■□□□□ 0.14
SF3B3-208ENST00000567250 STK32BQ9NY57 414 aa15.92■□□□□ 0.14
SF3B3-208ENST00000567250 TRIM35Q9UPQ4 493 aa15.92■□□□□ 0.14
SF3B3-208ENST00000567250 UBR3Q6ZT12 1888 aa15.92■□□□□ 0.14
SF3B3-208ENST00000567250 PTCD1O75127 700 aaKnown RBP15.91■□□□□ 0.14
SF3B3-208ENST00000567250 SLC39A6Q13433 755 aa15.91■□□□□ 0.14
SF3B3-208ENST00000567250 FMNL2Q96PY5 1086 aa15.91■□□□□ 0.14
SF3B3-208ENST00000567250 THUMPD2Q9BTF0 503 aaKnown RBP15.91■□□□□ 0.14
SF3B3-208ENST00000567250 HEG1Q9ULI3 1381 aa15.9■□□□□ 0.14
SF3B3-208ENST00000567250 VSIG10Q8N0Z9 540 aa15.9■□□□□ 0.14
SF3B3-208ENST00000567250 LRRC4BQ9NT99 713 aa15.9■□□□□ 0.14
SF3B3-208ENST00000567250 TSPYL4Q9UJ04 414 aa15.89■□□□□ 0.13
SF3B3-208ENST00000567250 CASZ1Q86V15 1759 aa15.89■□□□□ 0.13
SF3B3-208ENST00000567250 AK7Q96M32 723 aa15.88■□□□□ 0.13
SF3B3-208ENST00000567250 ANO8Q9HCE9 1232 aaPredicted RBP15.88■□□□□ 0.13
SF3B3-208ENST00000567250 KCNQ4P56696 695 aa15.87■□□□□ 0.13
SF3B3-208ENST00000567250 GNAI1P63096 354 aa15.87■□□□□ 0.13
SF3B3-208ENST00000567250 SLC15A2Q16348 729 aa15.87■□□□□ 0.13
SF3B3-208ENST00000567250 ZNF496Q96IT1 587 aaPredicted RBP15.87■□□□□ 0.13
SF3B3-208ENST00000567250 TEX13AQ9BXU3 409 aaPredicted RBP15.87■□□□□ 0.13
SF3B3-208ENST00000567250 IFT57Q9NWB7 429 aa15.87■□□□□ 0.13
SF3B3-208ENST00000567250 CNTNAP4Q9C0A0 1308 aa15.87■□□□□ 0.13
SF3B3-208ENST00000567250 C4AP0C0L4 1744 aa15.86■□□□□ 0.13
SF3B3-208ENST00000567250 MYH14Q7Z406 1995 aaKnown RBP15.86■□□□□ 0.13
SF3B3-208ENST00000567250 ITPK1Q13572 414 aa15.86■□□□□ 0.13
SF3B3-208ENST00000567250 WWC1Q8IX03 1113 aa15.86■□□□□ 0.13
SF3B3-208ENST00000567250 CFAP44Q96MT7 982 aa15.86■□□□□ 0.13
SF3B3-208ENST00000567250 SLC4A9Q96Q91 983 aa15.86■□□□□ 0.13
SF3B3-208ENST00000567250 ZNF827Q17R98 1081 aa15.85■□□□□ 0.13
SF3B3-208ENST00000567250 LINC00116Q8NCU8 138 aa15.85■□□□□ 0.13
SF3B3-208ENST00000567250 AKT1S1Q96B36 256 aa15.85■□□□□ 0.13
SF3B3-208ENST00000567250 LAS1LQ9Y4W2 734 aaKnown RBP15.85■□□□□ 0.13
SF3B3-208ENST00000567250 IL16Q14005 1332 aa15.85■□□□□ 0.13
SF3B3-208ENST00000567250 STARD3NLO95772 234 aa15.84■□□□□ 0.13
SF3B3-208ENST00000567250 SNRPA1P09661 255 aaKnown RBP15.84■□□□□ 0.13
SF3B3-208ENST00000567250 R3HDM1Q15032 1099 aaKnown RBP15.84■□□□□ 0.13
SF3B3-208ENST00000567250 RC3H1Q5TC82 1133 aaKnown RBP15.84■□□□□ 0.13
SF3B3-208ENST00000567250 FLAD1Q8NFF5 587 aa15.84■□□□□ 0.13
SF3B3-208ENST00000567250 MIS18AQ9NYP9 233 aa15.84■□□□□ 0.13
SF3B3-208ENST00000567250 TFCP2L1Q9NZI6 479 aa15.84■□□□□ 0.13
SF3B3-208ENST00000567250 CHL1O00533 1208 aa15.83■□□□□ 0.12
SF3B3-208ENST00000567250 KCNQ3O43525 872 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms