RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CASC1Q6TDU7 716 aa16.58■□□□□ 0.25
CLK3-215ENST00000564353 FLT4P35916 1363 aa16.58■□□□□ 0.24
CLK3-215ENST00000564353 HOXC9P31274 260 aa16.58■□□□□ 0.24
CLK3-215ENST00000564353 LMOD2Q6P5Q4 547 aa16.58■□□□□ 0.24
CLK3-215ENST00000564353 NUTM1Q86Y26 1132 aa16.58■□□□□ 0.24
CLK3-215ENST00000564353 UNC5CLQ8IV45 518 aa16.58■□□□□ 0.24
CLK3-215ENST00000564353 AK9Q5TCS8 1911 aa16.58■□□□□ 0.24
CLK3-215ENST00000564353 GNAT3A8MTJ3 354 aa16.57■□□□□ 0.24
CLK3-215ENST00000564353 HMMRO75330 724 aa16.57■□□□□ 0.24
CLK3-215ENST00000564353 BAG4O95429 457 aaKnown RBP16.57■□□□□ 0.24
CLK3-215ENST00000564353 HAP1P54257 671 aaPredicted RBP16.57■□□□□ 0.24
CLK3-215ENST00000564353 RABEP1Q15276 862 aa16.57■□□□□ 0.24
CLK3-215ENST00000564353 THEMISQ8N1K5 641 aaPredicted RBP16.57■□□□□ 0.24
CLK3-215ENST00000564353 KIAA0232Q92628 1395 aa16.57■□□□□ 0.24
CLK3-215ENST00000564353 KCNQ3O43525 872 aa16.56■□□□□ 0.24
CLK3-215ENST00000564353 NEK4P51957 841 aa16.56■□□□□ 0.24
CLK3-215ENST00000564353 ANO2Q9NQ90 1003 aa16.56■□□□□ 0.24
CLK3-215ENST00000564353 PALD1Q9ULE6 856 aa16.56■□□□□ 0.24
CLK3-215ENST00000564353 LARP6Q9BRS8 491 aaKnown RBP16.56■□□□□ 0.24
CLK3-215ENST00000564353 LGR6Q9HBX8 967 aa16.56■□□□□ 0.24
CLK3-215ENST00000564353 MRE11P49959 708 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 CCT4P50991 539 aaKnown RBP16.55■□□□□ 0.24
CLK3-215ENST00000564353 CIZ1Q9ULV3 898 aaPredicted RBP16.55■□□□□ 0.24
CLK3-215ENST00000564353 SBNO1A3KN83 1393 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 USP31Q70CQ4 1352 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 LRRC59Q96AG4 307 aaKnown RBP16.55■□□□□ 0.24
CLK3-215ENST00000564353 UPF3BQ9BZI7 483 aaKnown RBP16.55■□□□□ 0.24
CLK3-215ENST00000564353 AKAP12Q02952 1782 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 IGSF1Q8N6C5 1336 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 ERC2O15083 957 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 HDGFL1Q5TGJ6 251 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 CAVIN1Q6NZI2 390 aaKnown RBP16.55■□□□□ 0.24
CLK3-215ENST00000564353 IL25Q9H293 177 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 TBX22Q9Y458 520 aa16.55■□□□□ 0.24
CLK3-215ENST00000564353 CCDC30Q5VVM6 783 aa16.54■□□□□ 0.24
CLK3-215ENST00000564353 LRRCC1Q9C099 1032 aa16.54■□□□□ 0.24
CLK3-215ENST00000564353 RBM27Q9P2N5 1060 aaKnown RBP16.54■□□□□ 0.24
CLK3-215ENST00000564353 ARHGEF10O15013 1369 aa16.54■□□□□ 0.24
CLK3-215ENST00000564353 PRPF40AO75400 957 aaKnown RBP16.53■□□□□ 0.24
CLK3-215ENST00000564353 MX1P20591 662 aa16.53■□□□□ 0.24
CLK3-215ENST00000564353 ST18O60284 1047 aa16.52■□□□□ 0.24
CLK3-215ENST00000564353 AEBP2Q6ZN18 517 aaPredicted RBP16.52■□□□□ 0.24
CLK3-215ENST00000564353 KIF24Q5T7B8 1368 aa16.52■□□□□ 0.24
CLK3-215ENST00000564353 TTC21AQ8NDW8 1320 aa16.52■□□□□ 0.24
CLK3-215ENST00000564353 REC8O95072 547 aa16.52■□□□□ 0.23
CLK3-215ENST00000564353 USP44Q9H0E7 712 aa16.52■□□□□ 0.23
CLK3-215ENST00000564353 ERBB4Q15303 1308 aa16.52■□□□□ 0.23
CLK3-215ENST00000564353 SSH2Q76I76 1423 aa16.52■□□□□ 0.23
CLK3-215ENST00000564353 GOLGA6L22H0YM25 854 aa16.51■□□□□ 0.23
CLK3-215ENST00000564353 PDE4CQ08493 712 aa16.51■□□□□ 0.23
CLK3-215ENST00000564353 MPRIPQ6WCQ1 1025 aa16.51■□□□□ 0.23
CLK3-215ENST00000564353 SURF6O75683 361 aaKnown RBP16.51■□□□□ 0.23
CLK3-215ENST00000564353 UBTFL1P0CB47 393 aaPredicted RBP16.51■□□□□ 0.23
CLK3-215ENST00000564353 NBPF6Q5VWK0 638 aa16.51■□□□□ 0.23
CLK3-215ENST00000564353 NBPF4Q96M43 638 aa16.51■□□□□ 0.23
CLK3-215ENST00000564353 NBPF7P0C2Y1 421 aaPredicted RBP16.51■□□□□ 0.23
CLK3-215ENST00000564353 TAF7Q15545 349 aaPredicted RBP16.51■□□□□ 0.23
CLK3-215ENST00000564353 NRKQ7Z2Y5 1582 aa16.5■□□□□ 0.23
CLK3-215ENST00000564353 CHPF2Q9P2E5 772 aa16.5■□□□□ 0.23
CLK3-215ENST00000564353 ESCO1Q5FWF5 840 aa16.5■□□□□ 0.23
CLK3-215ENST00000564353 ZDHHC9Q9Y397 364 aa16.5■□□□□ 0.23
CLK3-215ENST00000564353 RGPD8O14715 1765 aaPredicted RBP16.49■□□□□ 0.23
CLK3-215ENST00000564353 NAP1L5Q96NT1 182 aaPredicted RBP16.49■□□□□ 0.23
CLK3-215ENST00000564353 SETD1BQ9UPS6 1966 aaKnown RBP16.49■□□□□ 0.23
CLK3-215ENST00000564353 PRAMEF22A3QJZ6 481 aa16.49■□□□□ 0.23
CLK3-215ENST00000564353 PPP1R42Q7Z4L9 355 aa16.49■□□□□ 0.23
CLK3-215ENST00000564353 NSFL1CQ9UNZ2 370 aaKnown RBP16.49■□□□□ 0.23
CLK3-215ENST00000564353 FER1L4A9Z1Z3 1794 aa16.49■□□□□ 0.23
CLK3-215ENST00000564353 ARHGAP23Q9P227 1491 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 GNAI3P08754 354 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 ATP8B2P98198 1209 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 ESYT1Q9BSJ8 1104 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 KDRP35968 1356 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 SRGAP3O43295 1099 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 TMX3Q96JJ7 454 aa16.48■□□□□ 0.23
CLK3-215ENST00000564353 PI4KAP2A4QPH2 592 aa16.47■□□□□ 0.23
CLK3-215ENST00000564353 RBM10P98175 930 aaKnown RBP16.47■□□□□ 0.23
CLK3-215ENST00000564353 PI4KAP1Q8N8J0 262 aa16.47■□□□□ 0.23
CLK3-215ENST00000564353 DDX54Q8TDD1 881 aaKnown RBP16.47■□□□□ 0.23
CLK3-215ENST00000564353 TRIM44Q96DX7 344 aaPredicted RBP16.47■□□□□ 0.23
CLK3-215ENST00000564353 GDPD2Q9HCC8 539 aa16.47■□□□□ 0.23
CLK3-215ENST00000564353 CHMLP26374 656 aa16.47■□□□□ 0.23
CLK3-215ENST00000564353 MAP3K5Q99683 1374 aa16.47■□□□□ 0.23
CLK3-215ENST00000564353 SLIT1O75093 1534 aa16.47■□□□□ 0.23
CLK3-215ENST00000564353 PSME1Q06323 249 aa16.46■□□□□ 0.23
CLK3-215ENST00000564353 LMBRD1Q9NUN5 540 aa16.46■□□□□ 0.23
CLK3-215ENST00000564353 SKOR2Q2VWA4 1001 aaPredicted RBP16.46■□□□□ 0.22
CLK3-215ENST00000564353 PHF8Q9UPP1 1060 aa16.46■□□□□ 0.22
CLK3-215ENST00000564353 SOS1Q07889 1333 aaPredicted RBP16.45■□□□□ 0.22
CLK3-215ENST00000564353 CPA1P15085 419 aa16.45■□□□□ 0.22
CLK3-215ENST00000564353 NASPP49321 788 aaPredicted RBP16.45■□□□□ 0.22
CLK3-215ENST00000564353 DIP2AQ14689 1571 aa16.45■□□□□ 0.22
CLK3-215ENST00000564353 NUCB2P80303 420 aa16.45■□□□□ 0.22
CLK3-215ENST00000564353 GPT2Q8TD30 523 aa16.45■□□□□ 0.22
CLK3-215ENST00000564353 FGD1P98174 961 aa16.44■□□□□ 0.22
CLK3-215ENST00000564353 OS9Q13438 667 aaPredicted RBP16.44■□□□□ 0.22
CLK3-215ENST00000564353 PROSER3Q2NL68 480 aa16.44■□□□□ 0.22
CLK3-215ENST00000564353 KLHL40Q2TBA0 621 aa16.44■□□□□ 0.22
CLK3-215ENST00000564353 ZSCAN23Q3MJ62 389 aa16.44■□□□□ 0.22
CLK3-215ENST00000564353 SRCIN1Q9C0H9 1055 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms