RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 RRP7AQ9Y3A4 280 aaKnown RBP22.24■■□□□ 1.15
CMTM3-208ENST00000564247 MTHFSDQ2M296 383 aaKnown RBP22.22■■□□□ 1.15
CMTM3-208ENST00000564247 LMOD3Q0VAK6 560 aa22.21■■□□□ 1.15
CMTM3-208ENST00000564247 ZBED9Q6R2W3 1325 aa22.2■■□□□ 1.14
CMTM3-208ENST00000564247 HSP90AB1P08238 724 aaKnown RBP22.19■■□□□ 1.14
CMTM3-208ENST00000564247 ZNF827Q17R98 1081 aa22.19■■□□□ 1.14
CMTM3-208ENST00000564247 CCDC27Q2M243 656 aa22.19■■□□□ 1.14
CMTM3-208ENST00000564247 C1orf141Q5JVX7 400 aa22.19■■□□□ 1.14
CMTM3-208ENST00000564247 PIGBQ92521 554 aa22.19■■□□□ 1.14
CMTM3-208ENST00000564247 CCNL1Q9UK58 526 aaPredicted RBP22.19■■□□□ 1.14
CMTM3-208ENST00000564247 QSER1Q2KHR3 1735 aa22.19■■□□□ 1.14
CMTM3-208ENST00000564247 PALLDQ8WX93 1383 aa22.18■■□□□ 1.14
CMTM3-208ENST00000564247 ZNF530Q6P9A1 599 aaPredicted RBP22.18■■□□□ 1.14
CMTM3-208ENST00000564247 RTF1Q92541 710 aaKnown RBP22.18■■□□□ 1.14
CMTM3-208ENST00000564247 SMARCC1Q92922 1105 aaPredicted RBP22.18■■□□□ 1.14
CMTM3-208ENST00000564247 AKT1S1Q96B36 256 aa22.18■■□□□ 1.14
CMTM3-208ENST00000564247 DCAF5Q96JK2 942 aa22.18■■□□□ 1.14
CMTM3-208ENST00000564247 PDGFDQ9GZP0 370 aaPredicted RBP22.18■■□□□ 1.14
CMTM3-208ENST00000564247 SPON1Q9HCB6 807 aa22.18■■□□□ 1.14
CMTM3-208ENST00000564247 GNAT3A8MTJ3 354 aa22.17■■□□□ 1.14
CMTM3-208ENST00000564247 HTATSF1O43719 755 aaKnown RBP22.17■■□□□ 1.14
CMTM3-208ENST00000564247 KCNQ4P56696 695 aa22.17■■□□□ 1.14
CMTM3-208ENST00000564247 TMOD3Q9NYL9 352 aa22.17■■□□□ 1.14
CMTM3-208ENST00000564247 ERVV-2B6SEH9 535 aa22.16■■□□□ 1.14
CMTM3-208ENST00000564247 AKAP4Q5JQC9 854 aa22.16■■□□□ 1.14
CMTM3-208ENST00000564247 TAF1LQ8IZX4 1826 aa22.15■■□□□ 1.14
CMTM3-208ENST00000564247 C5P01031 1676 aa22.15■■□□□ 1.14
CMTM3-208ENST00000564247 HMGB2P26583 209 aaKnown RBP22.15■■□□□ 1.14
CMTM3-208ENST00000564247 WWC1Q8IX03 1113 aa22.15■■□□□ 1.14
CMTM3-208ENST00000564247 CALD1Q05682 793 aaKnown RBP22.14■■□□□ 1.13
CMTM3-208ENST00000564247 WDR63Q8IWG1 891 aa22.14■■□□□ 1.13
CMTM3-208ENST00000564247 TRIM35Q9UPQ4 493 aa22.14■■□□□ 1.13
CMTM3-208ENST00000564247 TUBGCP6Q96RT7 1819 aa22.14■■□□□ 1.13
CMTM3-208ENST00000564247 KDM6AO15550 1401 aaPredicted RBP22.14■■□□□ 1.13
CMTM3-208ENST00000564247 DLG5Q8TDM6 1919 aa22.12■■□□□ 1.13
CMTM3-208ENST00000564247 ZBTB7AO95365 584 aa22.12■■□□□ 1.13
CMTM3-208ENST00000564247 MAP3K5Q99683 1374 aa22.12■■□□□ 1.13
CMTM3-208ENST00000564247 GOLGA2Q08379 1002 aa22.11■■□□□ 1.13
CMTM3-208ENST00000564247 TFCP2L1Q9NZI6 479 aa22.11■■□□□ 1.13
CMTM3-208ENST00000564247 SCN11AQ9UI33 1791 aa22.11■■□□□ 1.13
CMTM3-208ENST00000564247 MTFR1LQ9H019 292 aa22.1■■□□□ 1.13
CMTM3-208ENST00000564247 ASAP1Q9ULH1 1129 aa22.1■■□□□ 1.13
CMTM3-208ENST00000564247 PNPLA7Q6ZV29 1317 aa22.09■■□□□ 1.13
CMTM3-208ENST00000564247 ATG3Q9NT62 314 aa22.09■■□□□ 1.13
CMTM3-208ENST00000564247 ZNF521Q96K83 1311 aa22.08■■□□□ 1.13
CMTM3-208ENST00000564247 VIRMAQ69YN4 1812 aaKnown RBP22.08■■□□□ 1.13
CMTM3-208ENST00000564247 LOC102724428A0A0B4J2F2 783 aa22.08■■□□□ 1.13
CMTM3-208ENST00000564247 PTGER2P43116 358 aa22.08■■□□□ 1.13
CMTM3-208ENST00000564247 SIK1P57059 783 aa22.08■■□□□ 1.13
CMTM3-208ENST00000564247 CABP4P57796 275 aa22.08■■□□□ 1.13
CMTM3-208ENST00000564247 MCM10Q7L590 875 aa22.08■■□□□ 1.13
CMTM3-208ENST00000564247 PPP1R1BQ9UD71 204 aaPredicted RBP22.08■■□□□ 1.13
CMTM3-208ENST00000564247 ATF5Q9Y2D1 282 aaPredicted RBP22.08■■□□□ 1.13
CMTM3-208ENST00000564247 C4BP0C0L5 1744 aa22.08■■□□□ 1.12
CMTM3-208ENST00000564247 DCTN1Q14203 1278 aa22.07■■□□□ 1.12
CMTM3-208ENST00000564247 SLC16A10Q8TF71 515 aa22.07■■□□□ 1.12
CMTM3-208ENST00000564247 IL16Q14005 1332 aa22.06■■□□□ 1.12
CMTM3-208ENST00000564247 IL17REQ8NFR9 667 aa22.06■■□□□ 1.12
CMTM3-208ENST00000564247 ZNF831Q5JPB2 1677 aa22.06■■□□□ 1.12
CMTM3-208ENST00000564247 E9PSI1 815 aa22.05■■□□□ 1.12
CMTM3-208ENST00000564247 CENPBP07199 599 aaPredicted RBP22.05■■□□□ 1.12
CMTM3-208ENST00000564247 COL24A1Q17RW2 1714 aa22.04■■□□□ 1.12
CMTM3-208ENST00000564247 RNMTO43148 476 aaKnown RBP22.04■■□□□ 1.12
CMTM3-208ENST00000564247 TEFQ10587 303 aa22.04■■□□□ 1.12
CMTM3-208ENST00000564247 NFATC2IPQ8NCF5 419 aa22.04■■□□□ 1.12
CMTM3-208ENST00000564247 SGIP1Q9BQI5 828 aa22.04■■□□□ 1.12
CMTM3-208ENST00000564247 THUMPD2Q9BTF0 503 aaKnown RBP22.04■■□□□ 1.12
CMTM3-208ENST00000564247 ADAMTS7Q9UKP4 1686 aa22.04■■□□□ 1.12
CMTM3-208ENST00000564247 GNAI1P63096 354 aa22.03■■□□□ 1.12
CMTM3-208ENST00000564247 MYH16Q9H6N6 1097 aa22.03■■□□□ 1.12
CMTM3-208ENST00000564247 LGR6Q9HBX8 967 aa22.03■■□□□ 1.12
CMTM3-208ENST00000564247 LAS1LQ9Y4W2 734 aaKnown RBP22.03■■□□□ 1.12
CMTM3-208ENST00000564247 UBR3Q6ZT12 1888 aa22.03■■□□□ 1.12
CMTM3-208ENST00000564247 ATP6V1AP38606 617 aa22.02■■□□□ 1.12
CMTM3-208ENST00000564247 SLFN5Q08AF3 891 aa22.02■■□□□ 1.12
CMTM3-208ENST00000564247 FLAD1Q8NFF5 587 aa22.02■■□□□ 1.12
CMTM3-208ENST00000564247 CDCA7LQ96GN5 454 aa22.02■■□□□ 1.12
CMTM3-208ENST00000564247 MRC1P22897 1456 aa22.02■■□□□ 1.12
CMTM3-208ENST00000564247 ITPK1Q13572 414 aa22.01■■□□□ 1.11
CMTM3-208ENST00000564247 TAF7Q15545 349 aaPredicted RBP22.01■■□□□ 1.11
CMTM3-208ENST00000564247 COL23A1Q86Y22 540 aaPredicted RBP22.01■■□□□ 1.11
CMTM3-208ENST00000564247 LINC00116Q8NCU8 138 aa22.01■■□□□ 1.11
CMTM3-208ENST00000564247 AK7Q96M32 723 aa22.01■■□□□ 1.11
CMTM3-208ENST00000564247 IFT57Q9NWB7 429 aa22.01■■□□□ 1.11
CMTM3-208ENST00000564247 CFAP44Q96MT7 982 aa22■■□□□ 1.11
CMTM3-208ENST00000564247 SLC52A2Q9HAB3 445 aa22■■□□□ 1.11
CMTM3-208ENST00000564247 SLC4A9Q96Q91 983 aa21.99■■□□□ 1.11
CMTM3-208ENST00000564247 CEMIPQ8WUJ3 1361 aa21.99■■□□□ 1.11
CMTM3-208ENST00000564247 COL5A3P25940 1745 aaPredicted RBP21.98■■□□□ 1.11
CMTM3-208ENST00000564247 RBM42Q9BTD8 480 aaKnown RBP21.98■■□□□ 1.11
CMTM3-208ENST00000564247 BABAM1Q9NWV8 329 aa21.98■■□□□ 1.11
CMTM3-208ENST00000564247 SPINK5Q9NQ38 1064 aaPredicted RBP21.97■■□□□ 1.11
CMTM3-208ENST00000564247 MSH5O43196 834 aa21.96■■□□□ 1.11
CMTM3-208ENST00000564247 ZNF853P0CG23 659 aa21.96■■□□□ 1.11
CMTM3-208ENST00000564247 TRMT2AQ8IZ69 625 aaKnown RBP21.96■■□□□ 1.11
CMTM3-208ENST00000564247 ARXQ96QS3 562 aa21.96■■□□□ 1.11
CMTM3-208ENST00000564247 CICQ96RK0 1608 aaPredicted RBP21.95■■□□□ 1.1
CMTM3-208ENST00000564247 CHL1O00533 1208 aa21.95■■□□□ 1.1
CMTM3-208ENST00000564247 SSFA2P28290 1259 aa21.95■■□□□ 1.1
CMTM3-208ENST00000564247 POLD1P28340 1107 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms