RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 ANKRD24Q8TF21 1146 aa13.81□□□□□ -0.2
SPG11-217ENST00000559511 N4BP2Q86UW6 1770 aaPredicted RBP13.8□□□□□ -0.2
SPG11-217ENST00000559511 TNS3Q68CZ2 1445 aa13.8□□□□□ -0.2
SPG11-217ENST00000559511 ZC3H6P61129 1189 aaKnown RBP13.8□□□□□ -0.2
SPG11-217ENST00000559511 RPAP2Q8IXW5 612 aaPredicted RBP13.8□□□□□ -0.2
SPG11-217ENST00000559511 SLKQ9H2G2 1235 aaPredicted RBP13.8□□□□□ -0.2
SPG11-217ENST00000559511 FRAT2O75474 233 aaPredicted RBP13.79□□□□□ -0.2
SPG11-217ENST00000559511 SLC4A10Q6U841 1118 aa13.79□□□□□ -0.2
SPG11-217ENST00000559511 ANTXR1Q9H6X2 564 aa13.79□□□□□ -0.2
SPG11-217ENST00000559511 ZNF335Q9H4Z2 1342 aaPredicted RBP13.79□□□□□ -0.2
SPG11-217ENST00000559511 CEMIPQ8WUJ3 1361 aa13.79□□□□□ -0.2
SPG11-217ENST00000559511 TAF7Q15545 349 aaPredicted RBP13.79□□□□□ -0.2
SPG11-217ENST00000559511 NECTIN2Q92692 538 aa13.79□□□□□ -0.2
SPG11-217ENST00000559511 STK31Q9BXU1 1019 aa13.79□□□□□ -0.2
SPG11-217ENST00000559511 PLEKHM2Q8IWE5 1019 aa13.78□□□□□ -0.2
SPG11-217ENST00000559511 SIPA1L3O60292 1781 aaPredicted RBP13.78□□□□□ -0.2
SPG11-217ENST00000559511 GSPT1P15170 499 aaKnown RBP13.78□□□□□ -0.2
SPG11-217ENST00000559511 RBM25P49756 843 aaKnown RBP13.78□□□□□ -0.2
SPG11-217ENST00000559511 CCT4P50991 539 aaKnown RBP13.78□□□□□ -0.2
SPG11-217ENST00000559511 CCDC30Q5VVM6 783 aa13.78□□□□□ -0.2
SPG11-217ENST00000559511 TBC1D9Q6ZT07 1266 aa13.78□□□□□ -0.2
SPG11-217ENST00000559511 SPATA31A3Q5VYP0 1347 aa13.78□□□□□ -0.2
SPG11-217ENST00000559511 ERBB3P21860 1342 aa13.77□□□□□ -0.21
SPG11-217ENST00000559511 FLIIQ13045 1269 aa13.77□□□□□ -0.21
SPG11-217ENST00000559511 BRINP3Q76B58 766 aa13.77□□□□□ -0.21
SPG11-217ENST00000559511 C16orf71Q8IYS4 520 aaPredicted RBP13.77□□□□□ -0.21
SPG11-217ENST00000559511 CABLES1Q8TDN4 633 aa13.77□□□□□ -0.21
SPG11-217ENST00000559511 BABAM1Q9NWV8 329 aa13.77□□□□□ -0.21
SPG11-217ENST00000559511 PLEKHO1Q53GL0 409 aaPredicted RBP13.76□□□□□ -0.21
SPG11-217ENST00000559511 BCL11AQ9H165 835 aa13.76□□□□□ -0.21
SPG11-217ENST00000559511 LGR6Q9HBX8 967 aa13.76□□□□□ -0.21
SPG11-217ENST00000559511 ZNF530Q6P9A1 599 aaPredicted RBP13.76□□□□□ -0.21
SPG11-217ENST00000559511 OTUD7AQ8TE49 926 aaPredicted RBP13.76□□□□□ -0.21
SPG11-217ENST00000559511 ADAMTS7Q9UKP4 1686 aa13.76□□□□□ -0.21
SPG11-217ENST00000559511 SMARCA5O60264 1052 aaPredicted RBP13.75□□□□□ -0.21
SPG11-217ENST00000559511 FKBP5Q13451 457 aaPredicted RBP13.75□□□□□ -0.21
SPG11-217ENST00000559511 AMOTQ4VCS5 1084 aa13.75□□□□□ -0.21
SPG11-217ENST00000559511 AKAP4Q5JQC9 854 aa13.75□□□□□ -0.21
SPG11-217ENST00000559511 ABCC6O95255 1503 aa13.75□□□□□ -0.21
SPG11-217ENST00000559511 SCN11AQ9UI33 1791 aa13.75□□□□□ -0.21
SPG11-217ENST00000559511 SOS1Q07889 1333 aaPredicted RBP13.75□□□□□ -0.21
SPG11-217ENST00000559511 APBB1O00213 710 aa13.75□□□□□ -0.21
SPG11-217ENST00000559511 TTC22Q5TAA0 569 aa13.75□□□□□ -0.21
SPG11-217ENST00000559511 ABCA3Q99758 1704 aa13.74□□□□□ -0.21
SPG11-217ENST00000559511 SPRYD3Q8NCJ5 442 aa13.74□□□□□ -0.21
SPG11-217ENST00000559511 CDC45O75419 566 aa13.73□□□□□ -0.21
SPG11-217ENST00000559511 KIF2CQ99661 725 aa13.73□□□□□ -0.21
SPG11-217ENST00000559511 SLAIN2Q9P270 581 aa13.73□□□□□ -0.21
SPG11-217ENST00000559511 MPRIPQ6WCQ1 1025 aa13.73□□□□□ -0.21
SPG11-217ENST00000559511 PXDNLA1KZ92 1463 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 NHSL1Q5SYE7 1610 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 GNAI2P04899 355 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 HDGFL1Q5TGJ6 251 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 OVOS2A0A0G2JMS6 1433 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 HMMRO75330 724 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 CHRNA2Q15822 529 aa13.72□□□□□ -0.21
SPG11-217ENST00000559511 CPDO75976 1380 aa13.71□□□□□ -0.21
SPG11-217ENST00000559511 SOS2Q07890 1332 aaPredicted RBP13.71□□□□□ -0.21
SPG11-217ENST00000559511 TUBGCP6Q96RT7 1819 aa13.71□□□□□ -0.21
SPG11-217ENST00000559511 RNMTO43148 476 aaKnown RBP13.71□□□□□ -0.21
SPG11-217ENST00000559511 KCNQ3O43525 872 aa13.71□□□□□ -0.21
SPG11-217ENST00000559511 EIF4A1P60842 406 aaKnown RBP13.71□□□□□ -0.21
SPG11-217ENST00000559511 C1orf141Q5JVX7 400 aa13.71□□□□□ -0.21
SPG11-217ENST00000559511 PHAXQ9H814 394 aaKnown RBP13.71□□□□□ -0.21
SPG11-217ENST00000559511 NLRP2Q9NX02 1062 aa13.71□□□□□ -0.21
SPG11-217ENST00000559511 PKD1L3Q7Z443 1732 aa13.71□□□□□ -0.22
SPG11-217ENST00000559511 TEFQ10587 303 aa13.7□□□□□ -0.22
SPG11-217ENST00000559511 HSCBQ8IWL3 235 aa13.7□□□□□ -0.22
SPG11-217ENST00000559511 GSE1Q14687 1217 aa13.7□□□□□ -0.22
SPG11-217ENST00000559511 MEGF6O75095 1541 aa13.69□□□□□ -0.22
SPG11-217ENST00000559511 GNAI3P08754 354 aa13.69□□□□□ -0.22
SPG11-217ENST00000559511 SNX21Q969T3 373 aa13.69□□□□□ -0.22
SPG11-217ENST00000559511 PNMA6EA0A0J9YXQ4 647 aa13.69□□□□□ -0.22
SPG11-217ENST00000559511 EIF2S2P20042 333 aaKnown RBP13.69□□□□□ -0.22
SPG11-217ENST00000559511 SDSP20132 328 aa13.69□□□□□ -0.22
SPG11-217ENST00000559511 EXOC6BQ9Y2D4 811 aa13.69□□□□□ -0.22
SPG11-217ENST00000559511 BTBD11A6QL63 1104 aa13.68□□□□□ -0.22
SPG11-217ENST00000559511 RAPGEF4Q8WZA2 1011 aa13.68□□□□□ -0.22
SPG11-217ENST00000559511 USP44Q9H0E7 712 aa13.68□□□□□ -0.22
SPG11-217ENST00000559511 LRRFIP2Q9Y608 721 aaKnown RBP13.68□□□□□ -0.22
SPG11-217ENST00000559511 CD2BP2O95400 341 aaKnown RBP13.67□□□□□ -0.22
SPG11-217ENST00000559511 CHPF2Q9P2E5 772 aa13.67□□□□□ -0.22
SPG11-217ENST00000559511 HOXB7P09629 217 aa13.67□□□□□ -0.22
SPG11-217ENST00000559511 CSB-PGBD3P0DP91 1061 aa13.67□□□□□ -0.22
SPG11-217ENST00000559511 ATP8B2P98198 1209 aa13.67□□□□□ -0.22
SPG11-217ENST00000559511 PARP4Q9UKK3 1724 aaKnown RBP13.66□□□□□ -0.22
SPG11-217ENST00000559511 TATP17735 454 aaPredicted RBP13.66□□□□□ -0.22
SPG11-217ENST00000559511 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
SPG11-217ENST00000559511 PDE1AP54750 535 aa13.66□□□□□ -0.22
SPG11-217ENST00000559511 OSBPL3Q9H4L5 887 aa13.66□□□□□ -0.22
SPG11-217ENST00000559511 SALL3Q9BXA9 1300 aa13.65□□□□□ -0.22
SPG11-217ENST00000559511 IBTKQ9P2D0 1353 aaPredicted RBP13.65□□□□□ -0.22
SPG11-217ENST00000559511 KDM6AO15550 1401 aaPredicted RBP13.65□□□□□ -0.22
SPG11-217ENST00000559511 ANXA1P04083 346 aa13.65□□□□□ -0.22
SPG11-217ENST00000559511 DDIT3P35638 169 aa13.65□□□□□ -0.22
SPG11-217ENST00000559511 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.65□□□□□ -0.226e-6■□□□□ 8.9
SPG11-217ENST00000559511 CHMP5Q9NZZ3 219 aa13.65□□□□□ -0.22
SPG11-217ENST00000559511 C5P01031 1676 aa13.65□□□□□ -0.22
SPG11-217ENST00000559511 UBTFL1P0CB47 393 aaPredicted RBP13.64□□□□□ -0.23
SPG11-217ENST00000559511 TSHZ3Q63HK5 1081 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms