RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	LRP2BP	Q9P2M1	347 aa		13.52	□□□□□ -0.24
SYNE2-208	ENST00000553289	IL16	Q14005	1332 aa		13.52	□□□□□ -0.24
SYNE2-208	ENST00000553289	CCDC183	Q5T5S1	534 aa		13.52	□□□□□ -0.24
SYNE2-208	ENST00000553289	TTC21B	Q7Z4L5	1316 aa		13.52	□□□□□ -0.25
SYNE2-208	ENST00000553289	ATP2B2	Q01814	1243 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	PHAX	Q9H814	394 aa	Known RBP	13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	ADGRL1	O94910	1474 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	CTAGE5	O15320	804 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	ANO10	Q9NW15	660 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	MCM10	Q7L590	875 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	PDCL3	Q9H2J4	239 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	ZNF652	Q9Y2D9	606 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	CD109	Q6YHK3	1445 aa		13.51	□□□□□ -0.25
SYNE2-208	ENST00000553289	UQCRHL	A0A096LP55	91 aa		13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	IDH1	O75874	414 aa	Known RBP	13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	UQCRH	P07919	91 aa		13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	METTL24	Q5JXM2	366 aa		13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	HYPK	Q9NX55	129 aa		13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	HSP90AB3P	Q58FF7	597 aa		13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	EPB41L2	O43491	1005 aa	Known RBP	13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	PRPF40B	Q6NWY9	871 aa	Known RBP	13.5	□□□□□ -0.25
SYNE2-208	ENST00000553289	IFIT1	P09914	478 aa	Known RBP	13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	ANKRD18A	Q8IVF6	992 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	DNAAF4	Q8WXU2	420 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	SYCE3	A1L190	88 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	CCDC83	Q8IWF9	413 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	TSPYL1	Q9H0U9	437 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	ZHX3	Q9H4I2	956 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	ZRSR2	Q15696	482 aa	Known RBP	13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	BMP2KL	Q5H9B9	411 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	GBP3	Q9H0R5	595 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	DBF4	Q9UBU7	674 aa	Predicted RBP	13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	LIMCH1	Q9UPQ0	1083 aa		13.49	□□□□□ -0.25
SYNE2-208	ENST00000553289	WASL	O00401	505 aa	Predicted RBP	13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	FILIP1	Q7Z7B0	1213 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	KLHL34	Q8N239	644 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	ZSCAN12	O43309	604 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	ZNF397	Q8NF99	534 aa	Predicted RBP	13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	THUMPD2	Q9BTF0	503 aa	Known RBP	13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	ANKRD36B	Q8N2N9	1353 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	GRIN2A	Q12879	1464 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	C11orf95	C9JLR9	678 aa	Predicted RBP	13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	ARHGAP29	Q52LW3	1261 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	KIAA0754	O94854	1291 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	SFPQ	P23246	707 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	CFAP100	Q494V2	611 aa		13.48	□□□□□ -0.25
SYNE2-208	ENST00000553289	EIF5	P55010	431 aa	Known RBP	13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	DDX11	Q96FC9	970 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	PLB1	Q6P1J6	1458 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	RBM10	P98175	930 aa	Known RBP	13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	GOLGA6L7	A0A1B0GV03	622 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	CAVIN4	Q5BKX8	364 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	CCDC148	Q8NFR7	591 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	EVI5L	Q96CN4	794 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	TRIM27	P14373	513 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	WAPL	Q7Z5K2	1190 aa		13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	RNF41	Q9H4P4	317 aa	Predicted RBP	13.47	□□□□□ -0.25
SYNE2-208	ENST00000553289	RALGAPB	Q86X10	1494 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	RRP9	O43818	475 aa	Known RBP	13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	MAP3K12	Q12852	859 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	C20orf194	Q5TEA3	1177 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	NME9	Q86XW9	330 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	STK11IP	Q8N1F8	1099 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	UBXN4	Q92575	508 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	DDX19A	Q9NUU7	478 aa	Known RBP	13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	TMOD3	Q9NYL9	352 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	NEMF	O60524	1076 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	C8orf76	Q96K31	380 aa		13.46	□□□□□ -0.25
SYNE2-208	ENST00000553289	SMARCA5	O60264	1052 aa	Predicted RBP	13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	TAF4B	Q92750	862 aa		13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	MYD88	Q99836	296 aa		13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	MIS18A	Q9NYP9	233 aa		13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	PPP1R12B	O60237	982 aa	Predicted RBP	13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	ZC3H6	P61129	1189 aa	Known RBP	13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	NAPB	Q9H115	298 aa		13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	BOLA2	Q9H3K6	86 aa		13.46	□□□□□ -0.26
SYNE2-208	ENST00000553289	KIAA1328	Q86T90	577 aa		13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	ARHGAP45	Q92619	1136 aa		13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	ADGRF5	Q8IZF2	1346 aa		13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	C14orf93	Q9H972	538 aa	Known RBP	13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	SSB	P05455	408 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	IFIT5	Q13325	482 aa	Known RBP	13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	SEC63	Q9UGP8	760 aa	Known RBP	13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	JAKMIP3	Q5VZ66	844 aa		13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	TBC1D2	Q9BYX2	928 aa		13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	PHF8	Q9UPP1	1060 aa		13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	LRRFIP2	Q9Y608	721 aa	Known RBP	13.45	□□□□□ -0.26
SYNE2-208	ENST00000553289	NEFH	P12036	1026 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	DES	P17661	470 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	FLII	Q13045	1269 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	SEPT7	Q16181	437 aa	Known RBP	13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	ECHDC1	Q9NTX5	307 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	ZNF76	P36508	570 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	PTPN14	Q15678	1187 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	FAM177A1	Q8N128	213 aa	Predicted RBP	13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	EMILIN1	Q9Y6C2	1016 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	FGFR1OP	O95684	399 aa	Known RBP	13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	CAVIN2	O95810	425 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	RBM5	P52756	815 aa	Known RBP eCLIP	13.44	□□□□□ -0.26

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