RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 THUMPD2Q9BTF0 503 aaKnown RBP19■□□□□ 0.63
TNFRSF1A-216ENST00000543995 TRIM35Q9UPQ4 493 aa19■□□□□ 0.63
TNFRSF1A-216ENST00000543995 MRC1P22897 1456 aa18.99■□□□□ 0.63
TNFRSF1A-216ENST00000543995 SIPA1L3O60292 1781 aaPredicted RBP18.98■□□□□ 0.63
TNFRSF1A-216ENST00000543995 BAG6P46379 1132 aa18.97■□□□□ 0.63
TNFRSF1A-216ENST00000543995 TAF7Q15545 349 aaPredicted RBP18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 ASAP1Q9ULH1 1129 aa18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 BTBD11A6QL63 1104 aa18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 EN1Q05925 392 aaPredicted RBP18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 CCDC27Q2M243 656 aa18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 NGEFQ8N5V2 710 aa18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 SMARCC1Q92922 1105 aaPredicted RBP18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 ATG3Q9NT62 314 aa18.95■□□□□ 0.62
TNFRSF1A-216ENST00000543995 SLC39A6Q13433 755 aa18.94■□□□□ 0.62
TNFRSF1A-216ENST00000543995 NCBP3Q53F19 620 aaKnown RBP18.94■□□□□ 0.62
TNFRSF1A-216ENST00000543995 DEFB132Q7Z7B7 95 aa18.94■□□□□ 0.62
TNFRSF1A-216ENST00000543995 WWC1Q8IX03 1113 aa18.94■□□□□ 0.62
TNFRSF1A-216ENST00000543995 PALLDQ8WX93 1383 aa18.93■□□□□ 0.62
TNFRSF1A-216ENST00000543995 PLSCR1O15162 318 aa18.93■□□□□ 0.62
TNFRSF1A-216ENST00000543995 CALD1Q05682 793 aaKnown RBP18.93■□□□□ 0.62
TNFRSF1A-216ENST00000543995 TTC5Q8N0Z6 440 aa18.93■□□□□ 0.62
TNFRSF1A-216ENST00000543995 LAS1LQ9Y4W2 734 aaKnown RBP18.93■□□□□ 0.62
TNFRSF1A-216ENST00000543995 PAPPAQ13219 1627 aa18.92■□□□□ 0.62
TNFRSF1A-216ENST00000543995 RGPD3A6NKT7 1758 aaPredicted RBP18.92■□□□□ 0.62
TNFRSF1A-216ENST00000543995 RGPD4Q7Z3J3 1758 aa18.92■□□□□ 0.62
TNFRSF1A-216ENST00000543995 LY75O60449 1722 aa18.92■□□□□ 0.62
TNFRSF1A-216ENST00000543995 SOCS7O14512 581 aa18.91■□□□□ 0.62
TNFRSF1A-216ENST00000543995 HNRNPUQ00839 825 aaKnown RBP eCLIP18.91■□□□□ 0.62
TNFRSF1A-216ENST00000543995 MIS18AQ9NYP9 233 aa18.91■□□□□ 0.62
TNFRSF1A-216ENST00000543995 EZH2Q15910 746 aaKnown RBP18.9■□□□□ 0.62
TNFRSF1A-216ENST00000543995 ZNF790Q6PG37 636 aa18.9■□□□□ 0.62
TNFRSF1A-216ENST00000543995 RBM42Q9BTD8 480 aaKnown RBP18.9■□□□□ 0.62
TNFRSF1A-216ENST00000543995 PTCD1O75127 700 aaKnown RBP18.9■□□□□ 0.62
TNFRSF1A-216ENST00000543995 TSPYL4Q9UJ04 414 aa18.9■□□□□ 0.62
TNFRSF1A-216ENST00000543995 CAMKK2Q96RR4 588 aa18.89■□□□□ 0.61
TNFRSF1A-216ENST00000543995 KDM3BQ7LBC6 1761 aa18.88■□□□□ 0.61
TNFRSF1A-216ENST00000543995 KCNQ3O43525 872 aa18.88■□□□□ 0.61
TNFRSF1A-216ENST00000543995 TXNRD1Q16881 649 aa18.88■□□□□ 0.61
TNFRSF1A-216ENST00000543995 CFAP44Q96MT7 982 aa18.88■□□□□ 0.61
TNFRSF1A-216ENST00000543995 CCNL1Q9UK58 526 aaPredicted RBP18.88■□□□□ 0.61
TNFRSF1A-216ENST00000543995 UBR2Q8IWV8 1755 aa18.88■□□□□ 0.61
TNFRSF1A-216ENST00000543995 LOC102724428A0A0B4J2F2 783 aa18.87■□□□□ 0.61
TNFRSF1A-216ENST00000543995 SIK1P57059 783 aa18.87■□□□□ 0.61
TNFRSF1A-216ENST00000543995 GNAI1P63096 354 aa18.87■□□□□ 0.61
TNFRSF1A-216ENST00000543995 WDR63Q8IWG1 891 aa18.87■□□□□ 0.61
TNFRSF1A-216ENST00000543995 IFT57Q9NWB7 429 aa18.87■□□□□ 0.61
TNFRSF1A-216ENST00000543995 BABAM1Q9NWV8 329 aa18.87■□□□□ 0.61
TNFRSF1A-216ENST00000543995 ATP6V1AP38606 617 aa18.86■□□□□ 0.61
TNFRSF1A-216ENST00000543995 KCNQ4P56696 695 aa18.86■□□□□ 0.61
TNFRSF1A-216ENST00000543995 SLC27A3Q5K4L6 730 aa18.86■□□□□ 0.61
TNFRSF1A-216ENST00000543995 CHL1O00533 1208 aa18.85■□□□□ 0.61
TNFRSF1A-216ENST00000543995 PROM2Q8N271 834 aa18.85■□□□□ 0.61
TNFRSF1A-216ENST00000543995 KCPQ6ZWJ8 1503 aa18.85■□□□□ 0.61
TNFRSF1A-216ENST00000543995 ZNF496Q96IT1 587 aaPredicted RBP18.84■□□□□ 0.61
TNFRSF1A-216ENST00000543995 FMNL2Q96PY5 1086 aa18.84■□□□□ 0.61
TNFRSF1A-216ENST00000543995 RREB1Q92766 1687 aa18.84■□□□□ 0.61
TNFRSF1A-216ENST00000543995 IL16Q14005 1332 aa18.84■□□□□ 0.61
TNFRSF1A-216ENST00000543995 MBIPQ9NS73 344 aa18.84■□□□□ 0.61
TNFRSF1A-216ENST00000543995 ZNF521Q96K83 1311 aa18.83■□□□□ 0.61
TNFRSF1A-216ENST00000543995 ZNF853P0CG23 659 aa18.83■□□□□ 0.6
TNFRSF1A-216ENST00000543995 LRRC4BQ9NT99 713 aa18.83■□□□□ 0.6
TNFRSF1A-216ENST00000543995 HEG1Q9ULI3 1381 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 GOLGA2Q08379 1002 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 SLC4A9Q96Q91 983 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 TAF1LQ8IZX4 1826 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 C5P01031 1676 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 ZNF831Q5JPB2 1677 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 NUP188Q5SRE5 1749 aa18.82■□□□□ 0.6
TNFRSF1A-216ENST00000543995 EIF4A1P60842 406 aaKnown RBP18.81■□□□□ 0.6
TNFRSF1A-216ENST00000543995 TJP1Q07157 1748 aa18.8■□□□□ 0.6
TNFRSF1A-216ENST00000543995 ITPK1Q13572 414 aa18.8■□□□□ 0.6
TNFRSF1A-216ENST00000543995 VSIG10Q8N0Z9 540 aa18.8■□□□□ 0.6
TNFRSF1A-216ENST00000543995 TSR2Q969E8 191 aaKnown RBP18.8■□□□□ 0.6
TNFRSF1A-216ENST00000543995 MYH16Q9H6N6 1097 aa18.8■□□□□ 0.6
TNFRSF1A-216ENST00000543995 SNRPA1P09661 255 aaKnown RBP18.79■□□□□ 0.6
TNFRSF1A-216ENST00000543995 HMGB2P26583 209 aaKnown RBP18.79■□□□□ 0.6
TNFRSF1A-216ENST00000543995 DNAJC10Q8IXB1 793 aa18.79■□□□□ 0.6
TNFRSF1A-216ENST00000543995 YTHDC1Q96MU7 727 aaKnown RBP18.79■□□□□ 0.6
TNFRSF1A-216ENST00000543995 TEX13AQ9BXU3 409 aaPredicted RBP18.79■□□□□ 0.6
TNFRSF1A-216ENST00000543995 SPINK5Q9NQ38 1064 aaPredicted RBP18.79■□□□□ 0.6
TNFRSF1A-216ENST00000543995 COL5A3P25940 1745 aaPredicted RBP18.78■□□□□ 0.6
TNFRSF1A-216ENST00000543995 E9PSI1 815 aa18.78■□□□□ 0.6
TNFRSF1A-216ENST00000543995 LINC00116Q8NCU8 138 aa18.78■□□□□ 0.6
TNFRSF1A-216ENST00000543995 ZBED9Q6R2W3 1325 aa18.78■□□□□ 0.6
TNFRSF1A-216ENST00000543995 CICQ96RK0 1608 aaPredicted RBP18.77■□□□□ 0.6
TNFRSF1A-216ENST00000543995 NBPF14Q5TI25 921 aa18.77■□□□□ 0.6
TNFRSF1A-216ENST00000543995 FANCIQ9NVI1 1328 aa18.77■□□□□ 0.6
TNFRSF1A-216ENST00000543995 C4BP0C0L5 1744 aa18.77■□□□□ 0.59
TNFRSF1A-216ENST00000543995 PRAMEF22A3QJZ6 481 aa18.76■□□□□ 0.59
TNFRSF1A-216ENST00000543995 GIGYF1O75420 1035 aaPredicted RBP18.76■□□□□ 0.59
TNFRSF1A-216ENST00000543995 STARD3NLO95772 234 aa18.76■□□□□ 0.59
TNFRSF1A-216ENST00000543995 KRT24Q2M2I5 525 aa18.76■□□□□ 0.59
TNFRSF1A-216ENST00000543995 CDCA7LQ96GN5 454 aa18.76■□□□□ 0.59
TNFRSF1A-216ENST00000543995 LAMB4A4D0S4 1761 aa18.76■□□□□ 0.59
TNFRSF1A-216ENST00000543995 AK7Q96M32 723 aa18.75■□□□□ 0.59
TNFRSF1A-216ENST00000543995 SLFN5Q08AF3 891 aa18.74■□□□□ 0.59
TNFRSF1A-216ENST00000543995 STK32BQ9NY57 414 aa18.74■□□□□ 0.59
TNFRSF1A-216ENST00000543995 USP16Q9Y5T5 823 aa18.74■□□□□ 0.59
TNFRSF1A-216ENST00000543995 ELL2O00472 640 aaPredicted RBP18.74■□□□□ 0.59
TNFRSF1A-216ENST00000543995 CYP19A1P11511 503 aaPredicted RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms