RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 TTC5Q8N0Z6 440 aa8.28□□□□□ -1.08
LTBR-212ENST00000543542 PIGBQ92521 554 aa8.28□□□□□ -1.08
LTBR-212ENST00000543542 SMARCC1Q92922 1105 aaPredicted RBP8.28□□□□□ -1.08
LTBR-212ENST00000543542 RBM42Q9BTD8 480 aaKnown RBP8.28□□□□□ -1.08
LTBR-212ENST00000543542 LAS1LQ9Y4W2 734 aaKnown RBP8.28□□□□□ -1.08
LTBR-212ENST00000543542 BTBD11A6QL63 1104 aa8.27□□□□□ -1.09
LTBR-212ENST00000543542 EZH2Q15910 746 aaKnown RBP8.27□□□□□ -1.09
LTBR-212ENST00000543542 IL17REQ8NFR9 667 aa8.27□□□□□ -1.09
LTBR-212ENST00000543542 THUMPD2Q9BTF0 503 aaKnown RBP8.27□□□□□ -1.09
LTBR-212ENST00000543542 PALLDQ8WX93 1383 aa8.26□□□□□ -1.09
LTBR-212ENST00000543542 PLSCR1O15162 318 aa8.26□□□□□ -1.09
LTBR-212ENST00000543542 PTCD1O75127 700 aaKnown RBP8.26□□□□□ -1.09
LTBR-212ENST00000543542 TXNRD1Q16881 649 aa8.26□□□□□ -1.09
LTBR-212ENST00000543542 CCNL1Q9UK58 526 aaPredicted RBP8.26□□□□□ -1.09
LTBR-212ENST00000543542 ASAP1Q9ULH1 1129 aa8.26□□□□□ -1.09
LTBR-212ENST00000543542 RGPD3A6NKT7 1758 aaPredicted RBP8.25□□□□□ -1.09
LTBR-212ENST00000543542 RGPD4Q7Z3J3 1758 aa8.25□□□□□ -1.09
LTBR-212ENST00000543542 ADAMTS7Q9UKP4 1686 aa8.25□□□□□ -1.09
LTBR-212ENST00000543542 CALD1Q05682 793 aaKnown RBP8.25□□□□□ -1.09
LTBR-212ENST00000543542 SLC39A6Q13433 755 aa8.25□□□□□ -1.09
LTBR-212ENST00000543542 TAF7Q15545 349 aaPredicted RBP8.25□□□□□ -1.09
LTBR-212ENST00000543542 NBPF14Q5TI25 921 aa8.25□□□□□ -1.09
LTBR-212ENST00000543542 ATG3Q9NT62 314 aa8.25□□□□□ -1.09
LTBR-212ENST00000543542 MRC1P22897 1456 aa8.25□□□□□ -1.09
LTBR-212ENST00000543542 SIPA1L3O60292 1781 aaPredicted RBP8.25□□□□□ -1.09
LTBR-212ENST00000543542 CEMIPQ8WUJ3 1361 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 LY75O60449 1722 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 HMGB2P26583 209 aaKnown RBP8.24□□□□□ -1.09
LTBR-212ENST00000543542 ATP6V1AP38606 617 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 KCNQ4P56696 695 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 SLC27A3Q5K4L6 730 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 CAMKK2Q96RR4 588 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 MIS18AQ9NYP9 233 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 TSPYL4Q9UJ04 414 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 TRIM35Q9UPQ4 493 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 RREB1Q92766 1687 aa8.24□□□□□ -1.09
LTBR-212ENST00000543542 LOC102724428A0A0B4J2F2 783 aa8.23□□□□□ -1.09
LTBR-212ENST00000543542 SIK1P57059 783 aa8.23□□□□□ -1.09
LTBR-212ENST00000543542 ZNF790Q6PG37 636 aa8.23□□□□□ -1.09
LTBR-212ENST00000543542 FMNL2Q96PY5 1086 aa8.23□□□□□ -1.09
LTBR-212ENST00000543542 STK32BQ9NY57 414 aa8.23□□□□□ -1.09
LTBR-212ENST00000543542 NUP188Q5SRE5 1749 aa8.23□□□□□ -1.09
LTBR-212ENST00000543542 PAPPAQ13219 1627 aa8.22□□□□□ -1.09
LTBR-212ENST00000543542 C5P01031 1676 aa8.22□□□□□ -1.09
LTBR-212ENST00000543542 GNAI1P63096 354 aa8.22□□□□□ -1.09
LTBR-212ENST00000543542 HNRNPUQ00839 825 aaKnown RBP eCLIP8.22□□□□□ -1.09
LTBR-212ENST00000543542 NGEFQ8N5V2 710 aa8.22□□□□□ -1.09
LTBR-212ENST00000543542 AK7Q96M32 723 aa8.22□□□□□ -1.09
LTBR-212ENST00000543542 KDM3BQ7LBC6 1761 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 UBR2Q8IWV8 1755 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 MSH5O43196 834 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 KCNQ3O43525 872 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 CCDC27Q2M243 656 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 NPM2Q86SE8 214 aaKnown RBP8.21□□□□□ -1.1
LTBR-212ENST00000543542 WWC1Q8IX03 1113 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 PROM2Q8N271 834 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 ZNF496Q96IT1 587 aaPredicted RBP8.21□□□□□ -1.1
LTBR-212ENST00000543542 LRRC4BQ9NT99 713 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 TAF1LQ8IZX4 1826 aa8.21□□□□□ -1.1
LTBR-212ENST00000543542 NCBP3Q53F19 620 aaKnown RBP8.2□□□□□ -1.1
LTBR-212ENST00000543542 WDR63Q8IWG1 891 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 DNAJC10Q8IXB1 793 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 CFAP44Q96MT7 982 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 TEX13AQ9BXU3 409 aaPredicted RBP8.2□□□□□ -1.1
LTBR-212ENST00000543542 IFT57Q9NWB7 429 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 BABAM1Q9NWV8 329 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 TFCP2L1Q9NZI6 479 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 HEG1Q9ULI3 1381 aa8.2□□□□□ -1.1
LTBR-212ENST00000543542 KCPQ6ZWJ8 1503 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 ZNF831Q5JPB2 1677 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 PSDA5PKW4 1024 aaPredicted RBP8.19□□□□□ -1.1
LTBR-212ENST00000543542 PHF14O94880 888 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 STARD3NLO95772 234 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 SNRPA1P09661 255 aaKnown RBP8.19□□□□□ -1.1
LTBR-212ENST00000543542 ITPK1Q13572 414 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 R3HDM1Q15032 1099 aaKnown RBP8.19□□□□□ -1.1
LTBR-212ENST00000543542 SLC15A2Q16348 729 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 VSIG10Q8N0Z9 540 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 LINC00116Q8NCU8 138 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 ARXQ96QS3 562 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 MYH16Q9H6N6 1097 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 MBIPQ9NS73 344 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 ZNF330Q9Y3S2 320 aaPredicted RBP8.19□□□□□ -1.1
LTBR-212ENST00000543542 C4BP0C0L5 1744 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 TJP1Q07157 1748 aa8.19□□□□□ -1.1
LTBR-212ENST00000543542 COL5A3P25940 1745 aaPredicted RBP8.18□□□□□ -1.1
LTBR-212ENST00000543542 CHL1O00533 1208 aa8.18□□□□□ -1.1
LTBR-212ENST00000543542 GNPATO15228 680 aa8.18□□□□□ -1.1
LTBR-212ENST00000543542 EIF2S2P20042 333 aaKnown RBP8.18□□□□□ -1.1
LTBR-212ENST00000543542 EIF4A1P60842 406 aaKnown RBP8.18□□□□□ -1.1
LTBR-212ENST00000543542 GOLGA2Q08379 1002 aa8.18□□□□□ -1.1
LTBR-212ENST00000543542 TSR2Q969E8 191 aaKnown RBP8.18□□□□□ -1.1
LTBR-212ENST00000543542 YTHDC1Q96MU7 727 aaKnown RBP8.18□□□□□ -1.1
LTBR-212ENST00000543542 SLC4A9Q96Q91 983 aa8.18□□□□□ -1.1
LTBR-212ENST00000543542 IL16Q14005 1332 aa8.18□□□□□ -1.1
LTBR-212ENST00000543542 LAMB4A4D0S4 1761 aa8.17□□□□□ -1.1
LTBR-212ENST00000543542 PRAMEF22A3QJZ6 481 aa8.17□□□□□ -1.1
LTBR-212ENST00000543542 ELL2O00472 640 aaPredicted RBP8.17□□□□□ -1.1
LTBR-212ENST00000543542 CANXP27824 592 aaKnown RBP8.17□□□□□ -1.1
LTBR-212ENST00000543542 CRKLP46109 303 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms