RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ATP7AQ04656 1500 aa15.42■□□□□ 0.06
SFSWAP-209ENST00000540469 TPM3P06753 285 aa15.42■□□□□ 0.06
SFSWAP-209ENST00000540469 SMC3Q9UQE7 1217 aa15.42■□□□□ 0.06
SFSWAP-209ENST00000540469 ATP6V1DQ9Y5K8 247 aa15.42■□□□□ 0.06
SFSWAP-209ENST00000540469 SETBP1Q9Y6X0 1596 aa15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 UBE2HP62256 183 aa15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 ZNF592Q92610 1267 aa15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 C16orf45Q96MC5 204 aaPredicted RBP15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 LRRC7Q96NW7 1537 aa15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 TULP4Q9NRJ4 1543 aa15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 COL3A1P02461 1466 aaPredicted RBP15.41■□□□□ 0.06
SFSWAP-209ENST00000540469 SLC4A2P04920 1241 aa15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 SPTLC3Q9NUV7 552 aa15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 MROH2AA6NES4 1674 aa15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 PAXIP1Q6ZW49 1069 aaPredicted RBP15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 NRXN1Q9ULB1 1477 aa15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 KIAA1524Q8TCG1 905 aa15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 CDK19Q9BWU1 502 aa15.4■□□□□ 0.06
SFSWAP-209ENST00000540469 VPS37CA5D8V6 355 aaPredicted RBP15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 DTNBO60941 627 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 FAM135BQ49AJ0 1406 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 RTL1A6NKG5 1358 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 F6X3S4 739 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 LRRCC1Q9C099 1032 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 CCDC192P0DO97 292 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 ZSCAN22P10073 491 aaPredicted RBP15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 ANAPC15P60006 121 aa15.39■□□□□ 0.05
SFSWAP-209ENST00000540469 STX6O43752 255 aa15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 ZNF853P0CG23 659 aa15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 PTGS1P23219 599 aa15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 PPRC1Q5VV67 1664 aaKnown RBP15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 GOLGA6L4A6NEF3 574 aa15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 TSPOAP1O95153 1857 aa15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 MAP4K4O95819 1239 aaPredicted RBP15.38■□□□□ 0.05
SFSWAP-209ENST00000540469 CHMLP26374 656 aa15.37■□□□□ 0.05
SFSWAP-209ENST00000540469 CHMP4AQ9BY43 222 aa15.37■□□□□ 0.05
SFSWAP-209ENST00000540469 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.37■□□□□ 0.05
SFSWAP-209ENST00000540469 EFCAB6Q5THR3 1501 aa15.37■□□□□ 0.05
SFSWAP-209ENST00000540469 ADGRB1O14514 1584 aa15.37■□□□□ 0.05
SFSWAP-209ENST00000540469 RRS1Q15050 365 aaKnown RBP15.37■□□□□ 0.05
SFSWAP-209ENST00000540469 KIF24Q5T7B8 1368 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 ATP10DQ9P241 1426 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 MCM10Q7L590 875 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 CCDC112Q8NEF3 446 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 FEZ1Q99689 392 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 TRIM5Q9C035 493 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 ZFYVE9O95405 1425 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 GNAI2P04899 355 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 CAMK4Q16566 473 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 KCNF1Q9H3M0 494 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 DEPDC5O75140 1603 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 RIMS2Q9UQ26 1411 aa15.36■□□□□ 0.05
SFSWAP-209ENST00000540469 SYT1P21579 422 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 TPD52L1Q16890 204 aaPredicted RBP15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 TMEM51Q9NW97 253 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 OGFRQ9NZT2 677 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 TNNT1P13805 278 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 DNM1Q05193 864 aaKnown RBP15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 CCDC186Q7Z3E2 898 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 IL1RAPL2Q9NP60 686 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 STAG3Q9UJ98 1225 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 PNPLA6Q8IY17 1366 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 F13A1P00488 732 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 RGS12O14924 1447 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 GLI2P10070 1586 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 NEURL4Q96JN8 1562 aa15.35■□□□□ 0.05
SFSWAP-209ENST00000540469 ADGRB3O60242 1522 aa15.34■□□□□ 0.05
SFSWAP-209ENST00000540469 TAF3Q5VWG9 929 aa15.34■□□□□ 0.05
SFSWAP-209ENST00000540469 INO80Q9ULG1 1556 aaPredicted RBP15.34■□□□□ 0.05
SFSWAP-209ENST00000540469 MIS18AQ9NYP9 233 aa15.34■□□□□ 0.05
SFSWAP-209ENST00000540469 PTPRCP08575 1304 aa15.34■□□□□ 0.05
SFSWAP-209ENST00000540469 CCDC83Q8IWF9 413 aa15.33■□□□□ 0.05
SFSWAP-209ENST00000540469 OSBPL3Q9H4L5 887 aa15.33■□□□□ 0.05
SFSWAP-209ENST00000540469 NPATQ14207 1427 aa15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 NME9Q86XW9 330 aa15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 ANKRD7Q92527 254 aa15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 ZC3H13Q5T200 1668 aaKnown RBP15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 IL13P35225 146 aa15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 CKAP2LQ8IYA6 745 aa15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 NECTIN2Q92692 538 aa15.33■□□□□ 0.04
SFSWAP-209ENST00000540469 NCBP1Q09161 790 aaKnown RBP15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 LRMPQ12912 555 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 SULT6B1Q6IMI4 303 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 LUZP1Q86V48 1076 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 COG3Q96JB2 828 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 STK31Q9BXU1 1019 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 VWDEQ8N2E2 1590 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 CCT4P50991 539 aaKnown RBP15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 AK2P54819 239 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 MAP3K11Q16584 847 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 NUTM1Q86Y26 1132 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 NUP62CLQ9H1M0 184 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 DNAJC5Q9H3Z4 198 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 ZRANB1Q9UGI0 708 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 LIMCH1Q9UPQ0 1083 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 TCHHQ07283 1943 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 IFT172Q9UG01 1749 aa15.32■□□□□ 0.04
SFSWAP-209ENST00000540469 SOX12O15370 315 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 AP5Z1O43299 807 aa15.31■□□□□ 0.04
SFSWAP-209ENST00000540469 FERMT3Q86UX7 667 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms