RNA–Protein interactions for RNA: ENST00000538886.5

GGA3-202, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene GGA3, Length 3,766 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-202ENST00000538886 APBB1O00213 710 aa11.16□□□□□ -0.62
GGA3-202ENST00000538886 R3HDM1Q15032 1099 aaKnown RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 TWISTNBQ3B726 338 aaPredicted RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 SMARCC1Q92922 1105 aaPredicted RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 CCDC85AQ96PX6 553 aaPredicted RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 STRCP1A6NGW2 1772 aa11.16□□□□□ -0.62
GGA3-202ENST00000538886 SLC4A2P04920 1241 aa11.16□□□□□ -0.62
GGA3-202ENST00000538886 ANP32AP39687 249 aaKnown RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 EZH2Q15910 746 aaKnown RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 ILDR2Q71H61 639 aa11.16□□□□□ -0.62
GGA3-202ENST00000538886 CCDC24Q8N4L8 307 aa11.16□□□□□ -0.62
GGA3-202ENST00000538886 IGSF1Q8N6C5 1336 aa11.16□□□□□ -0.62
GGA3-202ENST00000538886 RGPD8O14715 1765 aaPredicted RBP11.16□□□□□ -0.62
GGA3-202ENST00000538886 CD163L1Q9NR16 1453 aa11.15□□□□□ -0.62
GGA3-202ENST00000538886 DUSP27Q5VZP5 1158 aa11.15□□□□□ -0.62
GGA3-202ENST00000538886 ZNF496Q96IT1 587 aaPredicted RBP11.15□□□□□ -0.62
GGA3-202ENST00000538886 PXDNQ92626 1479 aa11.15□□□□□ -0.62
GGA3-202ENST00000538886 PLIN1O60240 522 aa11.15□□□□□ -0.62
GGA3-202ENST00000538886 A1BGP04217 495 aa11.15□□□□□ -0.62
GGA3-202ENST00000538886 RGS17Q9UGC6 210 aaPredicted RBP11.15□□□□□ -0.62
GGA3-202ENST00000538886 SRCAPQ6ZRS2 3230 aa11.15□□□□□ -0.62
GGA3-202ENST00000538886 LOC102724428A0A0B4J2F2 783 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 ZBTB7AO95365 584 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 SIK1P57059 783 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 ZNF790Q6PG37 636 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 SLC52A2Q9HAB3 445 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 RTCBQ9Y3I0 505 aaKnown RBP11.14□□□□□ -0.63
GGA3-202ENST00000538886 OVOS2A0A0J9YW53 1432 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 OVOS2Q6IE36 1432 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 KIAA1210Q9ULL0 1709 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 KIF6Q6ZMV9 814 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.14□□□□□ -0.63
GGA3-202ENST00000538886 IFT172Q9UG01 1749 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 E9PSI1 815 aa11.14□□□□□ -0.63
GGA3-202ENST00000538886 MAP3K5Q99683 1374 aa11.13□□□□□ -0.63
GGA3-202ENST00000538886 JARID2Q92833 1246 aaPredicted RBP11.13□□□□□ -0.63
GGA3-202ENST00000538886 SNRPA1P09661 255 aaKnown RBP11.13□□□□□ -0.63
GGA3-202ENST00000538886 NEXNQ0ZGT2 675 aa11.13□□□□□ -0.63
GGA3-202ENST00000538886 TXNRD1Q16881 649 aa11.13□□□□□ -0.63
GGA3-202ENST00000538886 BARGINQ6ZT62 677 aa11.13□□□□□ -0.63
GGA3-202ENST00000538886 MBIPQ9NS73 344 aa11.13□□□□□ -0.63
GGA3-202ENST00000538886 NWD1Q149M9 1564 aa11.12□□□□□ -0.63
GGA3-202ENST00000538886 PRAMEF22A3QJZ6 481 aa11.12□□□□□ -0.63
GGA3-202ENST00000538886 CPDO75976 1380 aa11.12□□□□□ -0.63
GGA3-202ENST00000538886 BLMP54132 1417 aaPredicted RBP11.12□□□□□ -0.63
GGA3-202ENST00000538886 ITPRIPQ8IWB1 547 aa11.12□□□□□ -0.63
GGA3-202ENST00000538886 TAF7LQ5H9L4 462 aa11.12□□□□□ -0.63
GGA3-202ENST00000538886 DAXXQ9UER7 740 aaPredicted RBP11.12□□□□□ -0.63
GGA3-202ENST00000538886 USP16Q9Y5T5 823 aa11.12□□□□□ -0.63
GGA3-202ENST00000538886 ATP5J2-PTCD1G3V325 749 aa11.11□□□□□ -0.63
GGA3-202ENST00000538886 C9orf78Q9NZ63 289 aaPredicted RBP11.11□□□□□ -0.63
GGA3-202ENST00000538886 RTL1A6NKG5 1358 aa11.11□□□□□ -0.63
GGA3-202ENST00000538886 DCAF8L1A6NGE4 600 aa11.11□□□□□ -0.63
GGA3-202ENST00000538886 OS9Q13438 667 aaPredicted RBP11.11□□□□□ -0.63
GGA3-202ENST00000538886 TRAPPC3LQ5T215 181 aa11.11□□□□□ -0.63
GGA3-202ENST00000538886 CCDC30Q5VVM6 783 aa11.11□□□□□ -0.63
GGA3-202ENST00000538886 TMX4Q9H1E5 349 aaPredicted RBP11.11□□□□□ -0.63
GGA3-202ENST00000538886 NPC1L1Q9UHC9 1359 aa11.11□□□□□ -0.63
GGA3-202ENST00000538886 DDX58O95786 925 aaKnown RBP11.11□□□□□ -0.63
GGA3-202ENST00000538886 CAMTA1Q9Y6Y1 1673 aa11.1□□□□□ -0.63
GGA3-202ENST00000538886 LRP6O75581 1613 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 ERVV-2B6SEH9 535 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 TSPYL6Q8N831 410 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 C8orf58Q8NAV2 365 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 CFAP44Q96MT7 982 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 CHMP4AQ9BY43 222 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 RCAN3Q9UKA8 241 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 COL5A2P05997 1499 aaPredicted RBP11.09□□□□□ -0.63
GGA3-202ENST00000538886 CHPF2Q9P2E5 772 aa11.09□□□□□ -0.63
GGA3-202ENST00000538886 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.08□□□□□ -0.63
GGA3-202ENST00000538886 F6X3S4 739 aa11.08□□□□□ -0.63
GGA3-202ENST00000538886 COPS6Q7L5N1 327 aa11.08□□□□□ -0.63
GGA3-202ENST00000538886 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.08□□□□□ -0.642e-6■□□□□ 11
GGA3-202ENST00000538886 FMN2Q9NZ56 1722 aa11.08□□□□□ -0.64
GGA3-202ENST00000538886 PALLDQ8WX93 1383 aa11.08□□□□□ -0.64
GGA3-202ENST00000538886 IQSEC2Q5JU85 1478 aa11.08□□□□□ -0.64
GGA3-202ENST00000538886 G3V3G9 751 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 IPO8O15397 1037 aaKnown RBP11.07□□□□□ -0.64
GGA3-202ENST00000538886 DCAF8Q5TAQ9 597 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 DZIP3Q86Y13 1208 aaKnown RBP11.07□□□□□ -0.64
GGA3-202ENST00000538886 ATG3Q9NT62 314 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 BCAR3O75815 825 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 POLD1P28340 1107 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 XAGE3Q8WTP9 111 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 TRIM35Q9UPQ4 493 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 ZBTB1Q9Y2K1 713 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 BCL9LQ86UU0 1499 aa11.07□□□□□ -0.64
GGA3-202ENST00000538886 SPINK5Q9NQ38 1064 aaPredicted RBP11.06□□□□□ -0.64
GGA3-202ENST00000538886 ZNF622Q969S3 477 aaKnown RBP eCLIP11.06□□□□□ -0.647e-7■■□□□ 12.1
GGA3-202ENST00000538886 CRKLP46109 303 aaKnown RBP11.06□□□□□ -0.64
GGA3-202ENST00000538886 MYD88Q99836 296 aa11.06□□□□□ -0.64
GGA3-202ENST00000538886 TEX13AQ9BXU3 409 aaPredicted RBP11.06□□□□□ -0.64
GGA3-202ENST00000538886 IFT57Q9NWB7 429 aa11.06□□□□□ -0.64
GGA3-202ENST00000538886 NIP7Q9Y221 180 aaKnown RBP eCLIP11.06□□□□□ -0.64
GGA3-202ENST00000538886 OVOS2A0A0G2JMS6 1433 aa11.05□□□□□ -0.64
GGA3-202ENST00000538886 NBPF5PQ86XG9 351 aaPredicted RBP11.05□□□□□ -0.64
GGA3-202ENST00000538886 WDR63Q8IWG1 891 aa11.05□□□□□ -0.64
GGA3-202ENST00000538886 ZMYND15Q9H091 742 aa11.05□□□□□ -0.64
GGA3-202ENST00000538886 SRP68Q9UHB9 627 aaKnown RBP11.05□□□□□ -0.64
GGA3-202ENST00000538886 KIF24Q5T7B8 1368 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms