RNA–Protein interactions for RNA: ENST00000533059.5

CHID1-222, Transcript of chitinase domain containing 1, human

TSL 3

Gene CHID1, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHID1-222	ENST00000533059	PHACTR3	Q96KR7	559 aa		18.34	■□□□□ 0.53
CHID1-222	ENST00000533059	SLC52A2	Q9HAB3	445 aa		18.34	■□□□□ 0.53
CHID1-222	ENST00000533059	LGR6	Q9HBX8	967 aa		18.34	■□□□□ 0.53
CHID1-222	ENST00000533059	ATG3	Q9NT62	314 aa		18.34	■□□□□ 0.53
CHID1-222	ENST00000533059	TFCP2L1	Q9NZI6	479 aa		18.34	■□□□□ 0.53
CHID1-222	ENST00000533059	SCN11A	Q9UI33	1791 aa		18.33	■□□□□ 0.53
CHID1-222	ENST00000533059	ATP6V1A	P38606	617 aa		18.32	■□□□□ 0.52
CHID1-222	ENST00000533059	ZNF827	Q17R98	1081 aa		18.32	■□□□□ 0.52
CHID1-222	ENST00000533059	AK7	Q96M32	723 aa		18.32	■□□□□ 0.52
CHID1-222	ENST00000533059	MRC1	P22897	1456 aa		18.32	■□□□□ 0.52
CHID1-222	ENST00000533059	C5	P01031	1676 aa		18.31	■□□□□ 0.52
CHID1-222	ENST00000533059	MSH5	O43196	834 aa		18.3	■□□□□ 0.52
CHID1-222	ENST00000533059	PTCD1	O75127	700 aa	Known RBP	18.3	■□□□□ 0.52
CHID1-222	ENST00000533059	TTC5	Q8N0Z6	440 aa		18.3	■□□□□ 0.52
CHID1-222	ENST00000533059	AKT1S1	Q96B36	256 aa		18.29	■□□□□ 0.52
CHID1-222	ENST00000533059	LRP5	O75197	1615 aa		18.29	■□□□□ 0.52
CHID1-222	ENST00000533059	CASZ1	Q86V15	1759 aa		18.28	■□□□□ 0.52
CHID1-222	ENST00000533059	ADAMTS7	Q9UKP4	1686 aa		18.28	■□□□□ 0.52
CHID1-222	ENST00000533059	TUBGCP6	Q96RT7	1819 aa		18.28	■□□□□ 0.52
CHID1-222	ENST00000533059	NFE2L2	Q16236	605 aa		18.27	■□□□□ 0.52
CHID1-222	ENST00000533059	MCM10	Q7L590	875 aa		18.27	■□□□□ 0.52
CHID1-222	ENST00000533059	IL17RE	Q8NFR9	667 aa		18.27	■□□□□ 0.52
CHID1-222	ENST00000533059	PLEKHF1	Q96S99	279 aa		18.27	■□□□□ 0.52
CHID1-222	ENST00000533059	SPON1	Q9HCB6	807 aa		18.27	■□□□□ 0.52
CHID1-222	ENST00000533059	C4B	P0C0L5	1744 aa		18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	HTATSF1	O43719	755 aa	Known RBP	18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	ZBTB7A	O95365	584 aa		18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	SLC39A6	Q13433	755 aa		18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	CCDC146	Q8IYE0	955 aa		18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	PPP1R1B	Q9UD71	204 aa	Predicted RBP	18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	VIRMA	Q69YN4	1812 aa	Known RBP	18.26	■□□□□ 0.51
CHID1-222	ENST00000533059	PHF14	O94880	888 aa		18.25	■□□□□ 0.51
CHID1-222	ENST00000533059	LINC00116	Q8NCU8	138 aa		18.25	■□□□□ 0.51
CHID1-222	ENST00000533059	BTBD11	A6QL63	1104 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	GNPAT	O15228	680 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	ITPK1	Q13572	414 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	DCTN1	Q14203	1278 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	FLAD1	Q8NFF5	587 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	MRS2	Q9HD23	443 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	CEMIP	Q8WUJ3	1361 aa		18.24	■□□□□ 0.51
CHID1-222	ENST00000533059	PNPLA7	Q6ZV29	1317 aa		18.23	■□□□□ 0.51
CHID1-222	ENST00000533059	LMOD3	Q0VAK6	560 aa		18.23	■□□□□ 0.51
CHID1-222	ENST00000533059	RUNDC1	Q96C34	613 aa		18.23	■□□□□ 0.51
CHID1-222	ENST00000533059	MTFR1L	Q9H019	292 aa		18.23	■□□□□ 0.51
CHID1-222	ENST00000533059	ADAMTS8	Q9UP79	889 aa		18.23	■□□□□ 0.51
CHID1-222	ENST00000533059	TAF1L	Q8IZX4	1826 aa		18.23	■□□□□ 0.51
CHID1-222	ENST00000533059	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.22	■□□□□ 0.51
CHID1-222	ENST00000533059	QSER1	Q2KHR3	1735 aa		18.22	■□□□□ 0.51
CHID1-222	ENST00000533059	ZNF831	Q5JPB2	1677 aa		18.22	■□□□□ 0.51
CHID1-222	ENST00000533059	RIPK4	P57078	832 aa		18.21	■□□□□ 0.51
CHID1-222	ENST00000533059	NEUROD2	Q15784	382 aa		18.21	■□□□□ 0.51
CHID1-222	ENST00000533059	ZNF790	Q6PG37	636 aa		18.21	■□□□□ 0.51
CHID1-222	ENST00000533059	SLC16A10	Q8TF71	515 aa		18.21	■□□□□ 0.51
CHID1-222	ENST00000533059	SRCAP	Q6ZRS2	3230 aa		18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	KCP	Q6ZWJ8	1503 aa		18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	SSFA2	P28290	1259 aa		18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	FMNL2	Q96PY5	1086 aa		18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	SLC4A9	Q96Q91	983 aa		18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	RTCB	Q9Y3I0	505 aa	Known RBP	18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	CNTNAP4	Q9C0A0	1308 aa		18.2	■□□□□ 0.5
CHID1-222	ENST00000533059	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.19	■□□□□ 0.5
CHID1-222	ENST00000533059	TMPO	P42166	694 aa	Known RBP	18.19	■□□□□ 0.5
CHID1-222	ENST00000533059	COL23A1	Q86Y22	540 aa	Predicted RBP	18.19	■□□□□ 0.5
CHID1-222	ENST00000533059	RRP7A	Q9Y3A4	280 aa	Known RBP	18.19	■□□□□ 0.5
CHID1-222	ENST00000533059	SIPA1L3	O60292	1781 aa	Predicted RBP	18.18	■□□□□ 0.5
CHID1-222	ENST00000533059	POLD1	P28340	1107 aa		18.18	■□□□□ 0.5
CHID1-222	ENST00000533059	DNAJC10	Q8IXB1	793 aa		18.18	■□□□□ 0.5
CHID1-222	ENST00000533059	VSIG10	Q8N0Z9	540 aa		18.18	■□□□□ 0.5
CHID1-222	ENST00000533059	PNISR	Q8TF01	805 aa	Known RBP	18.18	■□□□□ 0.5
CHID1-222	ENST00000533059	TJP1	Q07157	1748 aa		18.18	■□□□□ 0.5
CHID1-222	ENST00000533059	CRKL	P46109	303 aa	Known RBP	18.17	■□□□□ 0.5
CHID1-222	ENST00000533059	TAF7	Q15545	349 aa	Predicted RBP	18.17	■□□□□ 0.5
CHID1-222	ENST00000533059	RC3H1	Q5TC82	1133 aa	Known RBP	18.17	■□□□□ 0.5
CHID1-222	ENST00000533059	THUMPD2	Q9BTF0	503 aa	Known RBP	18.17	■□□□□ 0.5
CHID1-222	ENST00000533059	COL5A3	P25940	1745 aa	Predicted RBP	18.17	■□□□□ 0.5
CHID1-222	ENST00000533059	HEG1	Q9ULI3	1381 aa		18.17	■□□□□ 0.5
CHID1-222	ENST00000533059	DLG5	Q8TDM6	1919 aa		18.16	■□□□□ 0.5
CHID1-222	ENST00000533059	CCDC184	Q52MB2	194 aa		18.16	■□□□□ 0.5
CHID1-222	ENST00000533059	ZNF496	Q96IT1	587 aa	Predicted RBP	18.16	■□□□□ 0.5
CHID1-222	ENST00000533059	CIC	Q96RK0	1608 aa	Predicted RBP	18.16	■□□□□ 0.5
CHID1-222	ENST00000533059	UBR2	Q8IWV8	1755 aa		18.15	■□□□□ 0.5
CHID1-222	ENST00000533059	STARD3NL	O95772	234 aa		18.15	■□□□□ 0.5
CHID1-222	ENST00000533059	TRAPPC3L	Q5T215	181 aa		18.15	■□□□□ 0.5
CHID1-222	ENST00000533059	MSL1	Q68DK7	614 aa		18.15	■□□□□ 0.5
CHID1-222	ENST00000533059	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.15	■□□□□ 0.5
CHID1-222	ENST00000533059	CCDC87	Q9NVE4	849 aa		18.15	■□□□□ 0.5
CHID1-222	ENST00000533059	RPS6KA4	O75676	772 aa		18.14	■□□□□ 0.49
CHID1-222	ENST00000533059	ADRA2B	P18089	450 aa		18.14	■□□□□ 0.49
CHID1-222	ENST00000533059	RFC4	P35249	363 aa		18.14	■□□□□ 0.49
CHID1-222	ENST00000533059	SMIM5	Q71RC9	77 aa		18.14	■□□□□ 0.49
CHID1-222	ENST00000533059	UBR3	Q6ZT12	1888 aa		18.14	■□□□□ 0.49
CHID1-222	ENST00000533059	KCNQ3	O43525	872 aa		18.13	■□□□□ 0.49
CHID1-222	ENST00000533059	NPM2	Q86SE8	214 aa	Known RBP	18.13	■□□□□ 0.49
CHID1-222	ENST00000533059	TSPYL4	Q9UJ04	414 aa		18.13	■□□□□ 0.49
CHID1-222	ENST00000533059	APAF1	O14727	1248 aa		18.12	■□□□□ 0.49
CHID1-222	ENST00000533059	CYP19A1	P11511	503 aa	Predicted RBP	18.12	■□□□□ 0.49
CHID1-222	ENST00000533059	AMIGO3	Q86WK7	504 aa		18.12	■□□□□ 0.49
CHID1-222	ENST00000533059	KLHL34	Q8N239	644 aa		18.12	■□□□□ 0.49
CHID1-222	ENST00000533059	ARX	Q96QS3	562 aa		18.12	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms