RNA–Protein interactions for RNA: ENST00000526280.1

SMPD1-202, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,344 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-202ENST00000526280 MRC1P22897 1456 aa17.07■□□□□ 0.32
SMPD1-202ENST00000526280 DLG5Q8TDM6 1919 aa17.07■□□□□ 0.32
SMPD1-202ENST00000526280 RIPK4P57078 832 aa17.06■□□□□ 0.32
SMPD1-202ENST00000526280 TXNRD1Q16881 649 aa17.06■□□□□ 0.32
SMPD1-202ENST00000526280 MCM10Q7L590 875 aa17.06■□□□□ 0.32
SMPD1-202ENST00000526280 ATG3Q9NT62 314 aa17.06■□□□□ 0.32
SMPD1-202ENST00000526280 DCTN1Q14203 1278 aa17.05■□□□□ 0.32
SMPD1-202ENST00000526280 PALLDQ8WX93 1383 aa17.04■□□□□ 0.32
SMPD1-202ENST00000526280 TEFQ10587 303 aa17.04■□□□□ 0.32
SMPD1-202ENST00000526280 FAM9BQ8IZU0 186 aa17.04■□□□□ 0.32
SMPD1-202ENST00000526280 RRP7AQ9Y3A4 280 aaKnown RBP17.04■□□□□ 0.32
SMPD1-202ENST00000526280 APAF1O14727 1248 aa17.03■□□□□ 0.32
SMPD1-202ENST00000526280 NEUROD2Q15784 382 aa17.03■□□□□ 0.32
SMPD1-202ENST00000526280 SLC27A3Q5K4L6 730 aa17.03■□□□□ 0.32
SMPD1-202ENST00000526280 RREB1Q92766 1687 aa17.03■□□□□ 0.32
SMPD1-202ENST00000526280 LY75O60449 1722 aa17.03■□□□□ 0.32
SMPD1-202ENST00000526280 LMOD3Q0VAK6 560 aa17.02■□□□□ 0.32
SMPD1-202ENST00000526280 LRRC4BQ9NT99 713 aa17.02■□□□□ 0.32
SMPD1-202ENST00000526280 TRIM35Q9UPQ4 493 aa17.01■□□□□ 0.31
SMPD1-202ENST00000526280 SIPA1L3O60292 1781 aaPredicted RBP17■□□□□ 0.31
SMPD1-202ENST00000526280 LOC102724428A0A0B4J2F2 783 aa17■□□□□ 0.31
SMPD1-202ENST00000526280 KCNQ4P56696 695 aa17■□□□□ 0.31
SMPD1-202ENST00000526280 SIK1P57059 783 aa17■□□□□ 0.31
SMPD1-202ENST00000526280 SLC39A6Q13433 755 aa17■□□□□ 0.31
SMPD1-202ENST00000526280 THUMPD2Q9BTF0 503 aaKnown RBP17■□□□□ 0.31
SMPD1-202ENST00000526280 CCNL1Q9UK58 526 aaPredicted RBP17■□□□□ 0.31
SMPD1-202ENST00000526280 NUP188Q5SRE5 1749 aa17■□□□□ 0.31
SMPD1-202ENST00000526280 TAF7Q15545 349 aaPredicted RBP16.99■□□□□ 0.31
SMPD1-202ENST00000526280 BTBD11A6QL63 1104 aa16.98■□□□□ 0.31
SMPD1-202ENST00000526280 PTCD1O75127 700 aaKnown RBP16.97■□□□□ 0.31
SMPD1-202ENST00000526280 NBPF14Q5TI25 921 aa16.97■□□□□ 0.31
SMPD1-202ENST00000526280 ZNF790Q6PG37 636 aa16.97■□□□□ 0.31
SMPD1-202ENST00000526280 SLC4A9Q96Q91 983 aa16.97■□□□□ 0.31
SMPD1-202ENST00000526280 RBM42Q9BTD8 480 aaKnown RBP16.97■□□□□ 0.31
SMPD1-202ENST00000526280 PAPPAQ13219 1627 aa16.97■□□□□ 0.31
SMPD1-202ENST00000526280 HMGB2P26583 209 aaKnown RBP16.96■□□□□ 0.31
SMPD1-202ENST00000526280 ATP6V1AP38606 617 aa16.96■□□□□ 0.31
SMPD1-202ENST00000526280 NCBP3Q53F19 620 aaKnown RBP16.96■□□□□ 0.31
SMPD1-202ENST00000526280 PSDA5PKW4 1024 aaPredicted RBP16.96■□□□□ 0.3
SMPD1-202ENST00000526280 KCNQ3O43525 872 aa16.96■□□□□ 0.3
SMPD1-202ENST00000526280 ITPK1Q13572 414 aa16.96■□□□□ 0.3
SMPD1-202ENST00000526280 TTC5Q8N0Z6 440 aa16.96■□□□□ 0.3
SMPD1-202ENST00000526280 ANO8Q9HCE9 1232 aaPredicted RBP16.96■□□□□ 0.3
SMPD1-202ENST00000526280 SENP3-EIF4A1A0A087X0R7 540 aa16.95■□□□□ 0.3
SMPD1-202ENST00000526280 CCDC27Q2M243 656 aa16.95■□□□□ 0.3
SMPD1-202ENST00000526280 MIS18AQ9NYP9 233 aa16.95■□□□□ 0.3
SMPD1-202ENST00000526280 KCPQ6ZWJ8 1503 aa16.94■□□□□ 0.3
SMPD1-202ENST00000526280 ZNF831Q5JPB2 1677 aa16.94■□□□□ 0.3
SMPD1-202ENST00000526280 AKT1S1Q96B36 256 aa16.94■□□□□ 0.3
SMPD1-202ENST00000526280 ZNF496Q96IT1 587 aaPredicted RBP16.94■□□□□ 0.3
SMPD1-202ENST00000526280 BABAM1Q9NWV8 329 aa16.94■□□□□ 0.3
SMPD1-202ENST00000526280 UBR2Q8IWV8 1755 aa16.93■□□□□ 0.3
SMPD1-202ENST00000526280 TAF1LQ8IZX4 1826 aa16.93■□□□□ 0.3
SMPD1-202ENST00000526280 R3HDM1Q15032 1099 aaKnown RBP16.93■□□□□ 0.3
SMPD1-202ENST00000526280 SLC15A2Q16348 729 aa16.93■□□□□ 0.3
SMPD1-202ENST00000526280 VSIG10Q8N0Z9 540 aa16.93■□□□□ 0.3
SMPD1-202ENST00000526280 LINC00116Q8NCU8 138 aa16.93■□□□□ 0.3
SMPD1-202ENST00000526280 STK32BQ9NY57 414 aa16.93■□□□□ 0.3
SMPD1-202ENST00000526280 ZNF827Q17R98 1081 aa16.92■□□□□ 0.3
SMPD1-202ENST00000526280 WWC1Q8IX03 1113 aa16.92■□□□□ 0.3
SMPD1-202ENST00000526280 NGEFQ8N5V2 710 aa16.92■□□□□ 0.3
SMPD1-202ENST00000526280 FMNL2Q96PY5 1086 aa16.92■□□□□ 0.3
SMPD1-202ENST00000526280 C5P01031 1676 aa16.91■□□□□ 0.3
SMPD1-202ENST00000526280 CHL1O00533 1208 aa16.91■□□□□ 0.3
SMPD1-202ENST00000526280 CALD1Q05682 793 aaKnown RBP16.91■□□□□ 0.3
SMPD1-202ENST00000526280 TSPYL4Q9UJ04 414 aa16.91■□□□□ 0.3
SMPD1-202ENST00000526280 SRCAPQ6ZRS2 3230 aa16.91■□□□□ 0.3
SMPD1-202ENST00000526280 HEG1Q9ULI3 1381 aa16.9■□□□□ 0.3
SMPD1-202ENST00000526280 DNAJC10Q8IXB1 793 aa16.9■□□□□ 0.3
SMPD1-202ENST00000526280 CFAP44Q96MT7 982 aa16.9■□□□□ 0.3
SMPD1-202ENST00000526280 SALL2Q9Y467 1007 aaPredicted RBP16.9■□□□□ 0.3
SMPD1-202ENST00000526280 KDM3BQ7LBC6 1761 aa16.89■□□□□ 0.29
SMPD1-202ENST00000526280 C4BP0C0L5 1744 aa16.89■□□□□ 0.29
SMPD1-202ENST00000526280 CICQ96RK0 1608 aaPredicted RBP16.89■□□□□ 0.29
SMPD1-202ENST00000526280 ZNF853P0CG23 659 aa16.89■□□□□ 0.29
SMPD1-202ENST00000526280 RC3H1Q5TC82 1133 aaKnown RBP16.89■□□□□ 0.29
SMPD1-202ENST00000526280 TEX13AQ9BXU3 409 aaPredicted RBP16.89■□□□□ 0.29
SMPD1-202ENST00000526280 TJP1Q07157 1748 aa16.88■□□□□ 0.29
SMPD1-202ENST00000526280 CYP19A1P11511 503 aaPredicted RBP16.88■□□□□ 0.29
SMPD1-202ENST00000526280 EIF4A1P60842 406 aaKnown RBP16.88■□□□□ 0.29
SMPD1-202ENST00000526280 IFT57Q9NWB7 429 aa16.88■□□□□ 0.29
SMPD1-202ENST00000526280 TFCP2L1Q9NZI6 479 aa16.88■□□□□ 0.29
SMPD1-202ENST00000526280 LAS1LQ9Y4W2 734 aaKnown RBP16.88■□□□□ 0.29
SMPD1-202ENST00000526280 COL5A3P25940 1745 aaPredicted RBP16.88■□□□□ 0.29
SMPD1-202ENST00000526280 CNTNAP4Q9C0A0 1308 aa16.87■□□□□ 0.29
SMPD1-202ENST00000526280 SNRPA1P09661 255 aaKnown RBP16.87■□□□□ 0.29
SMPD1-202ENST00000526280 AK7Q96M32 723 aa16.87■□□□□ 0.29
SMPD1-202ENST00000526280 STARD3NLO95772 234 aa16.86■□□□□ 0.29
SMPD1-202ENST00000526280 CRKLP46109 303 aaKnown RBP16.86■□□□□ 0.29
SMPD1-202ENST00000526280 GNAI1P63096 354 aa16.86■□□□□ 0.29
SMPD1-202ENST00000526280 WDR63Q8IWG1 891 aa16.86■□□□□ 0.29
SMPD1-202ENST00000526280 MYH14Q7Z406 1995 aaKnown RBP16.85■□□□□ 0.29
SMPD1-202ENST00000526280 IL16Q14005 1332 aa16.85■□□□□ 0.29
SMPD1-202ENST00000526280 PRAMEF22A3QJZ6 481 aa16.85■□□□□ 0.29
SMPD1-202ENST00000526280 GIGYF1O75420 1035 aaPredicted RBP16.85■□□□□ 0.29
SMPD1-202ENST00000526280 INTS5Q6P9B9 1019 aaKnown RBP16.85■□□□□ 0.29
SMPD1-202ENST00000526280 MBIPQ9NS73 344 aa16.85■□□□□ 0.29
SMPD1-202ENST00000526280 PNPLA7Q6ZV29 1317 aa16.84■□□□□ 0.29
SMPD1-202ENST00000526280 GNPATO15228 680 aa16.84■□□□□ 0.29
SMPD1-202ENST00000526280 AMIGO3Q86WK7 504 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms