RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
NUP54-217ENST00000514987 ATP8B2P98198 1209 aa18.35■□□□□ 0.53
NUP54-217ENST00000514987 HDGFL1Q5TGJ6 251 aa18.35■□□□□ 0.53
NUP54-217ENST00000514987 NBPF6Q5VWK0 638 aa18.35■□□□□ 0.53
NUP54-217ENST00000514987 NBPF4Q96M43 638 aa18.35■□□□□ 0.53
NUP54-217ENST00000514987 MST1RQ04912 1400 aa18.35■□□□□ 0.53
NUP54-217ENST00000514987 ARHGEF25Q86VW2 580 aa18.34■□□□□ 0.53
NUP54-217ENST00000514987 KIF2CQ99661 725 aa18.34■□□□□ 0.53
NUP54-217ENST00000514987 GCP02774 474 aa18.34■□□□□ 0.53
NUP54-217ENST00000514987 RABEP1Q15276 862 aa18.34■□□□□ 0.53
NUP54-217ENST00000514987 C16orf71Q8IYS4 520 aaPredicted RBP18.34■□□□□ 0.53
NUP54-217ENST00000514987 USHBP1Q8N6Y0 703 aa18.34■□□□□ 0.53
NUP54-217ENST00000514987 LMTK3Q96Q04 1460 aa18.33■□□□□ 0.53
NUP54-217ENST00000514987 REC8O95072 547 aa18.33■□□□□ 0.52
NUP54-217ENST00000514987 DDIT3P35638 169 aa18.33■□□□□ 0.52
NUP54-217ENST00000514987 TRPM3Q9HCF6 1732 aaPredicted RBP18.32■□□□□ 0.52
NUP54-217ENST00000514987 CAMTA1Q9Y6Y1 1673 aa18.32■□□□□ 0.52
NUP54-217ENST00000514987 SDSP20132 328 aa18.32■□□□□ 0.52
NUP54-217ENST00000514987 MCM4P33991 863 aa18.32■□□□□ 0.52
NUP54-217ENST00000514987 EIF4A1P60842 406 aaKnown RBP18.32■□□□□ 0.52
NUP54-217ENST00000514987 TEFQ10587 303 aa18.32■□□□□ 0.52
NUP54-217ENST00000514987 LRRCC1Q9C099 1032 aa18.32■□□□□ 0.52
NUP54-217ENST00000514987 K7ELQ4 463 aaPredicted RBP18.31■□□□□ 0.52
NUP54-217ENST00000514987 ZNF530Q6P9A1 599 aaPredicted RBP18.31■□□□□ 0.52
NUP54-217ENST00000514987 SRCIN1Q9C0H9 1055 aa18.31■□□□□ 0.52
NUP54-217ENST00000514987 SMARCA5O60264 1052 aaPredicted RBP18.3■□□□□ 0.52
NUP54-217ENST00000514987 PTMSP20962 102 aa18.3■□□□□ 0.52
NUP54-217ENST00000514987 C1orf141Q5JVX7 400 aa18.3■□□□□ 0.52
NUP54-217ENST00000514987 DDX11L8A8MPP1 907 aa18.3■□□□□ 0.52
NUP54-217ENST00000514987 UBTFL1P0CB47 393 aaPredicted RBP18.3■□□□□ 0.52
NUP54-217ENST00000514987 PDE1AP54750 535 aa18.3■□□□□ 0.52
NUP54-217ENST00000514987 PROSER2Q86WR7 435 aaPredicted RBP18.3■□□□□ 0.52
NUP54-217ENST00000514987 SPRYD3Q8NCJ5 442 aa18.3■□□□□ 0.52
NUP54-217ENST00000514987 RBM33Q96EV2 1170 aaKnown RBP18.3■□□□□ 0.52
NUP54-217ENST00000514987 USP26Q9BXU7 913 aa18.3■□□□□ 0.52
NUP54-217ENST00000514987 IBTKQ9P2D0 1353 aaPredicted RBP18.29■□□□□ 0.52
NUP54-217ENST00000514987 RGPD2P0DJD1 1756 aa18.29■□□□□ 0.52
NUP54-217ENST00000514987 OTUD7AQ8TE49 926 aaPredicted RBP18.29■□□□□ 0.52
NUP54-217ENST00000514987 ORAI2Q96SN7 254 aa18.29■□□□□ 0.52
NUP54-217ENST00000514987 C19orf44Q9H6X5 657 aa18.29■□□□□ 0.52
NUP54-217ENST00000514987 AOX1Q06278 1338 aa18.28■□□□□ 0.52
NUP54-217ENST00000514987 APBB1O00213 710 aa18.28■□□□□ 0.52
NUP54-217ENST00000514987 RAB11FIP3O75154 756 aa18.28■□□□□ 0.52
NUP54-217ENST00000514987 HSP90AA1P07900 732 aaKnown RBP18.28■□□□□ 0.52
NUP54-217ENST00000514987 KRT28Q7Z3Y7 464 aa18.28■□□□□ 0.52
NUP54-217ENST00000514987 NECTIN2Q92692 538 aa18.28■□□□□ 0.52
NUP54-217ENST00000514987 USP44Q9H0E7 712 aa18.28■□□□□ 0.52
NUP54-217ENST00000514987 ZBTB7CA1YPR0 619 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 BTBD11A6QL63 1104 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 ERC2O15083 957 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 ANKRD24Q8TF21 1146 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 LGR6Q9HBX8 967 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 STAP2Q9UGK3 403 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 HDAC5Q9UQL6 1122 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 C1orf167Q5SNV9 1468 aa18.27■□□□□ 0.52
NUP54-217ENST00000514987 SALL3Q9BXA9 1300 aa18.27■□□□□ 0.51
NUP54-217ENST00000514987 RNMTO43148 476 aaKnown RBP18.26■□□□□ 0.51
NUP54-217ENST00000514987 SSH3Q8TE77 659 aa18.26■□□□□ 0.51
NUP54-217ENST00000514987 LRRFIP2Q9Y608 721 aaKnown RBP18.26■□□□□ 0.51
NUP54-217ENST00000514987 PLEKHG2Q9H7P9 1386 aa18.26■□□□□ 0.51
NUP54-217ENST00000514987 IL27Q8NEV9 243 aa18.25■□□□□ 0.51
NUP54-217ENST00000514987 GBP4Q96PP9 640 aa18.25■□□□□ 0.51
NUP54-217ENST00000514987 EXOC6BQ9Y2D4 811 aa18.25■□□□□ 0.51
NUP54-217ENST00000514987 MX1P20591 662 aa18.25■□□□□ 0.51
NUP54-217ENST00000514987 L1TD1Q5T7N2 865 aaKnown RBP18.25■□□□□ 0.51
NUP54-217ENST00000514987 LRRC59Q96AG4 307 aaKnown RBP18.25■□□□□ 0.51
NUP54-217ENST00000514987 DBF4Q9UBU7 674 aaPredicted RBP18.25■□□□□ 0.51
NUP54-217ENST00000514987 DCCP43146 1447 aa18.25■□□□□ 0.51
NUP54-217ENST00000514987 DNAAF4Q8WXU2 420 aa18.24■□□□□ 0.51
NUP54-217ENST00000514987 TUBGCP6Q96RT7 1819 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 ALS2Q96Q42 1657 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 ADAMTS7Q9UKP4 1686 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 PNMA6EA0A0J9YXQ4 647 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 EIF2S2P20042 333 aaKnown RBP18.23■□□□□ 0.51
NUP54-217ENST00000514987 RAB3GAP1Q15042 981 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 HSP90AB4PQ58FF6 505 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 PHAXQ9H814 394 aaKnown RBP18.23■□□□□ 0.51
NUP54-217ENST00000514987 ABCC6O95255 1503 aa18.23■□□□□ 0.51
NUP54-217ENST00000514987 EPB41L2O43491 1005 aaKnown RBP18.22■□□□□ 0.51
NUP54-217ENST00000514987 ST18O60284 1047 aa18.22■□□□□ 0.51
NUP54-217ENST00000514987 POLA2Q14181 598 aa18.22■□□□□ 0.51
NUP54-217ENST00000514987 LMOD2Q6P5Q4 547 aa18.22■□□□□ 0.51
NUP54-217ENST00000514987 CHPF2Q9P2E5 772 aa18.22■□□□□ 0.51
NUP54-217ENST00000514987 HEG1Q9ULI3 1381 aa18.22■□□□□ 0.51
NUP54-217ENST00000514987 MPRIPQ6WCQ1 1025 aa18.21■□□□□ 0.51
NUP54-217ENST00000514987 SIPA1L3O60292 1781 aaPredicted RBP18.21■□□□□ 0.51
NUP54-217ENST00000514987 ALDH1L1O75891 902 aa18.21■□□□□ 0.51
NUP54-217ENST00000514987 BEND3Q5T5X7 828 aa18.21■□□□□ 0.51
NUP54-217ENST00000514987 TRAK2O60296 914 aa18.2■□□□□ 0.5
NUP54-217ENST00000514987 ATF3P18847 181 aa18.2■□□□□ 0.5
NUP54-217ENST00000514987 MCCP23508 829 aa18.2■□□□□ 0.5
NUP54-217ENST00000514987 XPCQ01831 940 aaPredicted RBP18.2■□□□□ 0.5
NUP54-217ENST00000514987 SKOR2Q2VWA4 1001 aaPredicted RBP18.2■□□□□ 0.5
NUP54-217ENST00000514987 RBM42Q9BTD8 480 aaKnown RBP18.2■□□□□ 0.5
NUP54-217ENST00000514987 CD2BP2O95400 341 aaKnown RBP18.19■□□□□ 0.5
NUP54-217ENST00000514987 TNPO1Q92973 898 aaKnown RBP18.19■□□□□ 0.5
NUP54-217ENST00000514987 CWC22Q9HCG8 908 aaKnown RBP18.19■□□□□ 0.5
NUP54-217ENST00000514987 HYPKQ9NX55 129 aa18.19■□□□□ 0.5
NUP54-217ENST00000514987 PXDNQ92626 1479 aa18.19■□□□□ 0.5
NUP54-217ENST00000514987 PI4KAP2A4QPH2 592 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms