RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 SMC2O95347 1197 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 ATP2B1P20020 1258 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 TNNI2P48788 182 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 MVPQ14764 893 aaKnown RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 CCDC96Q2M329 555 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 CWC25Q9NXE8 425 aaPredicted RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 CEP131Q9UPN4 1083 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 STK38Q15208 465 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 TPTE2Q6XPS3 522 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 IQCA1Q86XH1 822 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 HOOK2Q96ED9 719 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 KIF1BPQ96EK5 621 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 GZF1Q9H116 711 aaPredicted RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 ZHX3Q9H4I2 956 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 IFT57Q9NWB7 429 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 LETM1O95202 739 aaPredicted RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 IL2RBP14784 551 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 EXOC6Q8TAG9 804 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 RAB34Q9BZG1 259 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 C14orf93Q9H972 538 aaKnown RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 NSD3Q9BZ95 1437 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 NCKAP5LQ9HCH0 1330 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ATP6V1AP38606 617 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 TBX22Q9Y458 520 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ZNF518AQ6AHZ1 1483 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 PLCH2O75038 1416 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 PDE6BP35913 854 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 FOSBP53539 338 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ANKRD18AQ8IVF6 992 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 MYCNP04198 464 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 ZSCAN31Q96LW9 406 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 NOB1Q9ULX3 412 aaKnown RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 PPP1R12BO60237 982 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 HSPA2P54652 639 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 FLAD1Q8NFF5 587 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 A2MP01023 1474 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ACEP12821 1306 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 BAG4O95429 457 aaKnown RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 NME9Q86XW9 330 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 SUPT20HQ8NEM7 779 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 CTCFLQ8NI51 663 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 CCDC12Q8WUD4 166 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 DRC1Q96MC2 740 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 NAPBQ9H115 298 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ZNHIT6Q9NWK9 470 aaKnown RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 NAIPQ13075 1403 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 KINO60870 393 aaKnown RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 CHRNA2Q15822 529 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 U3KPZ7 1027 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 CAMSAP2Q08AD1 1489 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ARAP1Q96P48 1450 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 HSP90AA2PQ14568 343 aaPredicted RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 BLOC1S2Q6QNY1 142 aa5.01□□□□□ -1.61
VCAN-209ENST00000513016 ZC3H12CQ9C0D7 883 aaKnown RBP5.01□□□□□ -1.61
VCAN-209ENST00000513016 WDR7Q9Y4E6 1490 aa5□□□□□ -1.61
VCAN-209ENST00000513016 CDK13Q14004 1512 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 GLRX3O76003 335 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 KIF20AO95235 890 aa5□□□□□ -1.61
VCAN-209ENST00000513016 KCNA6P17658 529 aa5□□□□□ -1.61
VCAN-209ENST00000513016 TMPOP42166 694 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 TNNT3P45378 269 aaPredicted RBP5□□□□□ -1.61
VCAN-209ENST00000513016 CCAR2Q8N163 923 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 PHAXQ9H814 394 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 RIMS2Q9UQ26 1411 aa5□□□□□ -1.61
VCAN-209ENST00000513016 CCDC150Q8NCX0 1101 aa5□□□□□ -1.61
VCAN-209ENST00000513016 DNAAF4Q8WXU2 420 aa5□□□□□ -1.61
VCAN-209ENST00000513016 CCDC87Q9NVE4 849 aa5□□□□□ -1.61
VCAN-209ENST00000513016 URB2Q14146 1524 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 ARHGEF6Q15052 776 aa5□□□□□ -1.61
VCAN-209ENST00000513016 LDHAL6AQ6ZMR3 332 aa5□□□□□ -1.61
VCAN-209ENST00000513016 ZNF804AQ7Z570 1209 aa5□□□□□ -1.61
VCAN-209ENST00000513016 CCDC85AQ96PX6 553 aaPredicted RBP5□□□□□ -1.61
VCAN-209ENST00000513016 ACBD3Q9H3P7 528 aa5□□□□□ -1.61
VCAN-209ENST00000513016 CETN2P41208 172 aa5□□□□□ -1.61
VCAN-209ENST00000513016 PDE4BQ07343 736 aa5□□□□□ -1.61
VCAN-209ENST00000513016 RABEP1Q15276 862 aa5□□□□□ -1.61
VCAN-209ENST00000513016 FOXD4L6Q3SYB3 417 aaPredicted RBP5□□□□□ -1.61
VCAN-209ENST00000513016 FOXD4L3Q6VB84 417 aaPredicted RBP5□□□□□ -1.61
VCAN-209ENST00000513016 RBM17Q96I25 401 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 IPO9Q96P70 1041 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 LRRFIP2Q9Y608 721 aaKnown RBP5□□□□□ -1.61
VCAN-209ENST00000513016 KDM5BQ9UGL1 1544 aa5□□□□□ -1.61
VCAN-209ENST00000513016 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 SSBP05455 408 aaKnown RBP eCLIP4.99□□□□□ -1.61
VCAN-209ENST00000513016 EIF6P56537 245 aaKnown RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 TMEM266Q2M3C6 531 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 TRAPPC3LQ5T215 181 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 ZNF772Q68DY9 489 aaPredicted RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 USHBP1Q8N6Y0 703 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 VTI1AQ96AJ9 217 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 CRNKL1Q9BZJ0 848 aaKnown RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 MINDY4BA8MYZ0 360 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 IBSPP21815 317 aaPredicted RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 GPTP24298 496 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 CHMP4BP1P59074 171 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 PANK1Q8TE04 598 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 ABCC10Q5T3U5 1492 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 PLCG2P16885 1265 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 HOMER1Q86YM7 354 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 C22orf23Q9BZE7 217 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms