RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 ZBTB24O43167 697 aaPredicted RBP6.74□□□□□ -1.33
USP53-204ENST00000507906 SIAH2O43255 324 aa6.74□□□□□ -1.33
USP53-204ENST00000507906 MYCP01106 439 aaPredicted RBP6.74□□□□□ -1.33
USP53-204ENST00000507906 WNT7BP56706 349 aa6.74□□□□□ -1.33
USP53-204ENST00000507906 ZNF787Q6DD87 383 aa6.74□□□□□ -1.33
USP53-204ENST00000507906 ETNK1Q9HBU6 452 aa6.74□□□□□ -1.33
USP53-204ENST00000507906 IGSF5Q9NSI5 407 aa6.74□□□□□ -1.33
USP53-204ENST00000507906 TLL2Q9Y6L7 1015 aa6.74□□□□□ -1.33
USP53-204ENST00000507906 IGSF3O75054 1194 aa6.73□□□□□ -1.33
USP53-204ENST00000507906 CC2D2BQ6DHV5 1058 aa6.73□□□□□ -1.33
USP53-204ENST00000507906 ZNF784Q8NCA9 323 aaPredicted RBP6.73□□□□□ -1.33
USP53-204ENST00000507906 SCG3Q8WXD2 468 aaKnown RBP6.73□□□□□ -1.33
USP53-204ENST00000507906 SAP130Q9H0E3 1048 aa6.73□□□□□ -1.33
USP53-204ENST00000507906 TSPAN10Q9H1Z9 355 aaPredicted RBP6.73□□□□□ -1.33
USP53-204ENST00000507906 SERTAD1Q9UHV2 236 aa6.73□□□□□ -1.33
USP53-204ENST00000507906 A0A1W2PRU2 124 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 NR3C2P08235 984 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 FSHRP23945 695 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 GDF10P55107 478 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 FKBP4Q02790 459 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP53-204ENST00000507906 TBCELQ5QJ74 424 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 ZNF697Q5TEC3 545 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 CCDC125Q86Z20 511 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 EHBP1Q8NDI1 1231 aa6.72□□□□□ -1.33
USP53-204ENST00000507906 INHAP05111 366 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 IGFBP4P22692 258 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 RPIAP49247 311 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 PKDCCQ504Y2 493 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 SPRYD7Q5W111 196 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 GLYCTKQ8IVS8 523 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 GIPC2Q8TF65 315 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 BCL2L13Q9BXK5 485 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 USP3Q9Y6I4 520 aa6.71□□□□□ -1.34
USP53-204ENST00000507906 ATAD2Q6PL18 1390 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 FAM187AA6NFU0 413 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 POTECB2RU33 542 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 FOXK2Q01167 660 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 FOXC1Q12948 553 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 FAM26DQ5JW98 314 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 PPP1R26Q5T8A7 1209 aaPredicted RBP6.7□□□□□ -1.34
USP53-204ENST00000507906 FBXO33Q7Z6M2 555 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 KDF1Q8NAX2 398 aaPredicted RBP6.7□□□□□ -1.34
USP53-204ENST00000507906 MRRFQ96E11 262 aaKnown RBP6.7□□□□□ -1.34
USP53-204ENST00000507906 SLC4A9Q96Q91 983 aa6.7□□□□□ -1.34
USP53-204ENST00000507906 LOC105371045A0A1W2PR82 267 aa6.69□□□□□ -1.34
USP53-204ENST00000507906 WASLO00401 505 aaPredicted RBP6.69□□□□□ -1.34
USP53-204ENST00000507906 ERCC3P19447 782 aa6.69□□□□□ -1.34
USP53-204ENST00000507906 CHMP7Q8WUX9 453 aaPredicted RBP6.69□□□□□ -1.34
USP53-204ENST00000507906 RAB6BQ9NRW1 208 aa6.69□□□□□ -1.34
USP53-204ENST00000507906 ST8SIA5O15466 376 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 PTCD1O75127 700 aaKnown RBP6.68□□□□□ -1.34
USP53-204ENST00000507906 NPR3P17342 541 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 MAPK1P28482 360 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 MYT1Q01538 1121 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 ZNF598Q86UK7 904 aaKnown RBP6.68□□□□□ -1.34
USP53-204ENST00000507906 MPNDQ8N594 471 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 HELQQ8TDG4 1101 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 COL26A1Q96A83 441 aa6.68□□□□□ -1.34
USP53-204ENST00000507906 SCHIP1Q9P0W5 487 aaPredicted RBP6.68□□□□□ -1.34
USP53-204ENST00000507906 TNFRSF10BO14763 440 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 CD2BP2O95400 341 aaKnown RBP6.67□□□□□ -1.34
USP53-204ENST00000507906 ADH1CP00326 375 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 IL2RAP01589 272 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 MPSTP25325 297 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 SF3B2Q13435 895 aaKnown RBP6.67□□□□□ -1.34
USP53-204ENST00000507906 ZNF775Q96BV0 537 aaPredicted RBP6.67□□□□□ -1.34
USP53-204ENST00000507906 MRGPRX2Q96LB1 330 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 ASB16Q96NS5 453 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 DCTN4Q9UJW0 460 aa6.67□□□□□ -1.34
USP53-204ENST00000507906 ZBTB39O15060 712 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 FOXO3O43524 673 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 COX20Q5RI15 118 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 SLC9A9Q8IVB4 645 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 CCDC116Q8IYX3 515 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 XAGE2Q96GT9 111 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 C2orf49Q9BVC5 232 aaPredicted RBP6.66□□□□□ -1.34
USP53-204ENST00000507906 ARHGEF10LQ9HCE6 1279 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 IQSEC3Q9UPP2 1182 aaPredicted RBP6.66□□□□□ -1.34
USP53-204ENST00000507906 HRH3Q9Y5N1 445 aa6.66□□□□□ -1.34
USP53-204ENST00000507906 A6NJY4 79 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 BACH1O14867 736 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 PPP1R12BO60237 982 aaPredicted RBP6.65□□□□□ -1.34
USP53-204ENST00000507906 GNRH1P01148 92 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 SMTNP53814 917 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 DHX9Q08211 1270 aaKnown RBP6.65□□□□□ -1.34
USP53-204ENST00000507906 CBLBQ13191 982 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 MTFR1Q15390 333 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 SH3PXD2AQ5TCZ1 1133 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 ZNF295-AS1Q8N0V1 137 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 ESF1Q9H501 851 aaKnown RBP6.65□□□□□ -1.34
USP53-204ENST00000507906 QTRT2Q9H974 415 aaKnown RBP6.65□□□□□ -1.34
USP53-204ENST00000507906 CCDC87Q9NVE4 849 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 LRFN2Q9ULH4 789 aa6.65□□□□□ -1.34
USP53-204ENST00000507906 WNT7AO00755 349 aa6.64□□□□□ -1.35
USP53-204ENST00000507906 GDF9O60383 454 aa6.64□□□□□ -1.35
USP53-204ENST00000507906 NR5A1Q13285 461 aa6.64□□□□□ -1.35
USP53-204ENST00000507906 TMC7Q7Z402 723 aa6.64□□□□□ -1.35
USP53-204ENST00000507906 FZD6O60353 706 aa6.63□□□□□ -1.35
USP53-204ENST00000507906 IGHA2P01877 340 aa6.63□□□□□ -1.35
USP53-204ENST00000507906 P4HBP07237 508 aaKnown RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms