RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 AKAP4Q5JQC9 854 aa15.8■□□□□ 0.12
PDLIM5-208ENST00000504489 CCER2I3L3R5 266 aa15.79■□□□□ 0.12
PDLIM5-208ENST00000504489 DCAF5Q96JK2 942 aa15.79■□□□□ 0.12
PDLIM5-208ENST00000504489 BCL11BQ9C0K0 894 aaPredicted RBP15.79■□□□□ 0.12
PDLIM5-208ENST00000504489 LY75O60449 1722 aa15.79■□□□□ 0.12
PDLIM5-208ENST00000504489 ACSBG1Q96GR2 724 aa15.78■□□□□ 0.12
PDLIM5-208ENST00000504489 KDM6AO15550 1401 aaPredicted RBP15.77■□□□□ 0.12
PDLIM5-208ENST00000504489 MAPK8IP3Q9UPT6 1336 aa15.77■□□□□ 0.12
PDLIM5-208ENST00000504489 KCNQ2O43526 872 aa15.77■□□□□ 0.12
PDLIM5-208ENST00000504489 PRIM1P49642 420 aaKnown RBP15.77■□□□□ 0.12
PDLIM5-208ENST00000504489 RUNDC1Q96C34 613 aa15.77■□□□□ 0.12
PDLIM5-208ENST00000504489 MAP3K5Q99683 1374 aa15.76■□□□□ 0.11
PDLIM5-208ENST00000504489 GNAT3A8MTJ3 354 aa15.76■□□□□ 0.11
PDLIM5-208ENST00000504489 ERVV-2B6SEH9 535 aa15.76■□□□□ 0.11
PDLIM5-208ENST00000504489 SF3B2Q13435 895 aaKnown RBP15.76■□□□□ 0.11
PDLIM5-208ENST00000504489 RREB1Q92766 1687 aa15.76■□□□□ 0.11
PDLIM5-208ENST00000504489 NFE2L2Q16236 605 aa15.75■□□□□ 0.11
PDLIM5-208ENST00000504489 MPRIPQ6WCQ1 1025 aa15.75■□□□□ 0.11
PDLIM5-208ENST00000504489 PTF1AQ7RTS3 328 aa15.75■□□□□ 0.11
PDLIM5-208ENST00000504489 MIER1Q8N108 512 aa15.75■□□□□ 0.11
PDLIM5-208ENST00000504489 TAF1LQ8IZX4 1826 aa15.75■□□□□ 0.11
PDLIM5-208ENST00000504489 MRC1P22897 1456 aa15.74■□□□□ 0.11
PDLIM5-208ENST00000504489 RNMTO43148 476 aaKnown RBP15.74■□□□□ 0.11
PDLIM5-208ENST00000504489 HTATSF1O43719 755 aaKnown RBP15.74■□□□□ 0.11
PDLIM5-208ENST00000504489 CCDC146Q8IYE0 955 aa15.74■□□□□ 0.11
PDLIM5-208ENST00000504489 APBA3O96018 575 aa15.73■□□□□ 0.11
PDLIM5-208ENST00000504489 BAG6P46379 1132 aa15.73■□□□□ 0.11
PDLIM5-208ENST00000504489 SYTL4Q96C24 671 aaPredicted RBP15.73■□□□□ 0.11
PDLIM5-208ENST00000504489 LGR6Q9HBX8 967 aa15.73■□□□□ 0.11
PDLIM5-208ENST00000504489 PAPPAQ13219 1627 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 PLSCR1O15162 318 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 TMPOP42166 694 aaKnown RBP15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 IL17REQ8NFR9 667 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 TMOD3Q9NYL9 352 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 SSUH2Q9Y2M2 353 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 CEMIPQ8WUJ3 1361 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 UBR2Q8IWV8 1755 aa15.72■□□□□ 0.11
PDLIM5-208ENST00000504489 NUP188Q5SRE5 1749 aa15.71■□□□□ 0.11
PDLIM5-208ENST00000504489 ZNF831Q5JPB2 1677 aa15.71■□□□□ 0.11
PDLIM5-208ENST00000504489 PITPNM1O00562 1244 aa15.71■□□□□ 0.11
PDLIM5-208ENST00000504489 CABP4P57796 275 aa15.71■□□□□ 0.11
PDLIM5-208ENST00000504489 PIGBQ92521 554 aa15.71■□□□□ 0.11
PDLIM5-208ENST00000504489 DEFB132Q7Z7B7 95 aa15.7■□□□□ 0.1
PDLIM5-208ENST00000504489 RTF1Q92541 710 aaKnown RBP15.7■□□□□ 0.1
PDLIM5-208ENST00000504489 SLC52A2Q9HAB3 445 aa15.7■□□□□ 0.1
PDLIM5-208ENST00000504489 RIPK4P57078 832 aa15.69■□□□□ 0.1
PDLIM5-208ENST00000504489 FAM9BQ8IZU0 186 aa15.69■□□□□ 0.1
PDLIM5-208ENST00000504489 NFATC2IPQ8NCF5 419 aa15.69■□□□□ 0.1
PDLIM5-208ENST00000504489 CAMKK2Q96RR4 588 aa15.69■□□□□ 0.1
PDLIM5-208ENST00000504489 KDM3BQ7LBC6 1761 aa15.69■□□□□ 0.1
PDLIM5-208ENST00000504489 APAF1O14727 1248 aa15.68■□□□□ 0.1
PDLIM5-208ENST00000504489 EN1Q05925 392 aaPredicted RBP15.68■□□□□ 0.1
PDLIM5-208ENST00000504489 LMOD3Q0VAK6 560 aa15.68■□□□□ 0.1
PDLIM5-208ENST00000504489 C5P01031 1676 aa15.67■□□□□ 0.1
PDLIM5-208ENST00000504489 TEFQ10587 303 aa15.67■□□□□ 0.1
PDLIM5-208ENST00000504489 MCM10Q7L590 875 aa15.67■□□□□ 0.1
PDLIM5-208ENST00000504489 SMARCC1Q92922 1105 aaPredicted RBP15.67■□□□□ 0.1
PDLIM5-208ENST00000504489 CICQ96RK0 1608 aaPredicted RBP15.66■□□□□ 0.1
PDLIM5-208ENST00000504489 DCTN1Q14203 1278 aa15.66■□□□□ 0.1
PDLIM5-208ENST00000504489 EZH2Q15910 746 aaKnown RBP15.66■□□□□ 0.1
PDLIM5-208ENST00000504489 ATG3Q9NT62 314 aa15.66■□□□□ 0.1
PDLIM5-208ENST00000504489 ASAP1Q9ULH1 1129 aa15.66■□□□□ 0.1
PDLIM5-208ENST00000504489 RRP7AQ9Y3A4 280 aaKnown RBP15.66■□□□□ 0.1
PDLIM5-208ENST00000504489 COL5A3P25940 1745 aaPredicted RBP15.65■□□□□ 0.1
PDLIM5-208ENST00000504489 NEUROD2Q15784 382 aa15.65■□□□□ 0.1
PDLIM5-208ENST00000504489 PROM2Q8N271 834 aa15.65■□□□□ 0.1
PDLIM5-208ENST00000504489 TRIM35Q9UPQ4 493 aa15.65■□□□□ 0.1
PDLIM5-208ENST00000504489 PALLDQ8WX93 1383 aa15.64■□□□□ 0.09
PDLIM5-208ENST00000504489 TXNRD1Q16881 649 aa15.64■□□□□ 0.09
PDLIM5-208ENST00000504489 MYH14Q7Z406 1995 aaKnown RBP15.64■□□□□ 0.09
PDLIM5-208ENST00000504489 TJP1Q07157 1748 aa15.63■□□□□ 0.09
PDLIM5-208ENST00000504489 QSER1Q2KHR3 1735 aa15.63■□□□□ 0.09
PDLIM5-208ENST00000504489 TAF7Q15545 349 aaPredicted RBP15.63■□□□□ 0.09
PDLIM5-208ENST00000504489 SLC27A3Q5K4L6 730 aa15.63■□□□□ 0.09
PDLIM5-208ENST00000504489 TUBGCP6Q96RT7 1819 aa15.63■□□□□ 0.09
PDLIM5-208ENST00000504489 CCDC27Q2M243 656 aa15.62■□□□□ 0.09
PDLIM5-208ENST00000504489 NGEFQ8N5V2 710 aa15.62■□□□□ 0.09
PDLIM5-208ENST00000504489 SPDYE1Q8NFV5 336 aaPredicted RBP15.62■□□□□ 0.09
PDLIM5-208ENST00000504489 THUMPD2Q9BTF0 503 aaKnown RBP15.62■□□□□ 0.09
PDLIM5-208ENST00000504489 KCPQ6ZWJ8 1503 aa15.62■□□□□ 0.09
PDLIM5-208ENST00000504489 BTBD11A6QL63 1104 aa15.61■□□□□ 0.09
PDLIM5-208ENST00000504489 UBR3Q6ZT12 1888 aa15.61■□□□□ 0.09
PDLIM5-208ENST00000504489 LOC102724428A0A0B4J2F2 783 aa15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 HMGB2P26583 209 aaKnown RBP15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 SIK1P57059 783 aa15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 SLC39A6Q13433 755 aa15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 ZNF790Q6PG37 636 aa15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 LRRC4BQ9NT99 713 aa15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 C4BP0C0L5 1744 aa15.6■□□□□ 0.09
PDLIM5-208ENST00000504489 BABAM1Q9NWV8 329 aa15.59■□□□□ 0.09
PDLIM5-208ENST00000504489 CCNL1Q9UK58 526 aaPredicted RBP15.59■□□□□ 0.09
PDLIM5-208ENST00000504489 LAMB4A4D0S4 1761 aa15.59■□□□□ 0.09
PDLIM5-208ENST00000504489 CALD1Q05682 793 aaKnown RBP15.58■□□□□ 0.08
PDLIM5-208ENST00000504489 TTC5Q8N0Z6 440 aa15.58■□□□□ 0.08
PDLIM5-208ENST00000504489 CLEC11AQ9Y240 323 aa15.58■□□□□ 0.08
PDLIM5-208ENST00000504489 PTCD1O75127 700 aaKnown RBP15.57■□□□□ 0.08
PDLIM5-208ENST00000504489 WWC1Q8IX03 1113 aa15.57■□□□□ 0.08
PDLIM5-208ENST00000504489 PIP4P2Q8N4L2 257 aa15.57■□□□□ 0.08
PDLIM5-208ENST00000504489 SLC4A9Q96Q91 983 aa15.57■□□□□ 0.08
PDLIM5-208ENST00000504489 CACNA1FO60840 1977 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 1079.7 ms