RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 ABTB2Q8N961 1025 aa20.22■□□□□ 0.83
COL6A1-206ENST00000498614 SLAIN2Q9P270 581 aa20.22■□□□□ 0.83
COL6A1-206ENST00000498614 ATP10DQ9P241 1426 aa20.22■□□□□ 0.83
COL6A1-206ENST00000498614 CDC45O75419 566 aa20.21■□□□□ 0.83
COL6A1-206ENST00000498614 EYA1Q99502 592 aa20.21■□□□□ 0.83
COL6A1-206ENST00000498614 TSPYL4Q9UJ04 414 aa20.21■□□□□ 0.83
COL6A1-206ENST00000498614 PIK3C2AO00443 1686 aa20.21■□□□□ 0.83
COL6A1-206ENST00000498614 GSPT1P15170 499 aaKnown RBP20.21■□□□□ 0.83
COL6A1-206ENST00000498614 ANKRD44Q8N8A2 993 aa20.21■□□□□ 0.83
COL6A1-206ENST00000498614 PTPRCP08575 1304 aa20.2■□□□□ 0.82
COL6A1-206ENST00000498614 PLEKHM2Q8IWE5 1019 aa20.2■□□□□ 0.82
COL6A1-206ENST00000498614 MEIS3Q99687 375 aa20.2■□□□□ 0.82
COL6A1-206ENST00000498614 BAG4O95429 457 aaKnown RBP20.2■□□□□ 0.82
COL6A1-206ENST00000498614 NLRP6P59044 892 aa20.2■□□□□ 0.82
COL6A1-206ENST00000498614 CEP85Q6P2H3 762 aa20.2■□□□□ 0.82
COL6A1-206ENST00000498614 C16orf71Q8IYS4 520 aaPredicted RBP20.2■□□□□ 0.82
COL6A1-206ENST00000498614 CLEC17AQ6ZS10 378 aa20.19■□□□□ 0.82
COL6A1-206ENST00000498614 RTL1A6NKG5 1358 aa20.19■□□□□ 0.82
COL6A1-206ENST00000498614 HSP90AA2PQ14568 343 aaPredicted RBP20.19■□□□□ 0.82
COL6A1-206ENST00000498614 KRT28Q7Z3Y7 464 aa20.19■□□□□ 0.82
COL6A1-206ENST00000498614 DCCP43146 1447 aa20.18■□□□□ 0.82
COL6A1-206ENST00000498614 KDRP35968 1356 aa20.18■□□□□ 0.82
COL6A1-206ENST00000498614 APBB1O00213 710 aa20.18■□□□□ 0.82
COL6A1-206ENST00000498614 BRINP3Q76B58 766 aa20.18■□□□□ 0.82
COL6A1-206ENST00000498614 G2E3Q7L622 706 aa20.18■□□□□ 0.82
COL6A1-206ENST00000498614 IGSF1Q8N6C5 1336 aa20.18■□□□□ 0.82
COL6A1-206ENST00000498614 GOLGA6L22H0YM25 854 aa20.17■□□□□ 0.82
COL6A1-206ENST00000498614 RPAP2Q8IXW5 612 aaPredicted RBP20.17■□□□□ 0.82
COL6A1-206ENST00000498614 DDX49Q9Y6V7 483 aaKnown RBP20.17■□□□□ 0.82
COL6A1-206ENST00000498614 NASPP49321 788 aaPredicted RBP20.17■□□□□ 0.82
COL6A1-206ENST00000498614 KLHL40Q2TBA0 621 aa20.17■□□□□ 0.82
COL6A1-206ENST00000498614 F6X3S4 739 aa20.16■□□□□ 0.82
COL6A1-206ENST00000498614 RRP9O43818 475 aaKnown RBP20.16■□□□□ 0.82
COL6A1-206ENST00000498614 CCDC173Q0VFZ6 552 aa20.16■□□□□ 0.82
COL6A1-206ENST00000498614 SLC4A10Q6U841 1118 aa20.16■□□□□ 0.82
COL6A1-206ENST00000498614 OTUD7AQ8TE49 926 aaPredicted RBP20.16■□□□□ 0.82
COL6A1-206ENST00000498614 PPP1R9BQ96SB3 815 aa20.16■□□□□ 0.82
COL6A1-206ENST00000498614 SMARCA5O60264 1052 aaPredicted RBP20.16■□□□□ 0.82
COL6A1-206ENST00000498614 LTBP4Q8N2S1 1624 aa20.16■□□□□ 0.82
COL6A1-206ENST00000498614 TTC22Q5TAA0 569 aa20.15■□□□□ 0.82
COL6A1-206ENST00000498614 RABEP1Q15276 862 aa20.14■□□□□ 0.81
COL6A1-206ENST00000498614 IBTKQ9P2D0 1353 aaPredicted RBP20.13■□□□□ 0.81
COL6A1-206ENST00000498614 HOXC9P31274 260 aa20.13■□□□□ 0.81
COL6A1-206ENST00000498614 LTV1Q96GA3 475 aaPredicted RBP20.13■□□□□ 0.81
COL6A1-206ENST00000498614 MCTP1Q6DN14 999 aa20.12■□□□□ 0.81
COL6A1-206ENST00000498614 GLIPR1L2Q4G1C9 344 aa20.12■□□□□ 0.81
COL6A1-206ENST00000498614 NECTIN2Q92692 538 aa20.11■□□□□ 0.81
COL6A1-206ENST00000498614 USP26Q9BXU7 913 aa20.11■□□□□ 0.81
COL6A1-206ENST00000498614 MARF1Q9Y4F3 1742 aaKnown RBP20.11■□□□□ 0.81
COL6A1-206ENST00000498614 AK9Q5TCS8 1911 aa20.11■□□□□ 0.81
COL6A1-206ENST00000498614 PKP1Q13835 747 aa20.1■□□□□ 0.81
COL6A1-206ENST00000498614 GNAT3A8MTJ3 354 aa20.09■□□□□ 0.81
COL6A1-206ENST00000498614 CYP2E1P05181 493 aaPredicted RBP20.09■□□□□ 0.81
COL6A1-206ENST00000498614 STK31Q9BXU1 1019 aa20.09■□□□□ 0.81
COL6A1-206ENST00000498614 ZBTB7CA1YPR0 619 aa20.09■□□□□ 0.81
COL6A1-206ENST00000498614 ZNF445P59923 1031 aa20.09■□□□□ 0.81
COL6A1-206ENST00000498614 ZSCAN30Q86W11 494 aa20.09■□□□□ 0.81
COL6A1-206ENST00000498614 NPHP3Q7Z494 1330 aa20.08■□□□□ 0.81
COL6A1-206ENST00000498614 NCLP19338 710 aaKnown RBP20.08■□□□□ 0.81
COL6A1-206ENST00000498614 CCT4P50991 539 aaKnown RBP20.08■□□□□ 0.81
COL6A1-206ENST00000498614 NUCB2P80303 420 aa20.08■□□□□ 0.81
COL6A1-206ENST00000498614 CAVIN1Q6NZI2 390 aaKnown RBP20.08■□□□□ 0.81
COL6A1-206ENST00000498614 LMBRD1Q9NUN5 540 aa20.08■□□□□ 0.81
COL6A1-206ENST00000498614 LRRC37A3O60309 1634 aa20.08■□□□□ 0.8
COL6A1-206ENST00000498614 TPM2P07951 284 aa20.08■□□□□ 0.8
COL6A1-206ENST00000498614 CABLES1Q8TDN4 633 aa20.08■□□□□ 0.8
COL6A1-206ENST00000498614 ANP32BQ92688 251 aaKnown RBP20.08■□□□□ 0.8
COL6A1-206ENST00000498614 SDSP20132 328 aa20.07■□□□□ 0.8
COL6A1-206ENST00000498614 PIP4K2BP78356 416 aa20.07■□□□□ 0.8
COL6A1-206ENST00000498614 ZSCAN23Q3MJ62 389 aa20.07■□□□□ 0.8
COL6A1-206ENST00000498614 USHBP1Q8N6Y0 703 aa20.07■□□□□ 0.8
COL6A1-206ENST00000498614 HTATSF1O43719 755 aaKnown RBP20.07■□□□□ 0.8
COL6A1-206ENST00000498614 HMMRO75330 724 aa20.07■□□□□ 0.8
COL6A1-206ENST00000498614 KIAA1211Q6ZU35 1233 aa20.06■□□□□ 0.8
COL6A1-206ENST00000498614 FLIIQ13045 1269 aa20.06■□□□□ 0.8
COL6A1-206ENST00000498614 FKBP5Q13451 457 aaPredicted RBP20.06■□□□□ 0.8
COL6A1-206ENST00000498614 IL17REQ8NFR9 667 aa20.06■□□□□ 0.8
COL6A1-206ENST00000498614 FAM208AQ9UK61 1670 aaKnown RBP20.06■□□□□ 0.8
COL6A1-206ENST00000498614 MAP3K5Q99683 1374 aa20.05■□□□□ 0.8
COL6A1-206ENST00000498614 CCDC30Q5VVM6 783 aa20.05■□□□□ 0.8
COL6A1-206ENST00000498614 VSIG10Q8N0Z9 540 aa20.05■□□□□ 0.8
COL6A1-206ENST00000498614 ZGPATQ8N5A5 531 aaKnown RBP20.05■□□□□ 0.8
COL6A1-206ENST00000498614 KIF1AQ12756 1690 aa20.04■□□□□ 0.8
COL6A1-206ENST00000498614 RBSNQ9H1K0 784 aa20.04■□□□□ 0.8
COL6A1-206ENST00000498614 GNAI2P04899 355 aa20.03■□□□□ 0.8
COL6A1-206ENST00000498614 EXOC6BQ9Y2D4 811 aa20.03■□□□□ 0.8
COL6A1-206ENST00000498614 OFD1O75665 1012 aa20.02■□□□□ 0.8
COL6A1-206ENST00000498614 USP54Q70EL1 1684 aa20.02■□□□□ 0.8
COL6A1-206ENST00000498614 MSNP26038 577 aaKnown RBP20.02■□□□□ 0.8
COL6A1-206ENST00000498614 ZDHHC9Q9Y397 364 aa20.02■□□□□ 0.8
COL6A1-206ENST00000498614 PRPF40AO75400 957 aaKnown RBP20.01■□□□□ 0.79
COL6A1-206ENST00000498614 GCP02774 474 aa20.01■□□□□ 0.79
COL6A1-206ENST00000498614 GPT2Q8TD30 523 aa20.01■□□□□ 0.79
COL6A1-206ENST00000498614 CWC22Q9HCG8 908 aaKnown RBP20.01■□□□□ 0.79
COL6A1-206ENST00000498614 RBM27Q9P2N5 1060 aaKnown RBP20.01■□□□□ 0.79
COL6A1-206ENST00000498614 TRPM3Q9HCF6 1732 aaPredicted RBP20.01■□□□□ 0.79
COL6A1-206ENST00000498614 PXDNQ92626 1479 aa20.01■□□□□ 0.79
COL6A1-206ENST00000498614 TAF7Q15545 349 aaPredicted RBP20.01■□□□□ 0.79
COL6A1-206ENST00000498614 CASC1Q6TDU7 716 aa20.01■□□□□ 0.79
COL6A1-206ENST00000498614 CHAMP1Q96JM3 812 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms