RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-218ENST00000496197 ERVV-2B6SEH9 535 aa17.71■□□□□ 0.43
PTPN7-218ENST00000496197 LMOD3Q0VAK6 560 aa17.71■□□□□ 0.43
PTPN7-218ENST00000496197 NCBP3Q53F19 620 aaKnown RBP17.71■□□□□ 0.43
PTPN7-218ENST00000496197 PIGBQ92521 554 aa17.71■□□□□ 0.43
PTPN7-218ENST00000496197 YTHDC1Q96MU7 727 aaKnown RBP17.71■□□□□ 0.43
PTPN7-218ENST00000496197 SPINK5Q9NQ38 1064 aaPredicted RBP17.71■□□□□ 0.43
PTPN7-218ENST00000496197 LY75O60449 1722 aa17.71■□□□□ 0.43
PTPN7-218ENST00000496197 TRIM37O94972 964 aa17.7■□□□□ 0.42
PTPN7-218ENST00000496197 CABP4P57796 275 aa17.7■□□□□ 0.42
PTPN7-218ENST00000496197 MIS18AQ9NYP9 233 aa17.69■□□□□ 0.42
PTPN7-218ENST00000496197 TEFQ10587 303 aa17.69■□□□□ 0.42
PTPN7-218ENST00000496197 TMOD3Q9NYL9 352 aa17.69■□□□□ 0.42
PTPN7-218ENST00000496197 KCPQ6ZWJ8 1503 aa17.68■□□□□ 0.42
PTPN7-218ENST00000496197 C5P01031 1676 aa17.68■□□□□ 0.42
PTPN7-218ENST00000496197 KCNQ3O43525 872 aa17.68■□□□□ 0.42
PTPN7-218ENST00000496197 SLC39A6Q13433 755 aa17.68■□□□□ 0.42
PTPN7-218ENST00000496197 ASAP1Q9ULH1 1129 aa17.68■□□□□ 0.42
PTPN7-218ENST00000496197 BCL11BQ9C0K0 894 aaPredicted RBP17.67■□□□□ 0.42
PTPN7-218ENST00000496197 ZNF853P0CG23 659 aa17.66■□□□□ 0.42
PTPN7-218ENST00000496197 TAF7Q15545 349 aaPredicted RBP17.66■□□□□ 0.42
PTPN7-218ENST00000496197 NGEFQ8N5V2 710 aa17.66■□□□□ 0.42
PTPN7-218ENST00000496197 CDCA7LQ96GN5 454 aa17.66■□□□□ 0.42
PTPN7-218ENST00000496197 ATG3Q9NT62 314 aa17.66■□□□□ 0.42
PTPN7-218ENST00000496197 LAS1LQ9Y4W2 734 aaKnown RBP17.66■□□□□ 0.42
PTPN7-218ENST00000496197 TJP1Q07157 1748 aa17.66■□□□□ 0.42
PTPN7-218ENST00000496197 ZBED9Q6R2W3 1325 aa17.66■□□□□ 0.42
PTPN7-218ENST00000496197 RGPD3A6NKT7 1758 aaPredicted RBP17.65■□□□□ 0.42
PTPN7-218ENST00000496197 RGPD4Q7Z3J3 1758 aa17.65■□□□□ 0.42
PTPN7-218ENST00000496197 WDR63Q8IWG1 891 aa17.65■□□□□ 0.42
PTPN7-218ENST00000496197 TAF1LQ8IZX4 1826 aa17.65■□□□□ 0.42
PTPN7-218ENST00000496197 BTBD11A6QL63 1104 aa17.64■□□□□ 0.41
PTPN7-218ENST00000496197 CHL1O00533 1208 aa17.63■□□□□ 0.41
PTPN7-218ENST00000496197 TSR2Q969E8 191 aaKnown RBP17.63■□□□□ 0.41
PTPN7-218ENST00000496197 CFAP44Q96MT7 982 aa17.63■□□□□ 0.41
PTPN7-218ENST00000496197 MBIPQ9NS73 344 aa17.63■□□□□ 0.41
PTPN7-218ENST00000496197 CICQ96RK0 1608 aaPredicted RBP17.63■□□□□ 0.41
PTPN7-218ENST00000496197 IL16Q14005 1332 aa17.63■□□□□ 0.41
PTPN7-218ENST00000496197 IFT57Q9NWB7 429 aa17.63■□□□□ 0.41
PTPN7-218ENST00000496197 COL5A3P25940 1745 aaPredicted RBP17.62■□□□□ 0.41
PTPN7-218ENST00000496197 ZNF831Q5JPB2 1677 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 RREB1Q92766 1687 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 PALLDQ8WX93 1383 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 ZNF790Q6PG37 636 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 SLC4A9Q96Q91 983 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 TSPYL4Q9UJ04 414 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 LAMB4A4D0S4 1761 aa17.62■□□□□ 0.41
PTPN7-218ENST00000496197 FANCIQ9NVI1 1328 aa17.61■□□□□ 0.41
PTPN7-218ENST00000496197 GOLGA2Q08379 1002 aa17.61■□□□□ 0.41
PTPN7-218ENST00000496197 KRT24Q2M2I5 525 aa17.61■□□□□ 0.41
PTPN7-218ENST00000496197 GNAI1P63096 354 aa17.6■□□□□ 0.41
PTPN7-218ENST00000496197 CALD1Q05682 793 aaKnown RBP17.6■□□□□ 0.41
PTPN7-218ENST00000496197 SLFN5Q08AF3 891 aa17.6■□□□□ 0.41
PTPN7-218ENST00000496197 ZNF496Q96IT1 587 aaPredicted RBP17.6■□□□□ 0.41
PTPN7-218ENST00000496197 PRAMEF22A3QJZ6 481 aa17.59■□□□□ 0.41
PTPN7-218ENST00000496197 PTCD1O75127 700 aaKnown RBP17.59■□□□□ 0.41
PTPN7-218ENST00000496197 APBA3O96018 575 aa17.59■□□□□ 0.41
PTPN7-218ENST00000496197 KCNQ4P56696 695 aa17.59■□□□□ 0.41
PTPN7-218ENST00000496197 UPF1Q92900 1129 aaKnown RBP eCLIP17.59■□□□□ 0.417e-8■■■□□ 17.1
PTPN7-218ENST00000496197 NUP188Q5SRE5 1749 aa17.59■□□□□ 0.41
PTPN7-218ENST00000496197 EIF4A1P60842 406 aaKnown RBP17.58■□□□□ 0.41
PTPN7-218ENST00000496197 TRMT2AQ8IZ69 625 aaKnown RBP17.58■□□□□ 0.41
PTPN7-218ENST00000496197 HEG1Q9ULI3 1381 aa17.58■□□□□ 0.4
PTPN7-218ENST00000496197 DEFB132Q7Z7B7 95 aa17.57■□□□□ 0.4
PTPN7-218ENST00000496197 PROM2Q8N271 834 aa17.57■□□□□ 0.4
PTPN7-218ENST00000496197 BABAM1Q9NWV8 329 aa17.57■□□□□ 0.4
PTPN7-218ENST00000496197 DUSP27Q5VZP5 1158 aa17.56■□□□□ 0.4
PTPN7-218ENST00000496197 TTC5Q8N0Z6 440 aa17.56■□□□□ 0.4
PTPN7-218ENST00000496197 RBM42Q9BTD8 480 aaKnown RBP17.56■□□□□ 0.4
PTPN7-218ENST00000496197 MYH14Q7Z406 1995 aaKnown RBP17.56■□□□□ 0.4
PTPN7-218ENST00000496197 E9PSI1 815 aa17.56■□□□□ 0.4
PTPN7-218ENST00000496197 EN1Q05925 392 aaPredicted RBP17.56■□□□□ 0.4
PTPN7-218ENST00000496197 LRRC4BQ9NT99 713 aa17.56■□□□□ 0.4
PTPN7-218ENST00000496197 TUBGCP6Q96RT7 1819 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 LOC102724428A0A0B4J2F2 783 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 PLSCR1O15162 318 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 SIK1P57059 783 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 ITPK1Q13572 414 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 TSPYL6Q8N831 410 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 C8orf58Q8NAV2 365 aa17.55■□□□□ 0.4
PTPN7-218ENST00000496197 SMARCC1Q92922 1105 aaPredicted RBP17.55■□□□□ 0.4
PTPN7-218ENST00000496197 EZH2Q15910 746 aaKnown RBP17.54■□□□□ 0.4
PTPN7-218ENST00000496197 FMNL2Q96PY5 1086 aa17.54■□□□□ 0.4
PTPN7-218ENST00000496197 CAMKK2Q96RR4 588 aa17.54■□□□□ 0.4
PTPN7-218ENST00000496197 C4BP0C0L5 1744 aa17.54■□□□□ 0.4
PTPN7-218ENST00000496197 EXOSC9Q06265 439 aaKnown RBP17.53■□□□□ 0.4
PTPN7-218ENST00000496197 MYH16Q9H6N6 1097 aa17.53■□□□□ 0.4
PTPN7-218ENST00000496197 ELL2O00472 640 aaPredicted RBP17.52■□□□□ 0.4
PTPN7-218ENST00000496197 GIGYF1O75420 1035 aaPredicted RBP17.52■□□□□ 0.4
PTPN7-218ENST00000496197 TXNRD1Q16881 649 aa17.52■□□□□ 0.4
PTPN7-218ENST00000496197 DNAJC10Q8IXB1 793 aa17.52■□□□□ 0.4
PTPN7-218ENST00000496197 ATP6V1AP38606 617 aa17.51■□□□□ 0.39
PTPN7-218ENST00000496197 SF3B2Q13435 895 aaKnown RBP17.51■□□□□ 0.39
PTPN7-218ENST00000496197 CCNL1Q9UK58 526 aaPredicted RBP17.51■□□□□ 0.39
PTPN7-218ENST00000496197 USP16Q9Y5T5 823 aa17.51■□□□□ 0.39
PTPN7-218ENST00000496197 UBR3Q6ZT12 1888 aa17.5■□□□□ 0.39
PTPN7-218ENST00000496197 CCDC125Q86Z20 511 aa17.5■□□□□ 0.39
PTPN7-218ENST00000496197 LINC00116Q8NCU8 138 aa17.5■□□□□ 0.39
PTPN7-218ENST00000496197 BAG6P46379 1132 aa17.5■□□□□ 0.39
PTPN7-218ENST00000496197 VSIG10Q8N0Z9 540 aa17.5■□□□□ 0.39
PTPN7-218ENST00000496197 SNRPA1P09661 255 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms