RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 ERICH6BQ5W0A0 696 aa25.35■■□□□ 1.65
CCM2-216ENST00000488727 UPF1Q92900 1129 aaKnown RBP eCLIP25.34■■□□□ 1.65
CCM2-216ENST00000488727 THUMPD2Q9BTF0 503 aaKnown RBP25.34■■□□□ 1.65
CCM2-216ENST00000488727 PIGBQ92521 554 aa25.34■■□□□ 1.65
CCM2-216ENST00000488727 SLC52A2Q9HAB3 445 aa25.34■■□□□ 1.65
CCM2-216ENST00000488727 CABP4P57796 275 aa25.33■■□□□ 1.65
CCM2-216ENST00000488727 NFATC2IPQ8NCF5 419 aa25.33■■□□□ 1.65
CCM2-216ENST00000488727 TMOD3Q9NYL9 352 aa25.33■■□□□ 1.65
CCM2-216ENST00000488727 LMOD3Q0VAK6 560 aa25.31■■□□□ 1.64
CCM2-216ENST00000488727 TEFQ10587 303 aa25.29■■□□□ 1.64
CCM2-216ENST00000488727 PAPPAQ13219 1627 aa25.29■■□□□ 1.64
CCM2-216ENST00000488727 SALL2Q9Y467 1007 aaPredicted RBP25.29■■□□□ 1.64
CCM2-216ENST00000488727 APBA3O96018 575 aa25.28■■□□□ 1.64
CCM2-216ENST00000488727 CCDC125Q86Z20 511 aa25.28■■□□□ 1.64
CCM2-216ENST00000488727 ASAP1Q9ULH1 1129 aa25.26■■□□□ 1.63
CCM2-216ENST00000488727 RGPD3A6NKT7 1758 aaPredicted RBP25.26■■□□□ 1.63
CCM2-216ENST00000488727 LY75O60449 1722 aa25.26■■□□□ 1.63
CCM2-216ENST00000488727 CCDC27Q2M243 656 aa25.26■■□□□ 1.63
CCM2-216ENST00000488727 NCBP3Q53F19 620 aaKnown RBP25.26■■□□□ 1.63
CCM2-216ENST00000488727 RGPD4Q7Z3J3 1758 aa25.26■■□□□ 1.63
CCM2-216ENST00000488727 SF3B2Q13435 895 aaKnown RBP25.25■■□□□ 1.63
CCM2-216ENST00000488727 ATG3Q9NT62 314 aa25.25■■□□□ 1.63
CCM2-216ENST00000488727 WWC1Q8IX03 1113 aa25.24■■□□□ 1.63
CCM2-216ENST00000488727 DEFB132Q7Z7B7 95 aa25.23■■□□□ 1.63
CCM2-216ENST00000488727 KDM3BQ7LBC6 1761 aa25.23■■□□□ 1.63
CCM2-216ENST00000488727 UBR2Q8IWV8 1755 aa25.23■■□□□ 1.63
CCM2-216ENST00000488727 SLC39A6Q13433 755 aa25.23■■□□□ 1.63
CCM2-216ENST00000488727 PALLDQ8WX93 1383 aa25.22■■□□□ 1.63
CCM2-216ENST00000488727 PLSCR1O15162 318 aa25.22■■□□□ 1.63
CCM2-216ENST00000488727 EN1Q05925 392 aaPredicted RBP25.22■■□□□ 1.63
CCM2-216ENST00000488727 TAF7Q15545 349 aaPredicted RBP25.22■■□□□ 1.63
CCM2-216ENST00000488727 BTBD11A6QL63 1104 aa25.2■■□□□ 1.63
CCM2-216ENST00000488727 BAG6P46379 1132 aa25.2■■□□□ 1.63
CCM2-216ENST00000488727 MIS18AQ9NYP9 233 aa25.2■■□□□ 1.63
CCM2-216ENST00000488727 NGEFQ8N5V2 710 aa25.2■■□□□ 1.62
CCM2-216ENST00000488727 KCPQ6ZWJ8 1503 aa25.19■■□□□ 1.62
CCM2-216ENST00000488727 SMARCC1Q92922 1105 aaPredicted RBP25.19■■□□□ 1.62
CCM2-216ENST00000488727 CAMKK2Q96RR4 588 aa25.19■■□□□ 1.62
CCM2-216ENST00000488727 RREB1Q92766 1687 aa25.18■■□□□ 1.62
CCM2-216ENST00000488727 KCNQ3O43525 872 aa25.18■■□□□ 1.62
CCM2-216ENST00000488727 ZNF790Q6PG37 636 aa25.18■■□□□ 1.62
CCM2-216ENST00000488727 PROM2Q8N271 834 aa25.18■■□□□ 1.62
CCM2-216ENST00000488727 ZNF521Q96K83 1311 aa25.18■■□□□ 1.62
CCM2-216ENST00000488727 SOCS7O14512 581 aa25.17■■□□□ 1.62
CCM2-216ENST00000488727 EZH2Q15910 746 aaKnown RBP25.17■■□□□ 1.62
CCM2-216ENST00000488727 TSHZ2Q9NRE2 1034 aa25.17■■□□□ 1.62
CCM2-216ENST00000488727 RNF123Q5XPI4 1314 aa25.16■■□□□ 1.62
CCM2-216ENST00000488727 PTCD1O75127 700 aaKnown RBP25.15■■□□□ 1.62
CCM2-216ENST00000488727 TXNRD1Q16881 649 aa25.15■■□□□ 1.62
CCM2-216ENST00000488727 CHL1O00533 1208 aa25.15■■□□□ 1.62
CCM2-216ENST00000488727 ZNF853P0CG23 659 aa25.15■■□□□ 1.62
CCM2-216ENST00000488727 KCNQ4P56696 695 aa25.15■■□□□ 1.62
CCM2-216ENST00000488727 CALD1Q05682 793 aaKnown RBP25.15■■□□□ 1.62
CCM2-216ENST00000488727 CFAP44Q96MT7 982 aa25.15■■□□□ 1.62
CCM2-216ENST00000488727 SLC4A9Q96Q91 983 aa25.15■■□□□ 1.62
CCM2-216ENST00000488727 LAS1LQ9Y4W2 734 aaKnown RBP25.15■■□□□ 1.62
CCM2-216ENST00000488727 ZNF831Q5JPB2 1677 aa25.14■■□□□ 1.62
CCM2-216ENST00000488727 TTC5Q8N0Z6 440 aa25.14■■□□□ 1.61
CCM2-216ENST00000488727 NUP188Q5SRE5 1749 aa25.14■■□□□ 1.61
CCM2-216ENST00000488727 TAF1LQ8IZX4 1826 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 LOC102724428A0A0B4J2F2 783 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 SIK1P57059 783 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 WDR63Q8IWG1 891 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 ZNF496Q96IT1 587 aaPredicted RBP25.13■■□□□ 1.61
CCM2-216ENST00000488727 RBM42Q9BTD8 480 aaKnown RBP25.13■■□□□ 1.61
CCM2-216ENST00000488727 LRRC4BQ9NT99 713 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 IFT57Q9NWB7 429 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 TSPYL4Q9UJ04 414 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 TJP1Q07157 1748 aa25.13■■□□□ 1.61
CCM2-216ENST00000488727 BABAM1Q9NWV8 329 aa25.12■■□□□ 1.61
CCM2-216ENST00000488727 CICQ96RK0 1608 aaPredicted RBP25.12■■□□□ 1.61
CCM2-216ENST00000488727 PPP4R2Q9NY27 417 aa25.12■■□□□ 1.61
CCM2-216ENST00000488727 CCNL1Q9UK58 526 aaPredicted RBP25.12■■□□□ 1.61
CCM2-216ENST00000488727 IL16Q14005 1332 aa25.11■■□□□ 1.61
CCM2-216ENST00000488727 C5P01031 1676 aa25.11■■□□□ 1.61
CCM2-216ENST00000488727 GNAI1P63096 354 aa25.11■■□□□ 1.61
CCM2-216ENST00000488727 IRX6P78412 446 aaPredicted RBP25.11■■□□□ 1.61
CCM2-216ENST00000488727 SPINK5Q9NQ38 1064 aaPredicted RBP25.11■■□□□ 1.61
CCM2-216ENST00000488727 MBIPQ9NS73 344 aa25.11■■□□□ 1.61
CCM2-216ENST00000488727 SLC27A3Q5K4L6 730 aa25.09■■□□□ 1.61
CCM2-216ENST00000488727 COL5A3P25940 1745 aaPredicted RBP25.09■■□□□ 1.61
CCM2-216ENST00000488727 ATP6V1AP38606 617 aa25.09■■□□□ 1.61
CCM2-216ENST00000488727 EIF4A1P60842 406 aaKnown RBP25.09■■□□□ 1.61
CCM2-216ENST00000488727 ITPK1Q13572 414 aa25.09■■□□□ 1.61
CCM2-216ENST00000488727 HEG1Q9ULI3 1381 aa25.08■■□□□ 1.61
CCM2-216ENST00000488727 FMNL2Q96PY5 1086 aa25.08■■□□□ 1.61
CCM2-216ENST00000488727 TSR2Q969E8 191 aaKnown RBP25.07■■□□□ 1.6
CCM2-216ENST00000488727 PRAMEF22A3QJZ6 481 aa25.05■■□□□ 1.6
CCM2-216ENST00000488727 VSIG10Q8N0Z9 540 aa25.05■■□□□ 1.6
CCM2-216ENST00000488727 GOLGA2Q08379 1002 aa25.04■■□□□ 1.6
CCM2-216ENST00000488727 KRT24Q2M2I5 525 aa25.04■■□□□ 1.6
CCM2-216ENST00000488727 C4BP0C0L5 1744 aa25.04■■□□□ 1.6
CCM2-216ENST00000488727 FANCIQ9NVI1 1328 aa25.04■■□□□ 1.6
CCM2-216ENST00000488727 DNAJC10Q8IXB1 793 aa25.03■■□□□ 1.6
CCM2-216ENST00000488727 LINC00116Q8NCU8 138 aa25.03■■□□□ 1.6
CCM2-216ENST00000488727 CDCA7LQ96GN5 454 aa25.03■■□□□ 1.6
CCM2-216ENST00000488727 LAMB4A4D0S4 1761 aa25.03■■□□□ 1.6
CCM2-216ENST00000488727 MYH14Q7Z406 1995 aaKnown RBP25.02■■□□□ 1.6
CCM2-216ENST00000488727 GIGYF1O75420 1035 aaPredicted RBP25.01■■□□□ 1.59
CCM2-216ENST00000488727 SNRPA1P09661 255 aaKnown RBP25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms