RNA–Protein interactions for RNA: ENST00000481242.5

GARNL3-216, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 2

Gene GARNL3, Length 4,816 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-216	ENST00000481242	PPP1R42	Q7Z4L9	355 aa		11.19	□□□□□ -0.62
GARNL3-216	ENST00000481242	CCDC184	Q52MB2	194 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	TSPYL1	Q9H0U9	437 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	UGGT2	Q9NYU1	1516 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	ATP2B1	P20020	1258 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	KRT85	P78386	507 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	FAM13B	Q9NYF5	915 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	ITSN2	Q9NZM3	1697 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	SNRPA1	P09661	255 aa	Known RBP	11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	FOSB	P53539	338 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	SMARCE1	Q969G3	411 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	AK7	Q96M32	723 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	LUC7L	Q9NQ29	371 aa	Known RBP	11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	ABCF2	Q9UG63	623 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	ANKRD24	Q8TF21	1146 aa		11.18	□□□□□ -0.62
GARNL3-216	ENST00000481242	UBAP1L	F5GYI3	381 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	TXLNB	Q8N3L3	684 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	MYD88	Q99836	296 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	RNF41	Q9H4P4	317 aa	Predicted RBP	11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	CFAP45	Q9UL16	551 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	RIMS2	Q9UQ26	1411 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	CCP110	O43303	1012 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	HMGB1	P09429	215 aa	Known RBP	11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	TMEM57	Q8N5G2	664 aa		11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	KRI1	Q8N9T8	703 aa	Known RBP	11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.17	□□□□□ -0.62
GARNL3-216	ENST00000481242	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	C11orf95	C9JLR9	678 aa	Predicted RBP	11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	MX1	P20591	662 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	NUP133	Q8WUM0	1156 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	ANKIB1	Q9P2G1	1089 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	SYCP1	Q15431	976 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	DZIP1	Q86YF9	867 aa	Known RBP	11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	IL1RAPL2	Q9NP60	686 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	MYO6	Q9UM54	1294 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	TBX22	Q9Y458	520 aa		11.16	□□□□□ -0.62
GARNL3-216	ENST00000481242	RARS	P54136	660 aa	Known RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	NAP1L1	P55209	391 aa	Known RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	TTF1	Q15361	905 aa	Predicted RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	SSH1	Q8WYL5	1049 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	PIK3R4	Q99570	1358 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	NUP153	P49790	1475 aa	Known RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	USP5	P45974	858 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	LARP1B	Q659C4	914 aa	Known RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	ACBD3	Q9H3P7	528 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	CEP131	Q9UPN4	1083 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	NKTR	P30414	1462 aa	Known RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	FLII	Q13045	1269 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	PDRG1	Q9NUG6	133 aa		11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242	CWC25	Q9NXE8	425 aa	Predicted RBP	11.15	□□□□□ -0.62
GARNL3-216	ENST00000481242		K7ELQ4	463 aa	Predicted RBP	11.15	□□□□□ -0.63
GARNL3-216	ENST00000481242	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.15	□□□□□ -0.63
GARNL3-216	ENST00000481242	DDX46	Q7L014	1031 aa	Known RBP	11.15	□□□□□ -0.63
GARNL3-216	ENST00000481242	ZCRB1	Q8TBF4	217 aa	Known RBP	11.15	□□□□□ -0.63
GARNL3-216	ENST00000481242	RALGAPB	Q86X10	1494 aa		11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	POLR3D	P05423	398 aa	Predicted RBP	11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	IQCA1	Q86XH1	822 aa		11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	TNIP1	Q15025	636 aa		11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	USHBP1	Q8N6Y0	703 aa		11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	NAPB	Q9H115	298 aa		11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	ZNHIT6	Q9NWK9	470 aa	Known RBP	11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	MKNK2	Q9HBH9	465 aa		11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	CWC27	Q6UX04	472 aa	Known RBP	11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	LRRC59	Q96AG4	307 aa	Known RBP	11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	JAKMIP1	Q96N16	626 aa	Known RBP	11.14	□□□□□ -0.63
GARNL3-216	ENST00000481242	MPHOSPH10	O00566	681 aa	Known RBP	11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	TRAK2	O60296	914 aa		11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	THUMPD2	Q9BTF0	503 aa	Known RBP	11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	EXOC6B	Q9Y2D4	811 aa		11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	ABCC2	Q92887	1545 aa		11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	RFC4	P35249	363 aa		11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	MIS18A	Q9NYP9	233 aa		11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	ARHGAP45	Q92619	1136 aa		11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	SEC63	Q9UGP8	760 aa	Known RBP	11.13	□□□□□ -0.63
GARNL3-216	ENST00000481242	ZNF76	P36508	570 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	ME1	P48163	572 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	PPP4R3B	Q5MIZ7	849 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	BAG3	O95817	575 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	DCTN1	Q14203	1278 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	MNS1	Q8NEH6	495 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	CTCFL	Q8NI51	663 aa	Predicted RBP	11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	DNAI2	Q9GZS0	605 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	PHAX	Q9H814	394 aa	Known RBP	11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	FIBP	O43427	364 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	UQCRFS1P1	P0C7P4	283 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	CCDC192	P0DO97	292 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	ST5	P78524	1137 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	TRAF1	Q13077	416 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	ZNF592	Q92610	1267 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	TRPM2	O94759	1503 aa		11.12	□□□□□ -0.63
GARNL3-216	ENST00000481242	ZFYVE27	Q5T4F4	411 aa		11.11	□□□□□ -0.63
GARNL3-216	ENST00000481242	LDHAL6A	Q6ZMR3	332 aa		11.11	□□□□□ -0.63

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