RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 VIRMAQ69YN4 1812 aaKnown RBP22.45■■□□□ 1.18
SCAF11-206ENST00000474828 NEFMP07197 916 aa22.44■■□□□ 1.18
SCAF11-206ENST00000474828 PALLDQ8WX93 1383 aa22.44■■□□□ 1.18
SCAF11-206ENST00000474828 LRRC4BQ9NT99 713 aa22.44■■□□□ 1.18
SCAF11-206ENST00000474828 MAPK8IP3Q9UPT6 1336 aa22.43■■□□□ 1.18
SCAF11-206ENST00000474828 ASAP1Q9ULH1 1129 aa22.43■■□□□ 1.18
SCAF11-206ENST00000474828 CICQ96RK0 1608 aaPredicted RBP22.42■■□□□ 1.18
SCAF11-206ENST00000474828 TMPOP42166 694 aaKnown RBP22.42■■□□□ 1.18
SCAF11-206ENST00000474828 KAT6BQ8WYB5 2073 aa22.42■■□□□ 1.18
SCAF11-206ENST00000474828 CCER2I3L3R5 266 aa22.41■■□□□ 1.18
SCAF11-206ENST00000474828 DLG5Q8TDM6 1919 aa22.41■■□□□ 1.18
SCAF11-206ENST00000474828 DIEXFQ68CQ4 756 aaKnown RBP22.4■■□□□ 1.18
SCAF11-206ENST00000474828 HMGB2P26583 209 aaKnown RBP22.39■■□□□ 1.17
SCAF11-206ENST00000474828 NCBP3Q53F19 620 aaKnown RBP22.39■■□□□ 1.17
SCAF11-206ENST00000474828 LOC102724428A0A0B4J2F2 783 aa22.37■■□□□ 1.17
SCAF11-206ENST00000474828 SIK1P57059 783 aa22.37■■□□□ 1.17
SCAF11-206ENST00000474828 CCDC146Q8IYE0 955 aa22.37■■□□□ 1.17
SCAF11-206ENST00000474828 RTF1Q92541 710 aaKnown RBP22.37■■□□□ 1.17
SCAF11-206ENST00000474828 SLC4A9Q96Q91 983 aa22.37■■□□□ 1.17
SCAF11-206ENST00000474828 UBR2Q8IWV8 1755 aa22.37■■□□□ 1.17
SCAF11-206ENST00000474828 KCPQ6ZWJ8 1503 aa22.36■■□□□ 1.17
SCAF11-206ENST00000474828 TEFQ10587 303 aa22.36■■□□□ 1.17
SCAF11-206ENST00000474828 MCM10Q7L590 875 aa22.36■■□□□ 1.17
SCAF11-206ENST00000474828 CCNL1Q9UK58 526 aaPredicted RBP22.36■■□□□ 1.17
SCAF11-206ENST00000474828 RIPK4P57078 832 aa22.35■■□□□ 1.17
SCAF11-206ENST00000474828 AKT1S1Q96B36 256 aa22.35■■□□□ 1.17
SCAF11-206ENST00000474828 ANO8Q9HCE9 1232 aaPredicted RBP22.35■■□□□ 1.17
SCAF11-206ENST00000474828 TRIM35Q9UPQ4 493 aa22.35■■□□□ 1.17
SCAF11-206ENST00000474828 TAF1LQ8IZX4 1826 aa22.34■■□□□ 1.17
SCAF11-206ENST00000474828 PSDA5PKW4 1024 aaPredicted RBP22.34■■□□□ 1.17
SCAF11-206ENST00000474828 LMOD3Q0VAK6 560 aa22.34■■□□□ 1.17
SCAF11-206ENST00000474828 DCTN1Q14203 1278 aa22.34■■□□□ 1.17
SCAF11-206ENST00000474828 NBPF14Q5TI25 921 aa22.34■■□□□ 1.17
SCAF11-206ENST00000474828 C5P01031 1676 aa22.33■■□□□ 1.16
SCAF11-206ENST00000474828 ITPK1Q13572 414 aa22.32■■□□□ 1.16
SCAF11-206ENST00000474828 TAF7Q15545 349 aaPredicted RBP22.32■■□□□ 1.16
SCAF11-206ENST00000474828 SLC15A2Q16348 729 aa22.32■■□□□ 1.16
SCAF11-206ENST00000474828 ZNF790Q6PG37 636 aa22.32■■□□□ 1.16
SCAF11-206ENST00000474828 VSIG10Q8N0Z9 540 aa22.32■■□□□ 1.16
SCAF11-206ENST00000474828 APAF1O14727 1248 aa22.31■■□□□ 1.16
SCAF11-206ENST00000474828 BABAM1Q9NWV8 329 aa22.31■■□□□ 1.16
SCAF11-206ENST00000474828 QSER1Q2KHR3 1735 aa22.31■■□□□ 1.16
SCAF11-206ENST00000474828 ADRA2BP18089 450 aa22.3■■□□□ 1.16
SCAF11-206ENST00000474828 KCNQ4P56696 695 aa22.3■■□□□ 1.16
SCAF11-206ENST00000474828 SLC39A6Q13433 755 aa22.3■■□□□ 1.16
SCAF11-206ENST00000474828 ZNF827Q17R98 1081 aa22.3■■□□□ 1.16
SCAF11-206ENST00000474828 CCDC27Q2M243 656 aa22.3■■□□□ 1.16
SCAF11-206ENST00000474828 COL5A3P25940 1745 aaPredicted RBP22.3■■□□□ 1.16
SCAF11-206ENST00000474828 TJP1Q07157 1748 aa22.29■■□□□ 1.16
SCAF11-206ENST00000474828 C4BP0C0L5 1744 aa22.28■■□□□ 1.16
SCAF11-206ENST00000474828 BTBD11A6QL63 1104 aa22.28■■□□□ 1.16
SCAF11-206ENST00000474828 ATP6V1AP38606 617 aa22.28■■□□□ 1.16
SCAF11-206ENST00000474828 LINC00116Q8NCU8 138 aa22.28■■□□□ 1.16
SCAF11-206ENST00000474828 RRP7AQ9Y3A4 280 aaKnown RBP22.28■■□□□ 1.16
SCAF11-206ENST00000474828 KDM3BQ7LBC6 1761 aa22.27■■□□□ 1.16
SCAF11-206ENST00000474828 HEG1Q9ULI3 1381 aa22.27■■□□□ 1.16
SCAF11-206ENST00000474828 RC3H1Q5TC82 1133 aaKnown RBP22.27■■□□□ 1.16
SCAF11-206ENST00000474828 THUMPD2Q9BTF0 503 aaKnown RBP22.27■■□□□ 1.16
SCAF11-206ENST00000474828 STK32BQ9NY57 414 aa22.27■■□□□ 1.16
SCAF11-206ENST00000474828 CASZ1Q86V15 1759 aa22.26■■□□□ 1.15
SCAF11-206ENST00000474828 PTCD1O75127 700 aaKnown RBP22.26■■□□□ 1.15
SCAF11-206ENST00000474828 R3HDM1Q15032 1099 aaKnown RBP22.26■■□□□ 1.15
SCAF11-206ENST00000474828 MIER1Q8N108 512 aa22.26■■□□□ 1.15
SCAF11-206ENST00000474828 ZNF496Q96IT1 587 aaPredicted RBP22.26■■□□□ 1.15
SCAF11-206ENST00000474828 CNTNAP4Q9C0A0 1308 aa22.26■■□□□ 1.15
SCAF11-206ENST00000474828 NGEFQ8N5V2 710 aa22.25■■□□□ 1.15
SCAF11-206ENST00000474828 RBM42Q9BTD8 480 aaKnown RBP22.25■■□□□ 1.15
SCAF11-206ENST00000474828 LRP5O75197 1615 aa22.24■■□□□ 1.15
SCAF11-206ENST00000474828 KCNQ3O43525 872 aa22.24■■□□□ 1.15
SCAF11-206ENST00000474828 TTC5Q8N0Z6 440 aa22.24■■□□□ 1.15
SCAF11-206ENST00000474828 CHL1O00533 1208 aa22.23■■□□□ 1.15
SCAF11-206ENST00000474828 ZNF853P0CG23 659 aa22.23■■□□□ 1.15
SCAF11-206ENST00000474828 NEUROD2Q15784 382 aa22.23■■□□□ 1.15
SCAF11-206ENST00000474828 FMNL2Q96PY5 1086 aa22.23■■□□□ 1.15
SCAF11-206ENST00000474828 TUBGCP6Q96RT7 1819 aa22.22■■□□□ 1.15
SCAF11-206ENST00000474828 FAM9BQ8IZU0 186 aa22.22■■□□□ 1.15
SCAF11-206ENST00000474828 PNPLA7Q6ZV29 1317 aa22.22■■□□□ 1.15
SCAF11-206ENST00000474828 CYP19A1P11511 503 aaPredicted RBP22.21■■□□□ 1.15
SCAF11-206ENST00000474828 TEX13AQ9BXU3 409 aaPredicted RBP22.21■■□□□ 1.15
SCAF11-206ENST00000474828 UBR3Q6ZT12 1888 aa22.21■■□□□ 1.15
SCAF11-206ENST00000474828 EIF4A1P60842 406 aaKnown RBP22.2■■□□□ 1.14
SCAF11-206ENST00000474828 DNAJC10Q8IXB1 793 aa22.2■■□□□ 1.14
SCAF11-206ENST00000474828 CFAP44Q96MT7 982 aa22.2■■□□□ 1.14
SCAF11-206ENST00000474828 INTS5Q6P9B9 1019 aaKnown RBP22.19■■□□□ 1.14
SCAF11-206ENST00000474828 AMIGO3Q86WK7 504 aa22.19■■□□□ 1.14
SCAF11-206ENST00000474828 WWC1Q8IX03 1113 aa22.19■■□□□ 1.14
SCAF11-206ENST00000474828 FLAD1Q8NFF5 587 aa22.19■■□□□ 1.14
SCAF11-206ENST00000474828 MIS18AQ9NYP9 233 aa22.19■■□□□ 1.14
SCAF11-206ENST00000474828 MYH14Q7Z406 1995 aaKnown RBP22.19■■□□□ 1.14
SCAF11-206ENST00000474828 SSFA2P28290 1259 aa22.18■■□□□ 1.14
SCAF11-206ENST00000474828 CALD1Q05682 793 aaKnown RBP22.18■■□□□ 1.14
SCAF11-206ENST00000474828 TFCP2L1Q9NZI6 479 aa22.18■■□□□ 1.14
SCAF11-206ENST00000474828 COL24A1Q17RW2 1714 aa22.17■■□□□ 1.14
SCAF11-206ENST00000474828 IL16Q14005 1332 aa22.17■■□□□ 1.14
SCAF11-206ENST00000474828 RPS6KA4O75676 772 aa22.17■■□□□ 1.14
SCAF11-206ENST00000474828 SNRPA1P09661 255 aaKnown RBP22.17■■□□□ 1.14
SCAF11-206ENST00000474828 CRKLP46109 303 aaKnown RBP22.17■■□□□ 1.14
SCAF11-206ENST00000474828 SLC16A10Q8TF71 515 aa22.17■■□□□ 1.14
SCAF11-206ENST00000474828 PDGFDQ9GZP0 370 aaPredicted RBP22.17■■□□□ 1.14
SCAF11-206ENST00000474828 IFT57Q9NWB7 429 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms