RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SWAP70Q9UH65 585 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 PRPHP41219 470 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 SEPT6Q14141 434 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 GPRASP1Q5JY77 1395 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 RAPGEF4Q8WZA2 1011 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 ARHGAP5Q13017 1502 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 CCDC50Q8IVM0 306 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 USH1CQ9Y6N9 552 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 KLHL40Q2TBA0 621 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 SOGA3Q5TF21 947 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 OPA1O60313 960 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 LTV1Q96GA3 475 aaPredicted RBP15.42■□□□□ 0.06
COL6A3-209ENST00000472056 KIAA1107Q9UPP5 1409 aa15.41■□□□□ 0.06
COL6A3-209ENST00000472056 FSD2A1L4K1 749 aa15.41■□□□□ 0.06
COL6A3-209ENST00000472056 FYB1O15117 783 aa15.41■□□□□ 0.06
COL6A3-209ENST00000472056 PPP4R3BQ5MIZ7 849 aa15.41■□□□□ 0.06
COL6A3-209ENST00000472056 EIF2AK4Q9P2K8 1649 aaKnown RBP15.41■□□□□ 0.06
COL6A3-209ENST00000472056 DNAJC21Q5F1R6 531 aaKnown RBP15.41■□□□□ 0.06
COL6A3-209ENST00000472056 CCDC9Q9Y3X0 531 aaKnown RBP15.41■□□□□ 0.06
COL6A3-209ENST00000472056 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.41■□□□□ 0.06
COL6A3-209ENST00000472056 ALDH1L2Q3SY69 923 aa15.41■□□□□ 0.06
COL6A3-209ENST00000472056 CPSF2Q9P2I0 782 aaKnown RBP15.41■□□□□ 0.06
COL6A3-209ENST00000472056 RAD21O60216 631 aa15.41■□□□□ 0.06
COL6A3-209ENST00000472056 SNW1Q13573 536 aaKnown RBP15.41■□□□□ 0.06
COL6A3-209ENST00000472056 CADPSQ9ULU8 1353 aa15.4■□□□□ 0.06
COL6A3-209ENST00000472056 ANAPC15P60006 121 aa15.4■□□□□ 0.06
COL6A3-209ENST00000472056 MYO10Q9HD67 2058 aa15.4■□□□□ 0.06
COL6A3-209ENST00000472056 TCP11L2Q8N4U5 519 aa15.4■□□□□ 0.06
COL6A3-209ENST00000472056 FAM177A1Q8N128 213 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-209ENST00000472056 HSF2BPO75031 334 aa15.4■□□□□ 0.06
COL6A3-209ENST00000472056 RBM25P49756 843 aaKnown RBP15.4■□□□□ 0.06
COL6A3-209ENST00000472056 TWISTNBQ3B726 338 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-209ENST00000472056 CEP128Q6ZU80 1094 aa15.39■□□□□ 0.05
COL6A3-209ENST00000472056 DDX23Q9BUQ8 820 aaKnown RBP15.39■□□□□ 0.05
COL6A3-209ENST00000472056 ZSCAN16Q9H4T2 348 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-209ENST00000472056 GAPVD1Q14C86 1478 aa15.39■□□□□ 0.05
COL6A3-209ENST00000472056 MLECQ14165 292 aa15.39■□□□□ 0.05
COL6A3-209ENST00000472056 TTC12Q9H892 705 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-209ENST00000472056 CCDC155Q8N6L0 562 aa15.39■□□□□ 0.05
COL6A3-209ENST00000472056 GLRX3O76003 335 aaKnown RBP15.39■□□□□ 0.05
COL6A3-209ENST00000472056 SPECC1Q5M775 1068 aa15.39■□□□□ 0.05
COL6A3-209ENST00000472056 GSTTP1A0A1W2PQM5 241 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 ADAMTS8Q9UP79 889 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 RPGRIP1LQ68CZ1 1315 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 MAP3K1Q13233 1512 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 TOP2BQ02880 1626 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 AIMP1Q12904 312 aaKnown RBP15.38■□□□□ 0.05
COL6A3-209ENST00000472056 LRRC27Q9C0I9 530 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 CFAP65Q6ZU64 1925 aaKnown RBP15.38■□□□□ 0.05
COL6A3-209ENST00000472056 GON4LQ3T8J9 2241 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 ANKRD30BQ9BXX2 1392 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 PTPN23Q9H3S7 1636 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 ERBINQ96RT1 1412 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 UBAC1Q9BSL1 405 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 CBX1P83916 185 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 AMPD3Q01432 767 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 TUBB2AQ13885 445 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 B4GALNT4Q76KP1 1039 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 TUBB2BQ9BVA1 445 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 A0A1B0GUA9 196 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 PSME1Q06323 249 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 TTC39AQ5SRH9 613 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 CEP135Q66GS9 1140 aa15.38■□□□□ 0.05
COL6A3-209ENST00000472056 KIF3CO14782 793 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 TERF1P54274 439 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 CTCFLQ8NI51 663 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-209ENST00000472056 CACNA2D4Q7Z3S7 1137 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 BMP15O95972 392 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 RSRC1Q96IZ7 334 aaKnown RBP15.37■□□□□ 0.05
COL6A3-209ENST00000472056 TMEM132AQ24JP5 1023 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 CCDC94Q9BW85 323 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-209ENST00000472056 URI1O94763 535 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-209ENST00000472056 PPP2R1AP30153 589 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 TNIP1Q15025 636 aa15.37■□□□□ 0.05
COL6A3-209ENST00000472056 RNF187Q5TA31 235 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-209ENST00000472056 NOB1Q9ULX3 412 aaKnown RBP15.37■□□□□ 0.05
COL6A3-209ENST00000472056 EBAG9O00559 213 aa15.36■□□□□ 0.05
COL6A3-209ENST00000472056 ARFGAP2Q8N6H7 521 aa15.36■□□□□ 0.05
COL6A3-209ENST00000472056 RASAL2Q9UJF2 1139 aa15.36■□□□□ 0.05
COL6A3-209ENST00000472056 PLEKHO1Q53GL0 409 aaPredicted RBP15.36■□□□□ 0.05
COL6A3-209ENST00000472056 RBM28Q9NW13 759 aaKnown RBP15.36■□□□□ 0.05
COL6A3-209ENST00000472056 IKQ13123 557 aaPredicted RBP15.36■□□□□ 0.05
COL6A3-209ENST00000472056 FERP16591 822 aa15.36■□□□□ 0.05
COL6A3-209ENST00000472056 FOSBP53539 338 aa15.36■□□□□ 0.05
COL6A3-209ENST00000472056 TICAM2Q86XR7 235 aa15.36■□□□□ 0.05
COL6A3-209ENST00000472056 CASTP20810 708 aaKnown RBP15.35■□□□□ 0.05
COL6A3-209ENST00000472056 GRIPAP1Q4V328 841 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 MSL1Q68DK7 614 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 TTC21AQ8NDW8 1320 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 FAM135AQ9P2D6 1515 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 JAKMIP2Q96AA8 810 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 NUP88Q99567 741 aaPredicted RBP15.35■□□□□ 0.05
COL6A3-209ENST00000472056 HMG20BQ9P0W2 317 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 KIF1BPQ96EK5 621 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL6A3-209ENST00000472056 ZNF692Q9BU19 519 aaPredicted RBP15.35■□□□□ 0.05
COL6A3-209ENST00000472056 IKBKGQ9Y6K9 419 aa15.35■□□□□ 0.05
COL6A3-209ENST00000472056 LMAN1P49257 510 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 MTHFSP49914 203 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 CEBPZQ03701 1054 aaKnown RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms