RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 BCL11BQ9C0K0 894 aaPredicted RBP19.46■□□□□ 0.71
COL9A3-209ENST00000469852 SLC52A2Q9HAB3 445 aa19.46■□□□□ 0.71
COL9A3-209ENST00000469852 PAPPAQ13219 1627 aa19.45■□□□□ 0.7
COL9A3-209ENST00000469852 CABP4P57796 275 aa19.45■□□□□ 0.7
COL9A3-209ENST00000469852 TMOD3Q9NYL9 352 aa19.44■□□□□ 0.7
COL9A3-209ENST00000469852 BAG6P46379 1132 aa19.43■□□□□ 0.7
COL9A3-209ENST00000469852 LMOD3Q0VAK6 560 aa19.43■□□□□ 0.7
COL9A3-209ENST00000469852 TEFQ10587 303 aa19.42■□□□□ 0.7
COL9A3-209ENST00000469852 LRP5O75197 1615 aa19.42■□□□□ 0.7
COL9A3-209ENST00000469852 CCDC27Q2M243 656 aa19.41■□□□□ 0.7
COL9A3-209ENST00000469852 WWC1Q8IX03 1113 aa19.41■□□□□ 0.7
COL9A3-209ENST00000469852 ASAP1Q9ULH1 1129 aa19.41■□□□□ 0.7
COL9A3-209ENST00000469852 KDM3BQ7LBC6 1761 aa19.4■□□□□ 0.7
COL9A3-209ENST00000469852 SLC39A6Q13433 755 aa19.4■□□□□ 0.7
COL9A3-209ENST00000469852 ATG3Q9NT62 314 aa19.4■□□□□ 0.7
COL9A3-209ENST00000469852 MIS18AQ9NYP9 233 aa19.4■□□□□ 0.7
COL9A3-209ENST00000469852 LY75O60449 1722 aa19.39■□□□□ 0.7
COL9A3-209ENST00000469852 UBR2Q8IWV8 1755 aa19.39■□□□□ 0.7
COL9A3-209ENST00000469852 APBA3O96018 575 aa19.39■□□□□ 0.69
COL9A3-209ENST00000469852 EN1Q05925 392 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-209ENST00000469852 NCBP3Q53F19 620 aaKnown RBP19.39■□□□□ 0.69
COL9A3-209ENST00000469852 ZNF521Q96K83 1311 aa19.39■□□□□ 0.69
COL9A3-209ENST00000469852 PSDA5PKW4 1024 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-209ENST00000469852 KCNQ3O43525 872 aa19.38■□□□□ 0.69
COL9A3-209ENST00000469852 KCPQ6ZWJ8 1503 aa19.38■□□□□ 0.69
COL9A3-209ENST00000469852 RGPD3A6NKT7 1758 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-209ENST00000469852 RGPD4Q7Z3J3 1758 aa19.37■□□□□ 0.69
COL9A3-209ENST00000469852 PALLDQ8WX93 1383 aa19.37■□□□□ 0.69
COL9A3-209ENST00000469852 HNRNPUQ00839 825 aaKnown RBP eCLIP19.37■□□□□ 0.69
COL9A3-209ENST00000469852 TAF7Q15545 349 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-209ENST00000469852 BTBD11A6QL63 1104 aa19.36■□□□□ 0.69
COL9A3-209ENST00000469852 SPINK5Q9NQ38 1064 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-209ENST00000469852 ZNF853P0CG23 659 aa19.34■□□□□ 0.69
COL9A3-209ENST00000469852 ZNF790Q6PG37 636 aa19.34■□□□□ 0.69
COL9A3-209ENST00000469852 PROM2Q8N271 834 aa19.34■□□□□ 0.69
COL9A3-209ENST00000469852 SLC4A9Q96Q91 983 aa19.34■□□□□ 0.69
COL9A3-209ENST00000469852 LAS1LQ9Y4W2 734 aaKnown RBP19.34■□□□□ 0.69
COL9A3-209ENST00000469852 RREB1Q92766 1687 aa19.33■□□□□ 0.69
COL9A3-209ENST00000469852 CHL1O00533 1208 aa19.33■□□□□ 0.68
COL9A3-209ENST00000469852 PLSCR1O15162 318 aa19.33■□□□□ 0.68
COL9A3-209ENST00000469852 KCNQ4P56696 695 aa19.33■□□□□ 0.68
COL9A3-209ENST00000469852 EZH2Q15910 746 aaKnown RBP19.33■□□□□ 0.68
COL9A3-209ENST00000469852 NGEFQ8N5V2 710 aa19.33■□□□□ 0.68
COL9A3-209ENST00000469852 CAMKK2Q96RR4 588 aa19.33■□□□□ 0.68
COL9A3-209ENST00000469852 TJP1Q07157 1748 aa19.33■□□□□ 0.68
COL9A3-209ENST00000469852 PTCD1O75127 700 aaKnown RBP19.32■□□□□ 0.68
COL9A3-209ENST00000469852 CFAP44Q96MT7 982 aa19.32■□□□□ 0.68
COL9A3-209ENST00000469852 TSPYL4Q9UJ04 414 aa19.32■□□□□ 0.68
COL9A3-209ENST00000469852 C5P01031 1676 aa19.31■□□□□ 0.68
COL9A3-209ENST00000469852 WDR63Q8IWG1 891 aa19.31■□□□□ 0.68
COL9A3-209ENST00000469852 SMARCC1Q92922 1105 aaPredicted RBP19.31■□□□□ 0.68
COL9A3-209ENST00000469852 ZNF496Q96IT1 587 aaPredicted RBP19.31■□□□□ 0.68
COL9A3-209ENST00000469852 RBM42Q9BTD8 480 aaKnown RBP19.31■□□□□ 0.68
COL9A3-209ENST00000469852 MBIPQ9NS73 344 aa19.31■□□□□ 0.68
COL9A3-209ENST00000469852 LRRC4BQ9NT99 713 aa19.31■□□□□ 0.68
COL9A3-209ENST00000469852 IFT57Q9NWB7 429 aa19.31■□□□□ 0.68
COL9A3-209ENST00000469852 NUP188Q5SRE5 1749 aa19.31■□□□□ 0.68
COL9A3-209ENST00000469852 TAF1LQ8IZX4 1826 aa19.3■□□□□ 0.68
COL9A3-209ENST00000469852 IL16Q14005 1332 aa19.3■□□□□ 0.68
COL9A3-209ENST00000469852 TXNRD1Q16881 649 aa19.3■□□□□ 0.68
COL9A3-209ENST00000469852 TTC5Q8N0Z6 440 aa19.3■□□□□ 0.68
COL9A3-209ENST00000469852 TSR2Q969E8 191 aaKnown RBP19.3■□□□□ 0.68
COL9A3-209ENST00000469852 ZNF831Q5JPB2 1677 aa19.3■□□□□ 0.68
COL9A3-209ENST00000469852 CICQ96RK0 1608 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-209ENST00000469852 LOC102724428A0A0B4J2F2 783 aa19.29■□□□□ 0.68
COL9A3-209ENST00000469852 SIK1P57059 783 aa19.29■□□□□ 0.68
COL9A3-209ENST00000469852 GNAI1P63096 354 aa19.29■□□□□ 0.68
COL9A3-209ENST00000469852 CALD1Q05682 793 aaKnown RBP19.29■□□□□ 0.68
COL9A3-209ENST00000469852 R3HDM1Q15032 1099 aaKnown RBP19.29■□□□□ 0.68
COL9A3-209ENST00000469852 CDCA7LQ96GN5 454 aa19.29■□□□□ 0.68
COL9A3-209ENST00000469852 COL5A3P25940 1745 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-209ENST00000469852 PRAMEF22A3QJZ6 481 aa19.28■□□□□ 0.68
COL9A3-209ENST00000469852 EIF4A1P60842 406 aaKnown RBP19.28■□□□□ 0.68
COL9A3-209ENST00000469852 ITPK1Q13572 414 aa19.28■□□□□ 0.68
COL9A3-209ENST00000469852 KRT24Q2M2I5 525 aa19.28■□□□□ 0.68
COL9A3-209ENST00000469852 YTHDC1Q96MU7 727 aaKnown RBP19.28■□□□□ 0.68
COL9A3-209ENST00000469852 BABAM1Q9NWV8 329 aa19.28■□□□□ 0.68
COL9A3-209ENST00000469852 CCNL1Q9UK58 526 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-209ENST00000469852 HEG1Q9ULI3 1381 aa19.27■□□□□ 0.68
COL9A3-209ENST00000469852 ZBED9Q6R2W3 1325 aa19.26■□□□□ 0.67
COL9A3-209ENST00000469852 FANCIQ9NVI1 1328 aa19.26■□□□□ 0.67
COL9A3-209ENST00000469852 GOLGA2Q08379 1002 aa19.26■□□□□ 0.67
COL9A3-209ENST00000469852 FMNL2Q96PY5 1086 aa19.26■□□□□ 0.67
COL9A3-209ENST00000469852 ATP6V1AP38606 617 aa19.25■□□□□ 0.67
COL9A3-209ENST00000469852 DNAJC10Q8IXB1 793 aa19.25■□□□□ 0.67
COL9A3-209ENST00000469852 LAMB4A4D0S4 1761 aa19.24■□□□□ 0.67
COL9A3-209ENST00000469852 SLFN5Q08AF3 891 aa19.24■□□□□ 0.67
COL9A3-209ENST00000469852 LINC00116Q8NCU8 138 aa19.24■□□□□ 0.67
COL9A3-209ENST00000469852 C4BP0C0L5 1744 aa19.23■□□□□ 0.67
COL9A3-209ENST00000469852 SLC27A3Q5K4L6 730 aa19.23■□□□□ 0.67
COL9A3-209ENST00000469852 MYH14Q7Z406 1995 aaKnown RBP19.23■□□□□ 0.67
COL9A3-209ENST00000469852 GIGYF1O75420 1035 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-209ENST00000469852 VSIG10Q8N0Z9 540 aa19.22■□□□□ 0.67
COL9A3-209ENST00000469852 C8orf58Q8NAV2 365 aa19.22■□□□□ 0.67
COL9A3-209ENST00000469852 TUBGCP6Q96RT7 1819 aa19.21■□□□□ 0.67
COL9A3-209ENST00000469852 TRMT2AQ8IZ69 625 aaKnown RBP19.21■□□□□ 0.67
COL9A3-209ENST00000469852 TSPYL6Q8N831 410 aa19.21■□□□□ 0.67
COL9A3-209ENST00000469852 ANO8Q9HCE9 1232 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-209ENST00000469852 USP16Q9Y5T5 823 aa19.21■□□□□ 0.67
COL9A3-209ENST00000469852 E9PSI1 815 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 173.4 ms