RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 RIPK4P57078 832 aa15.77■□□□□ 0.12
VPS13D-204ENST00000469054 ATG3Q9NT62 314 aa15.77■□□□□ 0.12
VPS13D-204ENST00000469054 ASAP1Q9ULH1 1129 aa15.77■□□□□ 0.12
VPS13D-204ENST00000469054 DOT1LQ8TEK3 1739 aa15.77■□□□□ 0.11
VPS13D-204ENST00000469054 CEMIPQ8WUJ3 1361 aa15.76■□□□□ 0.11
VPS13D-204ENST00000469054 DCTN1Q14203 1278 aa15.76■□□□□ 0.11
VPS13D-204ENST00000469054 MCM10Q7L590 875 aa15.76■□□□□ 0.11
VPS13D-204ENST00000469054 MIER1Q8N108 512 aa15.76■□□□□ 0.11
VPS13D-204ENST00000469054 TOGARAM1Q9Y4F4 1720 aa15.76■□□□□ 0.11
VPS13D-204ENST00000469054 PALLDQ8WX93 1383 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 APAF1O14727 1248 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 TEFQ10587 303 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 NEUROD2Q15784 382 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 SLC27A3Q5K4L6 730 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 FAM9BQ8IZU0 186 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 RRP7AQ9Y3A4 280 aaKnown RBP15.75■□□□□ 0.11
VPS13D-204ENST00000469054 KAT6BQ8WYB5 2073 aa15.75■□□□□ 0.11
VPS13D-204ENST00000469054 LMOD3Q0VAK6 560 aa15.74■□□□□ 0.11
VPS13D-204ENST00000469054 LRRC4BQ9NT99 713 aa15.73■□□□□ 0.11
VPS13D-204ENST00000469054 CCNL1Q9UK58 526 aaPredicted RBP15.73■□□□□ 0.11
VPS13D-204ENST00000469054 MRC1P22897 1456 aa15.72■□□□□ 0.11
VPS13D-204ENST00000469054 LOC102724428A0A0B4J2F2 783 aa15.72■□□□□ 0.11
VPS13D-204ENST00000469054 SIK1P57059 783 aa15.72■□□□□ 0.11
VPS13D-204ENST00000469054 BTAF1O14981 1849 aa15.72■□□□□ 0.11
VPS13D-204ENST00000469054 ADAMTS7Q9UKP4 1686 aa15.71■□□□□ 0.11
VPS13D-204ENST00000469054 KCNQ4P56696 695 aa15.71■□□□□ 0.11
VPS13D-204ENST00000469054 SLC39A6Q13433 755 aa15.71■□□□□ 0.11
VPS13D-204ENST00000469054 NBPF14Q5TI25 921 aa15.71■□□□□ 0.11
VPS13D-204ENST00000469054 THUMPD2Q9BTF0 503 aaKnown RBP15.71■□□□□ 0.11
VPS13D-204ENST00000469054 TRIM35Q9UPQ4 493 aa15.71■□□□□ 0.11
VPS13D-204ENST00000469054 BTBD11A6QL63 1104 aa15.7■□□□□ 0.1
VPS13D-204ENST00000469054 HMGB2P26583 209 aaKnown RBP15.7■□□□□ 0.1
VPS13D-204ENST00000469054 TAF7Q15545 349 aaPredicted RBP15.7■□□□□ 0.1
VPS13D-204ENST00000469054 RBM42Q9BTD8 480 aaKnown RBP15.7■□□□□ 0.1
VPS13D-204ENST00000469054 PTCD1O75127 700 aaKnown RBP15.69■□□□□ 0.1
VPS13D-204ENST00000469054 ATP6V1AP38606 617 aa15.69■□□□□ 0.1
VPS13D-204ENST00000469054 ZNF790Q6PG37 636 aa15.69■□□□□ 0.1
VPS13D-204ENST00000469054 TTC5Q8N0Z6 440 aa15.69■□□□□ 0.1
VPS13D-204ENST00000469054 SCN11AQ9UI33 1791 aa15.69■□□□□ 0.1
VPS13D-204ENST00000469054 ITGB4P16144 1822 aa15.68■□□□□ 0.1
VPS13D-204ENST00000469054 RGPD3A6NKT7 1758 aaPredicted RBP15.68■□□□□ 0.1
VPS13D-204ENST00000469054 RGPD4Q7Z3J3 1758 aa15.68■□□□□ 0.1
VPS13D-204ENST00000469054 SLC4A9Q96Q91 983 aa15.68■□□□□ 0.1
VPS13D-204ENST00000469054 ANO8Q9HCE9 1232 aaPredicted RBP15.67■□□□□ 0.1
VPS13D-204ENST00000469054 SENP3-EIF4A1A0A087X0R7 540 aa15.66■□□□□ 0.1
VPS13D-204ENST00000469054 DCAF8L1A6NGE4 600 aa15.66■□□□□ 0.1
VPS13D-204ENST00000469054 KCNQ3O43525 872 aa15.66■□□□□ 0.1
VPS13D-204ENST00000469054 ITPK1Q13572 414 aa15.66■□□□□ 0.1
VPS13D-204ENST00000469054 STK32BQ9NY57 414 aa15.66■□□□□ 0.1
VPS13D-204ENST00000469054 MIS18AQ9NYP9 233 aa15.66■□□□□ 0.1
VPS13D-204ENST00000469054 SLC15A2Q16348 729 aa15.65■□□□□ 0.1
VPS13D-204ENST00000469054 CCDC27Q2M243 656 aa15.65■□□□□ 0.1
VPS13D-204ENST00000469054 AKT1S1Q96B36 256 aa15.65■□□□□ 0.1
VPS13D-204ENST00000469054 ZNF496Q96IT1 587 aaPredicted RBP15.65■□□□□ 0.1
VPS13D-204ENST00000469054 RREB1Q92766 1687 aa15.64■□□□□ 0.09
VPS13D-204ENST00000469054 R3HDM1Q15032 1099 aaKnown RBP15.64■□□□□ 0.09
VPS13D-204ENST00000469054 ZNF827Q17R98 1081 aa15.64■□□□□ 0.09
VPS13D-204ENST00000469054 VSIG10Q8N0Z9 540 aa15.64■□□□□ 0.09
VPS13D-204ENST00000469054 LINC00116Q8NCU8 138 aa15.64■□□□□ 0.09
VPS13D-204ENST00000469054 FMNL2Q96PY5 1086 aa15.64■□□□□ 0.09
VPS13D-204ENST00000469054 BABAM1Q9NWV8 329 aa15.64■□□□□ 0.09
VPS13D-204ENST00000469054 LY75O60449 1722 aa15.63■□□□□ 0.09
VPS13D-204ENST00000469054 CALD1Q05682 793 aaKnown RBP15.63■□□□□ 0.09
VPS13D-204ENST00000469054 WWC1Q8IX03 1113 aa15.63■□□□□ 0.09
VPS13D-204ENST00000469054 PSDA5PKW4 1024 aaPredicted RBP15.62■□□□□ 0.09
VPS13D-204ENST00000469054 DNAJC10Q8IXB1 793 aa15.62■□□□□ 0.09
VPS13D-204ENST00000469054 NGEFQ8N5V2 710 aa15.62■□□□□ 0.09
VPS13D-204ENST00000469054 TSPYL4Q9UJ04 414 aa15.62■□□□□ 0.09
VPS13D-204ENST00000469054 SALL2Q9Y467 1007 aaPredicted RBP15.62■□□□□ 0.09
VPS13D-204ENST00000469054 HEG1Q9ULI3 1381 aa15.62■□□□□ 0.09
VPS13D-204ENST00000469054 NUP188Q5SRE5 1749 aa15.61■□□□□ 0.09
VPS13D-204ENST00000469054 CHL1O00533 1208 aa15.61■□□□□ 0.09
VPS13D-204ENST00000469054 CFAP44Q96MT7 982 aa15.61■□□□□ 0.09
VPS13D-204ENST00000469054 TFCP2L1Q9NZI6 479 aa15.61■□□□□ 0.09
VPS13D-204ENST00000469054 LAS1LQ9Y4W2 734 aaKnown RBP15.61■□□□□ 0.09
VPS13D-204ENST00000469054 KCPQ6ZWJ8 1503 aa15.61■□□□□ 0.09
VPS13D-204ENST00000469054 DLG5Q8TDM6 1919 aa15.6■□□□□ 0.09
VPS13D-204ENST00000469054 EIF4A1P60842 406 aaKnown RBP15.6■□□□□ 0.09
VPS13D-204ENST00000469054 RC3H1Q5TC82 1133 aaKnown RBP15.6■□□□□ 0.09
VPS13D-204ENST00000469054 AK7Q96M32 723 aa15.6■□□□□ 0.09
VPS13D-204ENST00000469054 TEX13AQ9BXU3 409 aaPredicted RBP15.6■□□□□ 0.09
VPS13D-204ENST00000469054 PAPPAQ13219 1627 aa15.59■□□□□ 0.09
VPS13D-204ENST00000469054 STARD3NLO95772 234 aa15.59■□□□□ 0.09
VPS13D-204ENST00000469054 SNRPA1P09661 255 aaKnown RBP15.59■□□□□ 0.09
VPS13D-204ENST00000469054 ZNF853P0CG23 659 aa15.59■□□□□ 0.09
VPS13D-204ENST00000469054 CYP19A1P11511 503 aaPredicted RBP15.59■□□□□ 0.09
VPS13D-204ENST00000469054 IFT57Q9NWB7 429 aa15.59■□□□□ 0.09
VPS13D-204ENST00000469054 CNTNAP4Q9C0A0 1308 aa15.59■□□□□ 0.09
VPS13D-204ENST00000469054 SIPA1L3O60292 1781 aaPredicted RBP15.59■□□□□ 0.09
VPS13D-204ENST00000469054 CRKLP46109 303 aaKnown RBP15.58■□□□□ 0.08
VPS13D-204ENST00000469054 GNAI1P63096 354 aa15.58■□□□□ 0.08
VPS13D-204ENST00000469054 PRAMEF22A3QJZ6 481 aa15.57■□□□□ 0.08
VPS13D-204ENST00000469054 GNPATO15228 680 aa15.57■□□□□ 0.08
VPS13D-204ENST00000469054 GIGYF1O75420 1035 aaPredicted RBP15.57■□□□□ 0.08
VPS13D-204ENST00000469054 WDR63Q8IWG1 891 aa15.57■□□□□ 0.08
VPS13D-204ENST00000469054 MBIPQ9NS73 344 aa15.57■□□□□ 0.08
VPS13D-204ENST00000469054 USP16Q9Y5T5 823 aa15.57■□□□□ 0.08
VPS13D-204ENST00000469054 VIRMAQ69YN4 1812 aaKnown RBP15.57■□□□□ 0.08
VPS13D-204ENST00000469054 RPS6KA4O75676 772 aa15.56■□□□□ 0.08
VPS13D-204ENST00000469054 SSFA2P28290 1259 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms