RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 PLCB2Q00722 1185 aa9.6□□□□□ -0.87
CLDN4-204ENST00000466411 TNRC6CQ9HCJ0 1690 aaKnown RBP9.6□□□□□ -0.87
CLDN4-204ENST00000466411 SBF1O95248 1867 aa9.59□□□□□ -0.87
CLDN4-204ENST00000466411 NLRP6P59044 892 aa9.59□□□□□ -0.87
CLDN4-204ENST00000466411 C9orf131Q5VYM1 1079 aa9.59□□□□□ -0.87
CLDN4-204ENST00000466411 FAM212AQ96EL1 285 aa9.59□□□□□ -0.87
CLDN4-204ENST00000466411 N4BP2Q86UW6 1770 aaPredicted RBP9.59□□□□□ -0.87
CLDN4-204ENST00000466411 MON2Q7Z3U7 1717 aa9.59□□□□□ -0.87
CLDN4-204ENST00000466411 TAF1LQ8IZX4 1826 aa9.59□□□□□ -0.88
CLDN4-204ENST00000466411 CTCFP49711 727 aaPredicted RBP9.58□□□□□ -0.88
CLDN4-204ENST00000466411 DCAF8Q5TAQ9 597 aa9.58□□□□□ -0.88
CLDN4-204ENST00000466411 RNF25Q96BH1 459 aaPredicted RBP9.58□□□□□ -0.88
CLDN4-204ENST00000466411 TESK2Q96S53 571 aa9.58□□□□□ -0.88
CLDN4-204ENST00000466411 TERF2IPQ9NYB0 399 aa9.58□□□□□ -0.88
CLDN4-204ENST00000466411 TOGARAM1Q9Y4F4 1720 aa9.58□□□□□ -0.88
CLDN4-204ENST00000466411 PLEKHG2Q9H7P9 1386 aa9.58□□□□□ -0.88
CLDN4-204ENST00000466411 IL2RBP14784 551 aa9.57□□□□□ -0.88
CLDN4-204ENST00000466411 PRIM1P49642 420 aaKnown RBP9.57□□□□□ -0.88
CLDN4-204ENST00000466411 ARHGAP27Q6ZUM4 889 aa9.57□□□□□ -0.88
CLDN4-204ENST00000466411 SMIM5Q71RC9 77 aa9.57□□□□□ -0.88
CLDN4-204ENST00000466411 WBP1LQ9NX94 342 aa9.57□□□□□ -0.88
CLDN4-204ENST00000466411 CCNL1Q9UK58 526 aaPredicted RBP9.57□□□□□ -0.88
CLDN4-204ENST00000466411 KDM2BQ8NHM5 1336 aa9.56□□□□□ -0.88
CLDN4-204ENST00000466411 VIRMAQ69YN4 1812 aaKnown RBP9.56□□□□□ -0.88
CLDN4-204ENST00000466411 ANKRD36BQ8N2N9 1353 aa9.56□□□□□ -0.88
CLDN4-204ENST00000466411 LBX1P52954 281 aa9.56□□□□□ -0.88
CLDN4-204ENST00000466411 HDGFL2Q7Z4V5 671 aaPredicted RBP9.56□□□□□ -0.88
CLDN4-204ENST00000466411 FLAD1Q8NFF5 587 aa9.56□□□□□ -0.88
CLDN4-204ENST00000466411 BCS1LQ9Y276 419 aa9.56□□□□□ -0.88
CLDN4-204ENST00000466411 ARFGEF1Q9Y6D6 1849 aa9.56□□□□□ -0.88
CLDN4-204ENST00000466411 UBR3Q6ZT12 1888 aa9.55□□□□□ -0.88
CLDN4-204ENST00000466411 C5P01031 1676 aa9.55□□□□□ -0.88
CLDN4-204ENST00000466411 CSB-PGBD3P0DP91 1061 aa9.55□□□□□ -0.88
CLDN4-204ENST00000466411 HSPA5P11021 654 aaKnown RBP9.55□□□□□ -0.88
CLDN4-204ENST00000466411 KCNA3P22001 575 aa9.55□□□□□ -0.88
CLDN4-204ENST00000466411 EDC4Q6P2E9 1401 aaKnown RBP9.55□□□□□ -0.88
CLDN4-204ENST00000466411 TTC21AQ8NDW8 1320 aa9.55□□□□□ -0.88
CLDN4-204ENST00000466411 A0A0G2JLW4 131 aa9.54□□□□□ -0.88
CLDN4-204ENST00000466411 POTECB2RU33 542 aa9.54□□□□□ -0.88
CLDN4-204ENST00000466411 FXR2P51116 673 aaKnown RBP eCLIP9.54□□□□□ -0.88
CLDN4-204ENST00000466411 TGFB2P61812 414 aa9.54□□□□□ -0.88
CLDN4-204ENST00000466411 CABP2Q9NPB3 220 aa9.54□□□□□ -0.88
CLDN4-204ENST00000466411 MKRN1Q9UHC7 482 aaKnown RBP9.54□□□□□ -0.88
CLDN4-204ENST00000466411 NFAT5O94916 1531 aa9.54□□□□□ -0.88
CLDN4-204ENST00000466411 CNTNAP1P78357 1384 aa9.53□□□□□ -0.88
CLDN4-204ENST00000466411 KTN1Q86UP2 1357 aaKnown RBP9.53□□□□□ -0.88
CLDN4-204ENST00000466411 CCDC85CA6NKD9 419 aa9.53□□□□□ -0.88
CLDN4-204ENST00000466411 HSPA8P11142 646 aaKnown RBP9.53□□□□□ -0.88
CLDN4-204ENST00000466411 PRKAR2AP13861 404 aaKnown RBP9.53□□□□□ -0.88
CLDN4-204ENST00000466411 FARP1Q9Y4F1 1045 aaPredicted RBP9.53□□□□□ -0.88
CLDN4-204ENST00000466411 DOT1LQ8TEK3 1739 aa9.53□□□□□ -0.88
CLDN4-204ENST00000466411 KIF20BQ96Q89 1820 aa9.52□□□□□ -0.89
CLDN4-204ENST00000466411 CHRDL2Q6WN34 429 aa9.52□□□□□ -0.89
CLDN4-204ENST00000466411 CABP1Q9NZU7 370 aa9.52□□□□□ -0.89
CLDN4-204ENST00000466411 VEGFAP15692 232 aaPredicted RBP9.51□□□□□ -0.89
CLDN4-204ENST00000466411 KCNH5Q8NCM2 988 aa9.51□□□□□ -0.89
CLDN4-204ENST00000466411 DDX54Q8TDD1 881 aaKnown RBP9.51□□□□□ -0.89
CLDN4-204ENST00000466411 TMC1Q8TDI8 760 aa9.51□□□□□ -0.89
CLDN4-204ENST00000466411 BBXQ8WY36 941 aaPredicted RBP9.51□□□□□ -0.89
CLDN4-204ENST00000466411 C4BP0C0L5 1744 aa9.51□□□□□ -0.89
CLDN4-204ENST00000466411 ANKRD26Q9UPS8 1709 aa9.51□□□□□ -0.89
CLDN4-204ENST00000466411 KDM6AO15550 1401 aaPredicted RBP9.5□□□□□ -0.89
CLDN4-204ENST00000466411 FCHSD2O94868 740 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 DPEP1P16444 411 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 VEGFBP49765 207 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 SYTL4Q96C24 671 aaPredicted RBP9.5□□□□□ -0.89
CLDN4-204ENST00000466411 DCAF5Q96JK2 942 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 NLRP2Q9NX02 1062 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 RNF181Q9P0P0 153 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 A0A1W2PP64 1363 aa9.5□□□□□ -0.89
CLDN4-204ENST00000466411 CD163L1Q9NR16 1453 aa9.49□□□□□ -0.89
CLDN4-204ENST00000466411 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.49□□□□□ -0.89
CLDN4-204ENST00000466411 GLTPD2A6NH11 291 aa9.49□□□□□ -0.89
CLDN4-204ENST00000466411 MMP10P09238 476 aa9.48□□□□□ -0.89
CLDN4-204ENST00000466411 PIP4P2Q8N4L2 257 aa9.48□□□□□ -0.89
CLDN4-204ENST00000466411 CGNL1Q0VF96 1302 aa9.48□□□□□ -0.89
CLDN4-204ENST00000466411 NSD3Q9BZ95 1437 aa9.48□□□□□ -0.89
CLDN4-204ENST00000466411 RIOK3O14730 519 aaKnown RBP9.47□□□□□ -0.89
CLDN4-204ENST00000466411 PYGBP11216 843 aa9.47□□□□□ -0.89
CLDN4-204ENST00000466411 CHRM1P11229 460 aaPredicted RBP9.47□□□□□ -0.89
CLDN4-204ENST00000466411 AIDAQ96BJ3 306 aa9.47□□□□□ -0.89
CLDN4-204ENST00000466411 KIF7Q2M1P5 1343 aa9.47□□□□□ -0.89
CLDN4-204ENST00000466411 ZC3H4Q9UPT8 1303 aaKnown RBP9.47□□□□□ -0.89
CLDN4-204ENST00000466411 USP31Q70CQ4 1352 aa9.47□□□□□ -0.89
CLDN4-204ENST00000466411 SOX12O15370 315 aa9.46□□□□□ -0.9
CLDN4-204ENST00000466411 SSFA2P28290 1259 aa9.46□□□□□ -0.9
CLDN4-204ENST00000466411 HS6ST3Q8IZP7 471 aa9.46□□□□□ -0.9
CLDN4-204ENST00000466411 SLC12A5Q9H2X9 1139 aa9.46□□□□□ -0.9
CLDN4-204ENST00000466411 MAP2P11137 1827 aaKnown RBP9.46□□□□□ -0.9
CLDN4-204ENST00000466411 TTC21BQ7Z4L5 1316 aa9.46□□□□□ -0.9
CLDN4-204ENST00000466411 PASKQ96RG2 1323 aa9.46□□□□□ -0.9
CLDN4-204ENST00000466411 CCDC88AQ3V6T2 1871 aa9.45□□□□□ -0.9
CLDN4-204ENST00000466411 TSPYL2Q9H2G4 693 aaPredicted RBP9.45□□□□□ -0.9
CLDN4-204ENST00000466411 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.45□□□□□ -0.9
CLDN4-204ENST00000466411 WASHC2AQ641Q2 1341 aa9.45□□□□□ -0.9
CLDN4-204ENST00000466411 PHF14O94880 888 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 POTEIP0CG38 1075 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 POTEJP0CG39 1038 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 PRPF38BQ5VTL8 546 aaKnown RBP9.44□□□□□ -0.9
CLDN4-204ENST00000466411 ANKRD24Q8TF21 1146 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms