RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 MBIPQ9NS73 344 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 NLRP2Q9NX02 1062 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 RTL1A6NKG5 1358 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 THUMPD2Q9BTF0 503 aaKnown RBP7.48□□□□□ -1.21
VPS13D-202ENST00000460333 ZNF330Q9Y3S2 320 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-202ENST00000460333 TATP17735 454 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-202ENST00000460333 GTF2E1P29083 439 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-202ENST00000460333 FGD1P98174 961 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 KLHL34Q8N239 644 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 MCM5P33992 734 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 ZNF530Q6P9A1 599 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-202ENST00000460333 SASS6Q6UVJ0 657 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 SOS1Q07889 1333 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-202ENST00000460333 SLC4A10Q6U841 1118 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 MCM10Q7L590 875 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 SPG7Q9UQ90 795 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 ADGRB2O60241 1585 aa7.48□□□□□ -1.21
VPS13D-202ENST00000460333 REC8O95072 547 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 XPCQ01831 940 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-202ENST00000460333 TAF7Q15545 349 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-202ENST00000460333 EYA1Q99502 592 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 BABAM1Q9NWV8 329 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 GOLGA6L19H0YKK7 550 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 AEBP1Q8IUX7 1158 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 TRIM27P14373 513 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 CAVIN1Q6NZI2 390 aaKnown RBP7.47□□□□□ -1.21
VPS13D-202ENST00000460333 GCC1Q96CN9 775 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 PTPRCP08575 1304 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 ANKRD26Q9UPS8 1709 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 DYNC1I1O14576 645 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 CCT4P50991 539 aaKnown RBP7.47□□□□□ -1.21
VPS13D-202ENST00000460333 PDE4CQ08493 712 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 ACBD3Q9H3P7 528 aa7.47□□□□□ -1.21
VPS13D-202ENST00000460333 NRXN3Q9Y4C0 1643 aa7.46□□□□□ -1.21
VPS13D-202ENST00000460333 GCP02774 474 aa7.46□□□□□ -1.21
VPS13D-202ENST00000460333 DCTN1Q14203 1278 aa7.46□□□□□ -1.21
VPS13D-202ENST00000460333 MCTP1Q6DN14 999 aa7.46□□□□□ -1.21
VPS13D-202ENST00000460333 FKBP5Q13451 457 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-202ENST00000460333 TMEM57Q8N5G2 664 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 TSPY26PQ9H489 355 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 IQSEC2Q5JU85 1478 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 OVOS2A0A0J9YW53 1432 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 OVOS2Q6IE36 1432 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 SLC4A2P04920 1241 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 VAMP4O75379 141 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 TTC5Q8N0Z6 440 aa7.46□□□□□ -1.22
VPS13D-202ENST00000460333 G3V3G9 751 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 DDX58O95786 925 aaKnown RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 GNAI3P08754 354 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 DHX8Q14562 1220 aaKnown RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 MTHFSDQ2M296 383 aaKnown RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 DCAF8Q5TAQ9 597 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 CHMP4CQ96CF2 233 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 FAM83GA6ND36 823 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 ANKRD24Q8TF21 1146 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 SYTL4Q96C24 671 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 NGLY1Q96IV0 654 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 CWC22Q9HCG8 908 aaKnown RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 MAP3K5Q99683 1374 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 ZC3H6P61129 1189 aaKnown RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 OS9Q13438 667 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 MRPL50Q8N5N7 158 aaKnown RBP7.45□□□□□ -1.22
VPS13D-202ENST00000460333 ORAI2Q96SN7 254 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 ANKRD45Q5TZF3 282 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 CCDC34Q96HJ3 373 aa7.45□□□□□ -1.22
VPS13D-202ENST00000460333 IGSF1Q8N6C5 1336 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 COL3A1P02461 1466 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-202ENST00000460333 CHL1O00533 1208 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 HSPA2P54652 639 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 HDGFL1Q5TGJ6 251 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 PDZRN3Q9UPQ7 1066 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 KIAA0232Q92628 1395 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 EIF2S2P20042 333 aaKnown RBP7.44□□□□□ -1.22
VPS13D-202ENST00000460333 BRPF1P55201 1214 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-202ENST00000460333 AKAP4Q5JQC9 854 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 RNF20Q5VTR2 975 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 PRDM11Q9NQV5 511 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 HDAC1Q13547 482 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-202ENST00000460333 RPAP2Q8IXW5 612 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-202ENST00000460333 CALCOCO1Q9P1Z2 691 aa7.44□□□□□ -1.22
VPS13D-202ENST00000460333 LRRC7Q96NW7 1537 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 TMEM94Q12767 1356 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 BTBD11A6QL63 1104 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 BECN2A8MW95 431 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 FAM184AQ8NB25 1140 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 ZNF592Q92610 1267 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 MCM2P49736 904 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 RABEP1Q15276 862 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 INTS3Q68E01 1043 aaKnown RBP7.43□□□□□ -1.22
VPS13D-202ENST00000460333 SMAP1Q8IYB5 467 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-202ENST00000460333 GTPBP4Q9BZE4 634 aaKnown RBP7.43□□□□□ -1.22
VPS13D-202ENST00000460333 NCOA3Q9Y6Q9 1424 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 CCP110O43303 1012 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 USHBP1Q8N6Y0 703 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 C8orf58Q8NAV2 365 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 AK7Q96M32 723 aa7.43□□□□□ -1.22
VPS13D-202ENST00000460333 SETD1AO15047 1707 aaKnown RBP7.42□□□□□ -1.22
VPS13D-202ENST00000460333 CDC45O75419 566 aa7.42□□□□□ -1.22
VPS13D-202ENST00000460333 ZNF853P0CG23 659 aa7.42□□□□□ -1.22
VPS13D-202ENST00000460333 NEXNQ0ZGT2 675 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms