RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 NUTM1Q86Y26 1132 aa18.84■□□□□ 0.61
LMNB1-203ENST00000460265 CDK12Q9NYV4 1490 aaPredicted RBP18.84■□□□□ 0.61
LMNB1-203ENST00000460265 PLEKHO1Q53GL0 409 aaPredicted RBP18.83■□□□□ 0.61
LMNB1-203ENST00000460265 SDSP20132 328 aa18.83■□□□□ 0.6
LMNB1-203ENST00000460265 DDX17Q92841 729 aaKnown RBP18.83■□□□□ 0.6
LMNB1-203ENST00000460265 SBNO1A3KN83 1393 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 PDE4CQ08493 712 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 LRRCC1Q9C099 1032 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 ATF3P18847 181 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 GBP4Q96PP9 640 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 SRGAP3O43295 1099 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 SRCIN1Q9C0H9 1055 aa18.82■□□□□ 0.6
LMNB1-203ENST00000460265 SPATA31D1Q6ZQQ2 1576 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 RAPGEF4Q8WZA2 1011 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 PIK3R4Q99570 1358 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 PI4KAP2A4QPH2 592 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 KCNQ3O43525 872 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 TTC22Q5TAA0 569 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 PI4KAP1Q8N8J0 262 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 CABLES1Q8TDN4 633 aa18.81■□□□□ 0.6
LMNB1-203ENST00000460265 REC8O95072 547 aa18.8■□□□□ 0.6
LMNB1-203ENST00000460265 PTPRUQ92729 1446 aa18.8■□□□□ 0.6
LMNB1-203ENST00000460265 MYL6BP14649 208 aa18.8■□□□□ 0.6
LMNB1-203ENST00000460265 ST18O60284 1047 aa18.8■□□□□ 0.6
LMNB1-203ENST00000460265 GSPT1P15170 499 aaKnown RBP18.8■□□□□ 0.6
LMNB1-203ENST00000460265 ANP32BQ92688 251 aaKnown RBP18.8■□□□□ 0.6
LMNB1-203ENST00000460265 CHPF2Q9P2E5 772 aa18.8■□□□□ 0.6
LMNB1-203ENST00000460265 ANTXR1Q9H6X2 564 aa18.79■□□□□ 0.6
LMNB1-203ENST00000460265 GCP02774 474 aa18.79■□□□□ 0.6
LMNB1-203ENST00000460265 KCNJ4P48050 445 aa18.79■□□□□ 0.6
LMNB1-203ENST00000460265 NEK4P51957 841 aa18.79■□□□□ 0.6
LMNB1-203ENST00000460265 MSNP26038 577 aaKnown RBP18.79■□□□□ 0.6
LMNB1-203ENST00000460265 BRPF1P55201 1214 aaPredicted RBP18.79■□□□□ 0.6
LMNB1-203ENST00000460265 KRT28Q7Z3Y7 464 aa18.79■□□□□ 0.6
LMNB1-203ENST00000460265 PNMA6EA0A0J9YXQ4 647 aa18.78■□□□□ 0.6
LMNB1-203ENST00000460265 K7ELQ4 463 aaPredicted RBP18.78■□□□□ 0.6
LMNB1-203ENST00000460265 MCCP23508 829 aa18.78■□□□□ 0.6
LMNB1-203ENST00000460265 CHRNA2Q15822 529 aa18.78■□□□□ 0.6
LMNB1-203ENST00000460265 KCNH5Q8NCM2 988 aa18.78■□□□□ 0.6
LMNB1-203ENST00000460265 ZHX1Q9UKY1 873 aaPredicted RBP18.78■□□□□ 0.6
LMNB1-203ENST00000460265 USP32Q8NFA0 1604 aa18.77■□□□□ 0.6
LMNB1-203ENST00000460265 ANKRD24Q8TF21 1146 aa18.77■□□□□ 0.6
LMNB1-203ENST00000460265 DLC1Q96QB1 1528 aa18.77■□□□□ 0.6
LMNB1-203ENST00000460265 PIP4K2AP48426 406 aaPredicted RBP18.77■□□□□ 0.59
LMNB1-203ENST00000460265 SLC39A6Q13433 755 aa18.77■□□□□ 0.59
LMNB1-203ENST00000460265 CHMP3Q9Y3E7 222 aa18.77■□□□□ 0.59
LMNB1-203ENST00000460265 PPP1R42Q7Z4L9 355 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 IP6K1Q92551 441 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 SIL1Q9H173 461 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 R3HCC1Q9Y3T6 440 aaKnown RBP18.75■□□□□ 0.59
LMNB1-203ENST00000460265 CD2BP2O95400 341 aaKnown RBP18.75■□□□□ 0.59
LMNB1-203ENST00000460265 RIC3Q7Z5B4 369 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 JARID2Q92833 1246 aaPredicted RBP18.75■□□□□ 0.59
LMNB1-203ENST00000460265 ERC2O15083 957 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 MX1P20591 662 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 PDE1AP54750 535 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 MAP7D2Q96T17 732 aa18.75■□□□□ 0.59
LMNB1-203ENST00000460265 DDX49Q9Y6V7 483 aaKnown RBP18.75■□□□□ 0.59
LMNB1-203ENST00000460265 IGSF1Q8N6C5 1336 aa18.74■□□□□ 0.59
LMNB1-203ENST00000460265 PRDM10Q9NQV6 1147 aa18.74■□□□□ 0.59
LMNB1-203ENST00000460265 RTL1A6NKG5 1358 aa18.74■□□□□ 0.59
LMNB1-203ENST00000460265 UPF3BQ9BZI7 483 aaKnown RBP18.74■□□□□ 0.59
LMNB1-203ENST00000460265 TNPO1Q92973 898 aaKnown RBP18.73■□□□□ 0.59
LMNB1-203ENST00000460265 MAP3K5Q99683 1374 aa18.73■□□□□ 0.59
LMNB1-203ENST00000460265 ADGRB2O60241 1585 aa18.73■□□□□ 0.59
LMNB1-203ENST00000460265 MCTP1Q6DN14 999 aa18.73■□□□□ 0.59
LMNB1-203ENST00000460265 DDX11L8A8MPP1 907 aa18.72■□□□□ 0.59
LMNB1-203ENST00000460265 RABEP1Q15276 862 aa18.72■□□□□ 0.59
LMNB1-203ENST00000460265 CDC42BPGQ6DT37 1551 aa18.72■□□□□ 0.59
LMNB1-203ENST00000460265 SSFA2P28290 1259 aa18.72■□□□□ 0.59
LMNB1-203ENST00000460265 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.72■□□□□ 0.59
LMNB1-203ENST00000460265 DNAAF4Q8WXU2 420 aa18.72■□□□□ 0.59
LMNB1-203ENST00000460265 TTC5Q8N0Z6 440 aa18.72■□□□□ 0.59
LMNB1-203ENST00000460265 ARHGEF10O15013 1369 aa18.71■□□□□ 0.59
LMNB1-203ENST00000460265 RBM25P49756 843 aaKnown RBP18.71■□□□□ 0.59
LMNB1-203ENST00000460265 LARP6Q9BRS8 491 aaKnown RBP18.71■□□□□ 0.59
LMNB1-203ENST00000460265 NBPF7P0C2Y1 421 aaPredicted RBP18.71■□□□□ 0.59
LMNB1-203ENST00000460265 KIAA0232Q92628 1395 aa18.71■□□□□ 0.58
LMNB1-203ENST00000460265 HSPA2P54652 639 aa18.7■□□□□ 0.58
LMNB1-203ENST00000460265 PTCH1Q13635 1447 aa18.7■□□□□ 0.58
LMNB1-203ENST00000460265 IFIT2P09913 472 aaKnown RBP18.7■□□□□ 0.58
LMNB1-203ENST00000460265 MAP3K2Q9Y2U5 619 aa18.7■□□□□ 0.58
LMNB1-203ENST00000460265 CWF19L2Q2TBE0 894 aaKnown RBP18.69■□□□□ 0.58
LMNB1-203ENST00000460265 ATP8B2P98198 1209 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 DDX54Q8TDD1 881 aaKnown RBP18.69■□□□□ 0.58
LMNB1-203ENST00000460265 CHMP4AQ9BY43 222 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 ISY1Q9ULR0 285 aaKnown RBP18.69■□□□□ 0.58
LMNB1-203ENST00000460265 KIF20BQ96Q89 1820 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 PRAMEF22A3QJZ6 481 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 USP44Q9H0E7 712 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 OVOS2A0A0J9YW53 1432 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 TECPR2O15040 1411 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 OVOS2Q6IE36 1432 aa18.69■□□□□ 0.58
LMNB1-203ENST00000460265 HTATSF1O43719 755 aaKnown RBP18.68■□□□□ 0.58
LMNB1-203ENST00000460265 CWC27Q6UX04 472 aaKnown RBP18.68■□□□□ 0.58
LMNB1-203ENST00000460265 ZSCAN30Q86W11 494 aa18.68■□□□□ 0.58
LMNB1-203ENST00000460265 NEXNQ0ZGT2 675 aa18.68■□□□□ 0.58
LMNB1-203ENST00000460265 CLASRPQ8N2M8 674 aaKnown RBP18.68■□□□□ 0.58
LMNB1-203ENST00000460265 DIAPH3Q9NSV4 1193 aa18.68■□□□□ 0.58
LMNB1-203ENST00000460265 OFD1O75665 1012 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms