RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DDX11L8A8MPP1 907 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 C8orf58Q8NAV2 365 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 TRMT112Q9UI30 125 aaKnown RBP8.93□□□□□ -0.98
SYNE1-213ENST00000448038 SBNO1A3KN83 1393 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 TET3O43151 1660 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 MYOM2P54296 1465 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 GPTP24298 496 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 NLRP1Q9C000 1473 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 NUTM1Q86Y26 1132 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 ACSBG1Q96GR2 724 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 BTG4Q9NY30 223 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 CDC42BPBQ9Y5S2 1711 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 ABCA9Q8IUA7 1624 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 SBNO2Q9Y2G9 1366 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 IL13P35225 146 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 METTL24Q5JXM2 366 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 CHPF2Q9P2E5 772 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 PLA2R1Q13018 1463 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 ATP5J2-PTCD1G3V325 749 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 RAB11FIP3O75154 756 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 CLSTN1O94985 981 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 NFATC2IPQ8NCF5 419 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 MAP3K5Q99683 1374 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 NPHP4O75161 1426 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-213ENST00000448038 SMARCA5O60264 1052 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-213ENST00000448038 NEK4P51957 841 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 CHMP5Q9NZZ3 219 aa8.92□□□□□ -0.98
SYNE1-213ENST00000448038 VPS37CA5D8V6 355 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-213ENST00000448038 ANKRD13DQ6ZTN6 518 aa8.91□□□□□ -0.98
SYNE1-213ENST00000448038 DDX49Q9Y6V7 483 aaKnown RBP8.91□□□□□ -0.98
SYNE1-213ENST00000448038 IQGAP3Q86VI3 1631 aa8.91□□□□□ -0.98
SYNE1-213ENST00000448038 IFIT5Q13325 482 aaKnown RBP8.91□□□□□ -0.98
SYNE1-213ENST00000448038 KDM5AP29375 1690 aaKnown RBP8.91□□□□□ -0.98
SYNE1-213ENST00000448038 ARHGAP45Q92619 1136 aa8.91□□□□□ -0.98
SYNE1-213ENST00000448038 DCAF5Q96JK2 942 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 CWC25Q9NXE8 425 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-213ENST00000448038 CTDP1Q9Y5B0 961 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-213ENST00000448038 ARHGAP31Q2M1Z3 1444 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 ZSCAN25Q6NSZ9 544 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 AK7Q96M32 723 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 BACH2Q9BYV9 841 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 SPINK5Q9NQ38 1064 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-213ENST00000448038 AKAP2Q9Y2D5 859 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 PHF14O94880 888 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 MX1P20591 662 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 ARHGEF10O15013 1369 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 TMEM94Q12767 1356 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 SART3Q15020 963 aaKnown RBP8.9□□□□□ -0.98
SYNE1-213ENST00000448038 UBE3BQ7Z3V4 1068 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 XAGE3Q8WTP9 111 aa8.9□□□□□ -0.98
SYNE1-213ENST00000448038 RIMBP3CA6NJZ7 1639 aa8.9□□□□□ -0.99
SYNE1-213ENST00000448038 RIMBP3BA6NNM3 1639 aa8.9□□□□□ -0.99
SYNE1-213ENST00000448038 RIMBP3Q9UFD9 1639 aa8.9□□□□□ -0.99
SYNE1-213ENST00000448038 DEKP35659 375 aaKnown RBP8.9□□□□□ -0.99
SYNE1-213ENST00000448038 FOSBP53539 338 aa8.9□□□□□ -0.99
SYNE1-213ENST00000448038 RABEP1Q15276 862 aa8.9□□□□□ -0.99
SYNE1-213ENST00000448038 RRP12Q5JTH9 1297 aaKnown RBP8.9□□□□□ -0.99
SYNE1-213ENST00000448038 CWC27Q6UX04 472 aaKnown RBP8.9□□□□□ -0.99
SYNE1-213ENST00000448038 COPS6Q7L5N1 327 aa8.9□□□□□ -0.99
SYNE1-213ENST00000448038 RNMTO43148 476 aaKnown RBP8.89□□□□□ -0.99
SYNE1-213ENST00000448038 TPM4P67936 248 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 NUCB2P80303 420 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 TSPYL6Q8N831 410 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 GOLGA6L3A6NEY3 463 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 GLRX3O76003 335 aaKnown RBP8.89□□□□□ -0.99
SYNE1-213ENST00000448038 ATP6V1AP38606 617 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 KRT24Q2M2I5 525 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 MRPL50Q8N5N7 158 aaKnown RBP8.89□□□□□ -0.99
SYNE1-213ENST00000448038 ROBO2Q9HCK4 1378 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 SLC3A2P08195 630 aaKnown RBP8.89□□□□□ -0.99
SYNE1-213ENST00000448038 PCDH11XQ9BZA7 1347 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 PCDH11YQ9BZA8 1340 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 MTMR7Q9Y216 660 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 ANKRD18BA2A2Z9 1011 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 VAMP4O75379 141 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 SMARCC1Q92922 1105 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-213ENST00000448038 NACAP1Q9BZK3 213 aa8.89□□□□□ -0.99
SYNE1-213ENST00000448038 IDH1O75874 414 aaKnown RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 LRP2BPQ9P2M1 347 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 IFIT1P09914 478 aaKnown RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 PIP4K2AP48426 406 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 JARID2Q92833 1246 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 RAI14Q9P0K7 980 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 SAMD1Q6SPF0 538 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 CCDC8Q9H0W5 538 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 BOLA2Q9H3K6 86 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 MCM2P49736 904 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 SAFBQ15424 915 aaKnown RBP eCLIP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 PPP1R42Q7Z4L9 355 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 SKAP1Q86WV1 359 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 MSNP26038 577 aaKnown RBP8.88□□□□□ -0.99
SYNE1-213ENST00000448038 RFC4P35249 363 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 MEIS3Q99687 375 aa8.88□□□□□ -0.99
SYNE1-213ENST00000448038 SKOR2Q2VWA4 1001 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-213ENST00000448038 ABCF2Q9UG63 623 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 NBPF6Q5VWK0 638 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 NBPF4Q96M43 638 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 CYP46A1Q9Y6A2 500 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 KDM5CP41229 1560 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms