RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SLC52A2Q9HAB3 445 aa22.34■■□□□ 1.17
COL7A1-202ENST00000422991 RGPD3A6NKT7 1758 aaPredicted RBP22.33■■□□□ 1.17
COL7A1-202ENST00000422991 RGPD4Q7Z3J3 1758 aa22.33■■□□□ 1.17
COL7A1-202ENST00000422991 CABP4P57796 275 aa22.33■■□□□ 1.17
COL7A1-202ENST00000422991 TMOD3Q9NYL9 352 aa22.33■■□□□ 1.17
COL7A1-202ENST00000422991 THUMPD2Q9BTF0 503 aaKnown RBP22.32■■□□□ 1.16
COL7A1-202ENST00000422991 KDM3BQ7LBC6 1761 aa22.31■■□□□ 1.16
COL7A1-202ENST00000422991 EN1Q05925 392 aaPredicted RBP22.31■■□□□ 1.16
COL7A1-202ENST00000422991 TEFQ10587 303 aa22.31■■□□□ 1.16
COL7A1-202ENST00000422991 CCDC27Q2M243 656 aa22.31■■□□□ 1.16
COL7A1-202ENST00000422991 PIGBQ92521 554 aa22.31■■□□□ 1.16
COL7A1-202ENST00000422991 UBR2Q8IWV8 1755 aa22.3■■□□□ 1.16
COL7A1-202ENST00000422991 NGEFQ8N5V2 710 aa22.3■■□□□ 1.16
COL7A1-202ENST00000422991 NFATC2IPQ8NCF5 419 aa22.3■■□□□ 1.16
COL7A1-202ENST00000422991 LY75O60449 1722 aa22.3■■□□□ 1.16
COL7A1-202ENST00000422991 APBA3O96018 575 aa22.29■■□□□ 1.16
COL7A1-202ENST00000422991 WWC1Q8IX03 1113 aa22.27■■□□□ 1.16
COL7A1-202ENST00000422991 CAMKK2Q96RR4 588 aa22.26■■□□□ 1.15
COL7A1-202ENST00000422991 SALL2Q9Y467 1007 aaPredicted RBP22.26■■□□□ 1.15
COL7A1-202ENST00000422991 KCPQ6ZWJ8 1503 aa22.25■■□□□ 1.15
COL7A1-202ENST00000422991 SRCAPQ6ZRS2 3230 aa22.25■■□□□ 1.15
COL7A1-202ENST00000422991 TAF7Q15545 349 aaPredicted RBP22.24■■□□□ 1.15
COL7A1-202ENST00000422991 EZH2Q15910 746 aaKnown RBP22.24■■□□□ 1.15
COL7A1-202ENST00000422991 ASAP1Q9ULH1 1129 aa22.24■■□□□ 1.15
COL7A1-202ENST00000422991 ZNF521Q96K83 1311 aa22.24■■□□□ 1.15
COL7A1-202ENST00000422991 PALLDQ8WX93 1383 aa22.24■■□□□ 1.15
COL7A1-202ENST00000422991 CICQ96RK0 1608 aaPredicted RBP22.24■■□□□ 1.15
COL7A1-202ENST00000422991 ZNF831Q5JPB2 1677 aa22.23■■□□□ 1.15
COL7A1-202ENST00000422991 RREB1Q92766 1687 aa22.23■■□□□ 1.15
COL7A1-202ENST00000422991 CALD1Q05682 793 aaKnown RBP22.23■■□□□ 1.15
COL7A1-202ENST00000422991 ATG3Q9NT62 314 aa22.23■■□□□ 1.15
COL7A1-202ENST00000422991 BTBD11A6QL63 1104 aa22.22■■□□□ 1.15
COL7A1-202ENST00000422991 HNRNPUQ00839 825 aaKnown RBP eCLIP22.22■■□□□ 1.15
COL7A1-202ENST00000422991 SMARCC1Q92922 1105 aaPredicted RBP22.21■■□□□ 1.15
COL7A1-202ENST00000422991 IL16Q14005 1332 aa22.21■■□□□ 1.15
COL7A1-202ENST00000422991 PLSCR1O15162 318 aa22.2■■□□□ 1.14
COL7A1-202ENST00000422991 SLC39A6Q13433 755 aa22.2■■□□□ 1.14
COL7A1-202ENST00000422991 WDR63Q8IWG1 891 aa22.2■■□□□ 1.14
COL7A1-202ENST00000422991 TJP1Q07157 1748 aa22.2■■□□□ 1.14
COL7A1-202ENST00000422991 ZNF853P0CG23 659 aa22.19■■□□□ 1.14
COL7A1-202ENST00000422991 ZNF790Q6PG37 636 aa22.19■■□□□ 1.14
COL7A1-202ENST00000422991 IFT57Q9NWB7 429 aa22.19■■□□□ 1.14
COL7A1-202ENST00000422991 BABAM1Q9NWV8 329 aa22.19■■□□□ 1.14
COL7A1-202ENST00000422991 MIS18AQ9NYP9 233 aa22.19■■□□□ 1.14
COL7A1-202ENST00000422991 TAF1LQ8IZX4 1826 aa22.18■■□□□ 1.14
COL7A1-202ENST00000422991 NUP188Q5SRE5 1749 aa22.18■■□□□ 1.14
COL7A1-202ENST00000422991 CHL1O00533 1208 aa22.18■■□□□ 1.14
COL7A1-202ENST00000422991 TTC5Q8N0Z6 440 aa22.18■■□□□ 1.14
COL7A1-202ENST00000422991 CFAP44Q96MT7 982 aa22.18■■□□□ 1.14
COL7A1-202ENST00000422991 C5P01031 1676 aa22.17■■□□□ 1.14
COL7A1-202ENST00000422991 KCNQ3O43525 872 aa22.17■■□□□ 1.14
COL7A1-202ENST00000422991 GNAI1P63096 354 aa22.17■■□□□ 1.14
COL7A1-202ENST00000422991 TSPYL4Q9UJ04 414 aa22.17■■□□□ 1.14
COL7A1-202ENST00000422991 COL5A3P25940 1745 aaPredicted RBP22.17■■□□□ 1.14
COL7A1-202ENST00000422991 LAS1LQ9Y4W2 734 aaKnown RBP22.16■■□□□ 1.14
COL7A1-202ENST00000422991 LAMB4A4D0S4 1761 aa22.15■■□□□ 1.14
COL7A1-202ENST00000422991 ZBED9Q6R2W3 1325 aa22.14■■□□□ 1.14
COL7A1-202ENST00000422991 LOC102724428A0A0B4J2F2 783 aa22.14■■□□□ 1.13
COL7A1-202ENST00000422991 PSDA5PKW4 1024 aaPredicted RBP22.14■■□□□ 1.13
COL7A1-202ENST00000422991 PTCD1O75127 700 aaKnown RBP22.14■■□□□ 1.13
COL7A1-202ENST00000422991 SIK1P57059 783 aa22.14■■□□□ 1.13
COL7A1-202ENST00000422991 MBIPQ9NS73 344 aa22.14■■□□□ 1.13
COL7A1-202ENST00000422991 TXNRD1Q16881 649 aa22.13■■□□□ 1.13
COL7A1-202ENST00000422991 PROM2Q8N271 834 aa22.13■■□□□ 1.13
COL7A1-202ENST00000422991 ZNF496Q96IT1 587 aaPredicted RBP22.13■■□□□ 1.13
COL7A1-202ENST00000422991 SLC4A9Q96Q91 983 aa22.13■■□□□ 1.13
COL7A1-202ENST00000422991 RBM42Q9BTD8 480 aaKnown RBP22.13■■□□□ 1.13
COL7A1-202ENST00000422991 HEG1Q9ULI3 1381 aa22.12■■□□□ 1.13
COL7A1-202ENST00000422991 R3HDM1Q15032 1099 aaKnown RBP22.12■■□□□ 1.13
COL7A1-202ENST00000422991 SLC27A3Q5K4L6 730 aa22.12■■□□□ 1.13
COL7A1-202ENST00000422991 FMNL2Q96PY5 1086 aa22.12■■□□□ 1.13
COL7A1-202ENST00000422991 SPINK5Q9NQ38 1064 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-202ENST00000422991 CCNL1Q9UK58 526 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-202ENST00000422991 EIF4A1P60842 406 aaKnown RBP22.11■■□□□ 1.13
COL7A1-202ENST00000422991 GOLGA2Q08379 1002 aa22.11■■□□□ 1.13
COL7A1-202ENST00000422991 NBPF14Q5TI25 921 aa22.11■■□□□ 1.13
COL7A1-202ENST00000422991 FANCIQ9NVI1 1328 aa22.1■■□□□ 1.13
COL7A1-202ENST00000422991 C4BP0C0L5 1744 aa22.1■■□□□ 1.13
COL7A1-202ENST00000422991 VSIG10Q8N0Z9 540 aa22.1■■□□□ 1.13
COL7A1-202ENST00000422991 TSR2Q969E8 191 aaKnown RBP22.1■■□□□ 1.13
COL7A1-202ENST00000422991 LRRC4BQ9NT99 713 aa22.1■■□□□ 1.13
COL7A1-202ENST00000422991 KCNQ4P56696 695 aa22.09■■□□□ 1.13
COL7A1-202ENST00000422991 E9PSI1 815 aa22.08■■□□□ 1.13
COL7A1-202ENST00000422991 ATP6V1AP38606 617 aa22.08■■□□□ 1.13
COL7A1-202ENST00000422991 ITPK1Q13572 414 aa22.08■■□□□ 1.13
COL7A1-202ENST00000422991 MYH16Q9H6N6 1097 aa22.08■■□□□ 1.13
COL7A1-202ENST00000422991 SLFN5Q08AF3 891 aa22.07■■□□□ 1.12
COL7A1-202ENST00000422991 CDCA7LQ96GN5 454 aa22.07■■□□□ 1.12
COL7A1-202ENST00000422991 LRP5O75197 1615 aa22.06■■□□□ 1.12
COL7A1-202ENST00000422991 GIGYF1O75420 1035 aaPredicted RBP22.05■■□□□ 1.12
COL7A1-202ENST00000422991 SNRPA1P09661 255 aaKnown RBP22.05■■□□□ 1.12
COL7A1-202ENST00000422991 KRT24Q2M2I5 525 aa22.05■■□□□ 1.12
COL7A1-202ENST00000422991 DNAJC10Q8IXB1 793 aa22.05■■□□□ 1.12
COL7A1-202ENST00000422991 LINC00116Q8NCU8 138 aa22.05■■□□□ 1.12
COL7A1-202ENST00000422991 YTHDC1Q96MU7 727 aaKnown RBP22.05■■□□□ 1.12
COL7A1-202ENST00000422991 TUBGCP6Q96RT7 1819 aa22.05■■□□□ 1.12
COL7A1-202ENST00000422991 MYH14Q7Z406 1995 aaKnown RBP22.05■■□□□ 1.12
COL7A1-202ENST00000422991 PRAMEF22A3QJZ6 481 aa22.04■■□□□ 1.12
COL7A1-202ENST00000422991 TRMT2AQ8IZ69 625 aaKnown RBP22.04■■□□□ 1.12
COL7A1-202ENST00000422991 UBR3Q6ZT12 1888 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms