RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-204	ENST00000412568	FMNL2	Q96PY5	1086 aa		13.46	□□□□□ -0.25
PTPRF-204	ENST00000412568	PTPRC	P08575	1304 aa		13.46	□□□□□ -0.26
PTPRF-204	ENST00000412568	RNF214	Q8ND24	703 aa		13.46	□□□□□ -0.26
PTPRF-204	ENST00000412568	NPHP3	Q7Z494	1330 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	ZFYVE16	Q7Z3T8	1539 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	PRPF40A	O75400	957 aa	Known RBP	13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	RRP12	Q5JTH9	1297 aa	Known RBP	13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	MLH3	Q9UHC1	1453 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	MCM4	P33991	863 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	CWF19L2	Q2TBE0	894 aa	Known RBP	13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	NGLY1	Q96IV0	654 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	KIF3A	Q9Y496	699 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568		K7ELQ4	463 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	TTC39A	Q5SRH9	613 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	XAGE3	Q8WTP9	111 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	MSH6	P52701	1360 aa		13.45	□□□□□ -0.26
PTPRF-204	ENST00000412568	NBPF6	Q5VWK0	638 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	RASSF8	Q8NHQ8	419 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	NBPF4	Q96M43	638 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	MPHOSPH8	Q99549	860 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	STARD3NL	O95772	234 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	ZBTB40	Q9NUA8	1239 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	ATP6V1D	Q9Y5K8	247 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	BLM	P54132	1417 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	CCDC158	Q5M9N0	1113 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	SYNE3	Q6ZMZ3	975 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	BICD2	Q8TD16	824 aa		13.44	□□□□□ -0.26
PTPRF-204	ENST00000412568	EXOC5	O00471	708 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	CEBPZ	Q03701	1054 aa	Known RBP	13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	CAVIN1	Q6NZI2	390 aa	Known RBP	13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	KLHL34	Q8N239	644 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	ACSBG1	Q96GR2	724 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	PA2G4	Q9UQ80	394 aa	Known RBP	13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	FIBP	O43427	364 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	IP6K1	Q92551	441 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	JAKMIP1	Q96N16	626 aa	Known RBP	13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	HYPK	Q9NX55	129 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	HDAC1	Q13547	482 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	TBC1D32	Q96NH3	1257 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	LRRIQ1	Q96JM4	1722 aa		13.43	□□□□□ -0.26
PTPRF-204	ENST00000412568	ARHGAP45	Q92619	1136 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	EDC4	Q6P2E9	1401 aa	Known RBP	13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	AKAP17A	Q02040	695 aa	Known RBP	13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	NUCB1	Q02818	461 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	SNRK	Q9NRH2	765 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	PRR36	Q9H6K5	1346 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	ZMYM4	Q5VZL5	1548 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	ATP2B1	P20020	1258 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	AKAP4	Q5JQC9	854 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	CPLX2	Q6PUV4	134 aa	Known RBP	13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	ANKRD13D	Q6ZTN6	518 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	CSPP1	Q1MSJ5	1256 aa		13.42	□□□□□ -0.26
PTPRF-204	ENST00000412568	PLEKHG3	A1L390	1219 aa		13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	IDH1	O75874	414 aa	Known RBP	13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	ZCRB1	Q8TBF4	217 aa	Known RBP	13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	KDM2B	Q8NHM5	1336 aa		13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	ROBO2	Q9HCK4	1378 aa		13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	TRPM2	O94759	1503 aa		13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	SNRPA1	P09661	255 aa	Known RBP	13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	PRPF40B	Q6NWY9	871 aa	Known RBP	13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.41	□□□□□ -0.26
PTPRF-204	ENST00000412568	PPFIA3	O75145	1194 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	SDS	P20132	328 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	ANKRD44	Q8N8A2	993 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	TBC1D2B	Q9UPU7	963 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	GLRX3	O76003	335 aa	Known RBP	13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	PHF14	O94880	888 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	METTL24	Q5JXM2	366 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	CYP46A1	Q9Y6A2	500 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	ZBTB7B	O15156	539 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	BMP2KL	Q5H9B9	411 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	TRMT112	Q9UI30	125 aa	Known RBP	13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	KDM5D	Q9BY66	1539 aa		13.4	□□□□□ -0.26
PTPRF-204	ENST00000412568	NRDC	O43847	1150 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	PSMA5	P28066	241 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	MRE11	P49959	708 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	PIK3R4	Q99570	1358 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	GOLGA6L6	A8MZA4	724 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	CAST	P20810	708 aa	Known RBP	13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	ABCF2	Q9UG63	623 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	KCNQ3	O43525	872 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	DHX16	O60231	1041 aa	Known RBP	13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	RHPN1	Q8TCX5	695 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	ZFYVE9	O95405	1425 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	SBNO2	Q9Y2G9	1366 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	CHL1	O00533	1208 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	MPND	Q8N594	471 aa		13.39	□□□□□ -0.27
PTPRF-204	ENST00000412568	CEP85	Q6P2H3	762 aa		13.38	□□□□□ -0.27
PTPRF-204	ENST00000412568	BCORL1	Q5H9F3	1711 aa		13.38	□□□□□ -0.27
PTPRF-204	ENST00000412568	FERMT3	Q86UX7	667 aa		13.38	□□□□□ -0.27
PTPRF-204	ENST00000412568	NOL10	Q9BSC4	688 aa	Known RBP	13.38	□□□□□ -0.27
PTPRF-204	ENST00000412568	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPRF-204	ENST00000412568	BLOC1S2	Q6QNY1	142 aa		13.38	□□□□□ -0.27
PTPRF-204	ENST00000412568	TTC22	Q5TAA0	569 aa		13.37	□□□□□ -0.27
PTPRF-204	ENST00000412568	TRIM29	Q14134	588 aa		13.37	□□□□□ -0.27
PTPRF-204	ENST00000412568	MAP3K5	Q99683	1374 aa		13.37	□□□□□ -0.27
PTPRF-204	ENST00000412568	CDC42BPB	Q9Y5S2	1711 aa		13.37	□□□□□ -0.27
PTPRF-204	ENST00000412568	HIP1	O00291	1037 aa		13.37	□□□□□ -0.27
PTPRF-204	ENST00000412568	RNMT	O43148	476 aa	Known RBP	13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms