RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 BCL11BQ9C0K0 894 aaPredicted RBP27.09■■□□□ 1.93
TPM1-208ENST00000404484 MCM10Q7L590 875 aa27.09■■□□□ 1.93
TPM1-208ENST00000404484 CAMKK2Q96RR4 588 aa27.09■■□□□ 1.93
TPM1-208ENST00000404484 KCNQ2O43526 872 aa27.08■■□□□ 1.93
TPM1-208ENST00000404484 ZNF428Q96B54 188 aa27.08■■□□□ 1.93
TPM1-208ENST00000404484 TNS1Q9HBL0 1735 aaKnown RBP27.08■■□□□ 1.92
TPM1-208ENST00000404484 RARSP54136 660 aaKnown RBP27.07■■□□□ 1.92
TPM1-208ENST00000404484 EZH2Q15910 746 aaKnown RBP27.07■■□□□ 1.92
TPM1-208ENST00000404484 ACSBG1Q96GR2 724 aa27.07■■□□□ 1.92
TPM1-208ENST00000404484 MBIPQ9NS73 344 aa27.06■■□□□ 1.92
TPM1-208ENST00000404484 SBF2Q86WG5 1849 aa27.06■■□□□ 1.92
TPM1-208ENST00000404484 AKAP4Q5JQC9 854 aa27.05■■□□□ 1.92
TPM1-208ENST00000404484 ZNF530Q6P9A1 599 aaPredicted RBP27.05■■□□□ 1.92
TPM1-208ENST00000404484 KAT6BQ8WYB5 2073 aa27.04■■□□□ 1.92
TPM1-208ENST00000404484 CHL1O00533 1208 aa27.04■■□□□ 1.92
TPM1-208ENST00000404484 C1orf141Q5JVX7 400 aa27.04■■□□□ 1.92
TPM1-208ENST00000404484 PPP4R2Q9NY27 417 aa27.04■■□□□ 1.92
TPM1-208ENST00000404484 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.03■■□□□ 1.925e-8■■■■□ 19.9
TPM1-208ENST00000404484 BABAM1Q9NWV8 329 aa27.02■■□□□ 1.92
TPM1-208ENST00000404484 BCAR3O75815 825 aa27.01■■□□□ 1.92
TPM1-208ENST00000404484 PLIN1O60240 522 aa27.01■■□□□ 1.91
TPM1-208ENST00000404484 PLSCR1O15162 318 aa27■■□□□ 1.91
TPM1-208ENST00000404484 CYP27B1O15528 508 aa27■■□□□ 1.91
TPM1-208ENST00000404484 CANXP27824 592 aaKnown RBP27■■□□□ 1.91
TPM1-208ENST00000404484 SPG7Q9UQ90 795 aa27■■□□□ 1.91
TPM1-208ENST00000404484 ALDH1L2Q3SY69 923 aa26.99■■□□□ 1.91
TPM1-208ENST00000404484 CEMIPQ8WUJ3 1361 aa26.99■■□□□ 1.91
TPM1-208ENST00000404484 SHANK3Q9BYB0 1731 aa26.99■■□□□ 1.91
TPM1-208ENST00000404484 PCDH11XQ9BZA7 1347 aa26.98■■□□□ 1.91
TPM1-208ENST00000404484 PCDH11YQ9BZA8 1340 aa26.98■■□□□ 1.91
TPM1-208ENST00000404484 IL17REQ8NFR9 667 aa26.98■■□□□ 1.91
TPM1-208ENST00000404484 PRIM1P49642 420 aaKnown RBP26.97■■□□□ 1.91
TPM1-208ENST00000404484 SMC4Q9NTJ3 1288 aa26.97■■□□□ 1.91
TPM1-208ENST00000404484 TSPYL4Q9UJ04 414 aa26.97■■□□□ 1.91
TPM1-208ENST00000404484 PDE3AQ14432 1141 aa26.96■■□□□ 1.91
TPM1-208ENST00000404484 PKD1L3Q7Z443 1732 aa26.95■■□□□ 1.9
TPM1-208ENST00000404484 TAF7Q15545 349 aaPredicted RBP26.95■■□□□ 1.9
TPM1-208ENST00000404484 TWISTNBQ3B726 338 aaPredicted RBP26.95■■□□□ 1.9
TPM1-208ENST00000404484 PROM2Q8N271 834 aa26.95■■□□□ 1.9
TPM1-208ENST00000404484 SYTL4Q96C24 671 aaPredicted RBP26.94■■□□□ 1.9
TPM1-208ENST00000404484 VAMP4O75379 141 aa26.93■■□□□ 1.9
TPM1-208ENST00000404484 KIF16BQ96L93 1317 aa26.93■■□□□ 1.9
TPM1-208ENST00000404484 SRCAPQ6ZRS2 3230 aa26.93■■□□□ 1.9
TPM1-208ENST00000404484 MS4A1P11836 297 aa26.92■■□□□ 1.9
TPM1-208ENST00000404484 SSH1Q8WYL5 1049 aa26.92■■□□□ 1.9
TPM1-208ENST00000404484 NHSQ6T4R5 1651 aa26.92■■□□□ 1.9
TPM1-208ENST00000404484 BRPF1P55201 1214 aaPredicted RBP26.91■■□□□ 1.9
TPM1-208ENST00000404484 TEFQ10587 303 aa26.91■■□□□ 1.9
TPM1-208ENST00000404484 NKX1-1Q15270 411 aaPredicted RBP26.91■■□□□ 1.9
TPM1-208ENST00000404484 FRAT1Q92837 279 aaPredicted RBP26.91■■□□□ 1.9
TPM1-208ENST00000404484 BCL2L13Q9BXK5 485 aa26.91■■□□□ 1.9
TPM1-208ENST00000404484 SOS1Q07889 1333 aaPredicted RBP26.91■■□□□ 1.9
TPM1-208ENST00000404484 ADAMTS7Q9UKP4 1686 aa26.9■■□□□ 1.9
TPM1-208ENST00000404484 RNMTO43148 476 aaKnown RBP26.9■■□□□ 1.9
TPM1-208ENST00000404484 IFNL2Q8IZJ0 200 aa26.9■■□□□ 1.9
TPM1-208ENST00000404484 C8orf58Q8NAV2 365 aa26.9■■□□□ 1.9
TPM1-208ENST00000404484 EXOC6Q8TAG9 804 aa26.9■■□□□ 1.9
TPM1-208ENST00000404484 HSP90AB1P08238 724 aaKnown RBP26.89■■□□□ 1.9
TPM1-208ENST00000404484 PHKG2P15735 406 aa26.89■■□□□ 1.9
TPM1-208ENST00000404484 TSPYL6Q8N831 410 aa26.89■■□□□ 1.9
TPM1-208ENST00000404484 CRBNQ96SW2 442 aa26.89■■□□□ 1.9
TPM1-208ENST00000404484 IPO8O15397 1037 aaKnown RBP26.88■■□□□ 1.89
TPM1-208ENST00000404484 TXNRD1Q16881 649 aa26.88■■□□□ 1.89
TPM1-208ENST00000404484 C20orf194Q5TEA3 1177 aa26.88■■□□□ 1.89
TPM1-208ENST00000404484 ZKSCAN2Q63HK3 967 aa26.88■■□□□ 1.89
TPM1-208ENST00000404484 MPRIPQ6WCQ1 1025 aa26.88■■□□□ 1.89
TPM1-208ENST00000404484 LGR6Q9HBX8 967 aa26.87■■□□□ 1.89
TPM1-208ENST00000404484 VIRMAQ69YN4 1812 aaKnown RBP26.86■■□□□ 1.89
TPM1-208ENST00000404484 PSDA5PKW4 1024 aaPredicted RBP26.86■■□□□ 1.89
TPM1-208ENST00000404484 ELL2O00472 640 aaPredicted RBP26.85■■□□□ 1.89
TPM1-208ENST00000404484 PELP1Q8IZL8 1130 aaKnown RBP26.85■■□□□ 1.89
TPM1-208ENST00000404484 MIS18AQ9NYP9 233 aa26.85■■□□□ 1.89
TPM1-208ENST00000404484 BTAF1O14981 1849 aa26.85■■□□□ 1.89
TPM1-208ENST00000404484 DOT1LQ8TEK3 1739 aa26.84■■□□□ 1.89
TPM1-208ENST00000404484 R3HDM1Q15032 1099 aaKnown RBP26.84■■□□□ 1.89
TPM1-208ENST00000404484 RREB1Q92766 1687 aa26.84■■□□□ 1.89
TPM1-208ENST00000404484 SCN11AQ9UI33 1791 aa26.83■■□□□ 1.89
TPM1-208ENST00000404484 NBPF14Q5TI25 921 aa26.83■■□□□ 1.89
TPM1-208ENST00000404484 DCAF5Q96JK2 942 aa26.83■■□□□ 1.89
TPM1-208ENST00000404484 CCDC136Q96JN2 1154 aa26.83■■□□□ 1.89
TPM1-208ENST00000404484 KDM3BQ7LBC6 1761 aa26.82■■□□□ 1.88
TPM1-208ENST00000404484 ATF7IPQ6VMQ6 1270 aa26.82■■□□□ 1.88
TPM1-208ENST00000404484 MRPL50Q8N5N7 158 aaKnown RBP26.82■■□□□ 1.88
TPM1-208ENST00000404484 CHMP4AQ9BY43 222 aa26.82■■□□□ 1.88
TPM1-208ENST00000404484 RGPD3A6NKT7 1758 aaPredicted RBP26.82■■□□□ 1.88
TPM1-208ENST00000404484 RGPD4Q7Z3J3 1758 aa26.82■■□□□ 1.88
TPM1-208ENST00000404484 FTSJ3Q8IY81 847 aaKnown RBP26.81■■□□□ 1.88
TPM1-208ENST00000404484 BTBD11A6QL63 1104 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 AAMPQ13685 434 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 ARHGAP45Q92619 1136 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 NOB1Q9ULX3 412 aaKnown RBP26.8■■□□□ 1.88
TPM1-208ENST00000404484 SIPA1L3O60292 1781 aaPredicted RBP26.8■■□□□ 1.88
TPM1-208ENST00000404484 NUP188Q5SRE5 1749 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 KDM6AO15550 1401 aaPredicted RBP26.8■■□□□ 1.88
TPM1-208ENST00000404484 B4GALNT3Q6L9W6 998 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 DZIP1LQ8IYY4 767 aaKnown RBP26.8■■□□□ 1.88
TPM1-208ENST00000404484 PIGBQ92521 554 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 LRRC4BQ9NT99 713 aa26.8■■□□□ 1.88
TPM1-208ENST00000404484 KRT24Q2M2I5 525 aa26.79■■□□□ 1.88
TPM1-208ENST00000404484 ANO8Q9HCE9 1232 aaPredicted RBP26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms