RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 ZFYVE27Q5T4F4 411 aa9.45□□□□□ -0.9
USP47-203ENST00000399455 IFT57Q9NWB7 429 aa9.45□□□□□ -0.9
USP47-203ENST00000399455 NAP1L5Q96NT1 182 aaPredicted RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 VPS37CA5D8V6 355 aaPredicted RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 CHRNA2Q15822 529 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 NME9Q86XW9 330 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 NUP133Q8WUM0 1156 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 NAT10Q9H0A0 1025 aaKnown RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 EYA3Q99504 573 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 OFD1O75665 1012 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 CWC25Q9NXE8 425 aaPredicted RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 ADAMTS8Q9UP79 889 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 PPIP5K1Q6PFW1 1433 aa9.44□□□□□ -0.9
USP47-203ENST00000399455 IDH1O75874 414 aaKnown RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 ZNF444Q8N0Y2 327 aaPredicted RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 RBM17Q96I25 401 aaKnown RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 C14orf93Q9H972 538 aaKnown RBP9.44□□□□□ -0.9
USP47-203ENST00000399455 TSPOAP1O95153 1857 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 USP21Q9UK80 565 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 STK11IPQ8N1F8 1099 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 SPINK5Q9NQ38 1064 aaPredicted RBP9.43□□□□□ -0.9
USP47-203ENST00000399455 ARHGEF10O15013 1369 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 PCDH11XQ9BZA7 1347 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 PCDH11YQ9BZA8 1340 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 RAB11FIP3O75154 756 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 SNRPA1P09661 255 aaKnown RBP9.43□□□□□ -0.9
USP47-203ENST00000399455 ZNF804AQ7Z570 1209 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 BMP2KQ9NSY1 1161 aaPredicted RBP9.43□□□□□ -0.9
USP47-203ENST00000399455 TTF1Q15361 905 aaPredicted RBP9.43□□□□□ -0.9
USP47-203ENST00000399455 SASS6Q6UVJ0 657 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 IMMTQ16891 758 aaKnown RBP9.43□□□□□ -0.9
USP47-203ENST00000399455 HSP90AB2PQ58FF8 381 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 CHMP5Q9NZZ3 219 aa9.43□□□□□ -0.9
USP47-203ENST00000399455 SRGAP3O43295 1099 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 CCDC96Q2M329 555 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 JMYQ8N9B5 988 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 ABCC11Q96J66 1382 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 GPATCH8Q9UKJ3 1502 aaKnown RBP9.42□□□□□ -0.9
USP47-203ENST00000399455 B4DLN1 442 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 MRPL12P52815 198 aaKnown RBP9.42□□□□□ -0.9
USP47-203ENST00000399455 NAP1L1P55209 391 aaKnown RBP9.42□□□□□ -0.9
USP47-203ENST00000399455 NEO1Q92859 1461 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 STIM1Q13586 685 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 DUSP27Q5VZP5 1158 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 CCDC85AQ96PX6 553 aaPredicted RBP9.42□□□□□ -0.9
USP47-203ENST00000399455 LNPKQ9C0E8 428 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 DBF4Q9UBU7 674 aaPredicted RBP9.42□□□□□ -0.9
USP47-203ENST00000399455 CEP170Q5SW79 1584 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 TNNI2P48788 182 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 TRAPPC3LQ5T215 181 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 CHMP4BP1P59074 171 aa9.42□□□□□ -0.9
USP47-203ENST00000399455 PDCP20941 246 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 DRC1Q96MC2 740 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 KDM4AO75164 1064 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 IBSPP21815 317 aaPredicted RBP9.41□□□□□ -0.9
USP47-203ENST00000399455 MCM2P49736 904 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 CCDC173Q0VFZ6 552 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 CCDC87Q9NVE4 849 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 ANKRD36BQ8N2N9 1353 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 NLRP3Q96P20 1036 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 KCNA6P17658 529 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 KRT32Q14532 448 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 ANKRD18AQ8IVF6 992 aa9.41□□□□□ -0.9
USP47-203ENST00000399455 ADGRF5Q8IZF2 1346 aa9.4□□□□□ -0.9
USP47-203ENST00000399455 TRAF1Q13077 416 aa9.4□□□□□ -0.9
USP47-203ENST00000399455 MYO6Q9UM54 1294 aa9.4□□□□□ -0.9
USP47-203ENST00000399455 PDCL3Q9H2J4 239 aa9.4□□□□□ -0.9
USP47-203ENST00000399455 RNF41Q9H4P4 317 aaPredicted RBP9.4□□□□□ -0.9
USP47-203ENST00000399455 GOLGA6L3A6NEY3 463 aa9.4□□□□□ -0.9
USP47-203ENST00000399455 GPTP24298 496 aa9.4□□□□□ -0.9
USP47-203ENST00000399455 UTP14AQ9BVJ6 771 aaKnown RBP9.4□□□□□ -0.9
USP47-203ENST00000399455 TPTE2Q6XPS3 522 aa9.4□□□□□ -0.91
USP47-203ENST00000399455 ABCC1P33527 1531 aa9.4□□□□□ -0.91
USP47-203ENST00000399455 NEBLO76041 1014 aa9.4□□□□□ -0.91
USP47-203ENST00000399455 EIF6P56537 245 aaKnown RBP9.4□□□□□ -0.91
USP47-203ENST00000399455 MVPQ14764 893 aaKnown RBP9.4□□□□□ -0.91
USP47-203ENST00000399455 BTG4Q9NY30 223 aa9.4□□□□□ -0.91
USP47-203ENST00000399455 NUCB2P80303 420 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 SUPT20HQ8NEM7 779 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 VTI1AQ96AJ9 217 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 GZF1Q9H116 711 aaPredicted RBP9.39□□□□□ -0.91
USP47-203ENST00000399455 CYP46A1Q9Y6A2 500 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 MCM10Q7L590 875 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 PANK1Q8TE04 598 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 HOOK2Q96ED9 719 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 ZHX3Q9H4I2 956 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 FLAD1Q8NFF5 587 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 ATP7AQ04656 1500 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 CCDC150Q8NCX0 1101 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 TSR2Q969E8 191 aaKnown RBP9.39□□□□□ -0.91
USP47-203ENST00000399455 DACH1Q9UI36 760 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 CEP131Q9UPN4 1083 aa9.39□□□□□ -0.91
USP47-203ENST00000399455 FILIP1LQ4L180 1135 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 CCDC178Q5BJE1 867 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 GPR162Q16538 588 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.38□□□□□ -0.91
USP47-203ENST00000399455 FOXD4L6Q3SYB3 417 aaPredicted RBP9.38□□□□□ -0.91
USP47-203ENST00000399455 FOXD4L3Q6VB84 417 aaPredicted RBP9.38□□□□□ -0.91
USP47-203ENST00000399455 TXLNBQ8N3L3 684 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 EXOC6Q8TAG9 804 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms