RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 DCTN1Q14203 1278 aa19.47■□□□□ 0.71
SCAF11-204ENST00000395454 FAM182BQ5T319 152 aa19.47■□□□□ 0.71
SCAF11-204ENST00000395454 MCM10Q7L590 875 aa19.47■□□□□ 0.71
SCAF11-204ENST00000395454 HSP90AB1P08238 724 aaKnown RBP19.47■□□□□ 0.71
SCAF11-204ENST00000395454 KRT27Q7Z3Y8 459 aa19.47■□□□□ 0.71
SCAF11-204ENST00000395454 CALD1Q05682 793 aaKnown RBP19.45■□□□□ 0.7
SCAF11-204ENST00000395454 DCAF5Q96JK2 942 aa19.45■□□□□ 0.7
SCAF11-204ENST00000395454 VIRMAQ69YN4 1812 aaKnown RBP19.45■□□□□ 0.7
SCAF11-204ENST00000395454 THUMPD2Q9BTF0 503 aaKnown RBP19.45■□□□□ 0.7
SCAF11-204ENST00000395454 LGR6Q9HBX8 967 aa19.45■□□□□ 0.7
SCAF11-204ENST00000395454 HTATSF1O43719 755 aaKnown RBP19.44■□□□□ 0.7
SCAF11-204ENST00000395454 NKX1-1Q15270 411 aaPredicted RBP19.44■□□□□ 0.7
SCAF11-204ENST00000395454 IL17REQ8NFR9 667 aa19.44■□□□□ 0.7
SCAF11-204ENST00000395454 KDM6AO15550 1401 aaPredicted RBP19.44■□□□□ 0.7
SCAF11-204ENST00000395454 RNMTO43148 476 aaKnown RBP19.43■□□□□ 0.7
SCAF11-204ENST00000395454 ZNF853P0CG23 659 aa19.42■□□□□ 0.7
SCAF11-204ENST00000395454 SCN11AQ9UI33 1791 aa19.42■□□□□ 0.7
SCAF11-204ENST00000395454 TSR2Q969E8 191 aaKnown RBP19.41■□□□□ 0.7
SCAF11-204ENST00000395454 SYTL4Q96C24 671 aaPredicted RBP19.41■□□□□ 0.7
SCAF11-204ENST00000395454 IFT57Q9NWB7 429 aa19.41■□□□□ 0.7
SCAF11-204ENST00000395454 CEMIPQ8WUJ3 1361 aa19.4■□□□□ 0.7
SCAF11-204ENST00000395454 EXOSC9Q06265 439 aaKnown RBP19.4■□□□□ 0.7
SCAF11-204ENST00000395454 TEFQ10587 303 aa19.4■□□□□ 0.7
SCAF11-204ENST00000395454 ZNF428Q96B54 188 aa19.4■□□□□ 0.7
SCAF11-204ENST00000395454 ACSBG1Q96GR2 724 aa19.4■□□□□ 0.7
SCAF11-204ENST00000395454 KDM2BQ8NHM5 1336 aa19.39■□□□□ 0.7
SCAF11-204ENST00000395454 DOT1LQ8TEK3 1739 aa19.39■□□□□ 0.69
SCAF11-204ENST00000395454 TOGARAM1Q9Y4F4 1720 aa19.39■□□□□ 0.69
SCAF11-204ENST00000395454 AAMPQ13685 434 aa19.39■□□□□ 0.69
SCAF11-204ENST00000395454 ADAMTS7Q9UKP4 1686 aa19.39■□□□□ 0.69
SCAF11-204ENST00000395454 CABP4P57796 275 aa19.38■□□□□ 0.69
SCAF11-204ENST00000395454 NFATC2IPQ8NCF5 419 aa19.38■□□□□ 0.69
SCAF11-204ENST00000395454 ERVV-2B6SEH9 535 aa19.37■□□□□ 0.69
SCAF11-204ENST00000395454 GNAI1P63096 354 aa19.37■□□□□ 0.69
SCAF11-204ENST00000395454 FAM196AQ6ZSG2 479 aa19.37■□□□□ 0.69
SCAF11-204ENST00000395454 SLC52A2Q9HAB3 445 aa19.37■□□□□ 0.69
SCAF11-204ENST00000395454 PRIM1P49642 420 aaKnown RBP19.37■□□□□ 0.69
SCAF11-204ENST00000395454 BRPF1P55201 1214 aaPredicted RBP19.37■□□□□ 0.69
SCAF11-204ENST00000395454 LAS1LQ9Y4W2 734 aaKnown RBP19.37■□□□□ 0.69
SCAF11-204ENST00000395454 TMOD3Q9NYL9 352 aa19.36■□□□□ 0.69
SCAF11-204ENST00000395454 ITGB4P16144 1822 aa19.36■□□□□ 0.69
SCAF11-204ENST00000395454 BCL9O00512 1426 aa19.35■□□□□ 0.69
SCAF11-204ENST00000395454 CFAP44Q96MT7 982 aa19.35■□□□□ 0.69
SCAF11-204ENST00000395454 KCNQ2O43526 872 aa19.35■□□□□ 0.69
SCAF11-204ENST00000395454 ALDH1L2Q3SY69 923 aa19.35■□□□□ 0.69
SCAF11-204ENST00000395454 MRC1P22897 1456 aa19.34■□□□□ 0.69
SCAF11-204ENST00000395454 TAF7Q15545 349 aaPredicted RBP19.33■□□□□ 0.69
SCAF11-204ENST00000395454 MIS18AQ9NYP9 233 aa19.33■□□□□ 0.69
SCAF11-204ENST00000395454 SBF2Q86WG5 1849 aa19.33■□□□□ 0.69
SCAF11-204ENST00000395454 BTBD11A6QL63 1104 aa19.33■□□□□ 0.68
SCAF11-204ENST00000395454 SSH1Q8WYL5 1049 aa19.33■□□□□ 0.68
SCAF11-204ENST00000395454 PIGBQ92521 554 aa19.33■□□□□ 0.68
SCAF11-204ENST00000395454 SIPA1L3O60292 1781 aaPredicted RBP19.32■□□□□ 0.68
SCAF11-204ENST00000395454 CENPQQ7L2Z9 268 aaPredicted RBP19.32■□□□□ 0.68
SCAF11-204ENST00000395454 TRIM37O94972 964 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 MS4A1P11836 297 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 CANXP27824 592 aaKnown RBP19.31■□□□□ 0.68
SCAF11-204ENST00000395454 TSPYL4Q9UJ04 414 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 ZKSCAN2Q63HK3 967 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 PTF1AQ7RTS3 328 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 MBIPQ9NS73 344 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 RBM19Q9Y4C8 960 aaKnown RBP19.31■□□□□ 0.68
SCAF11-204ENST00000395454 KIF16BQ96L93 1317 aa19.31■□□□□ 0.68
SCAF11-204ENST00000395454 NHSQ6T4R5 1651 aa19.3■□□□□ 0.68
SCAF11-204ENST00000395454 RLBP1P12271 317 aa19.3■□□□□ 0.68
SCAF11-204ENST00000395454 PANK1Q8TE04 598 aa19.3■□□□□ 0.68
SCAF11-204ENST00000395454 SMC4Q9NTJ3 1288 aa19.3■□□□□ 0.68
SCAF11-204ENST00000395454 SLC39A6Q13433 755 aa19.29■□□□□ 0.68
SCAF11-204ENST00000395454 FRAT1Q92837 279 aaPredicted RBP19.29■□□□□ 0.68
SCAF11-204ENST00000395454 BCL2L13Q9BXK5 485 aa19.29■□□□□ 0.68
SCAF11-204ENST00000395454 CLUAP1Q96AJ1 413 aa19.29■□□□□ 0.68
SCAF11-204ENST00000395454 CHL1O00533 1208 aa19.28■□□□□ 0.68
SCAF11-204ENST00000395454 VAMP4O75379 141 aa19.28■□□□□ 0.68
SCAF11-204ENST00000395454 BCL11BQ9C0K0 894 aaPredicted RBP19.28■□□□□ 0.68
SCAF11-204ENST00000395454 ZNF790Q6PG37 636 aa19.27■□□□□ 0.68
SCAF11-204ENST00000395454 TTC5Q8N0Z6 440 aa19.27■□□□□ 0.68
SCAF11-204ENST00000395454 ASAP1Q9ULH1 1129 aa19.27■□□□□ 0.68
SCAF11-204ENST00000395454 COG6Q9Y2V7 657 aa19.27■□□□□ 0.68
SCAF11-204ENST00000395454 TCERG1O14776 1098 aaKnown RBP19.27■□□□□ 0.67
SCAF11-204ENST00000395454 BTAF1O14981 1849 aa19.26■□□□□ 0.67
SCAF11-204ENST00000395454 KCNQ3O43525 872 aa19.26■□□□□ 0.67
SCAF11-204ENST00000395454 ATF7IPQ6VMQ6 1270 aa19.26■□□□□ 0.67
SCAF11-204ENST00000395454 BABAM1Q9NWV8 329 aa19.26■□□□□ 0.67
SCAF11-204ENST00000395454 TRIM27P14373 513 aa19.25■□□□□ 0.67
SCAF11-204ENST00000395454 MVPQ14764 893 aaKnown RBP19.25■□□□□ 0.67
SCAF11-204ENST00000395454 DZIP1LQ8IYY4 767 aaKnown RBP19.25■□□□□ 0.67
SCAF11-204ENST00000395454 ATG3Q9NT62 314 aa19.25■□□□□ 0.67
SCAF11-204ENST00000395454 KDM3BQ7LBC6 1761 aa19.25■□□□□ 0.67
SCAF11-204ENST00000395454 TNNQ9UQP3 1299 aa19.25■□□□□ 0.67
SCAF11-204ENST00000395454 ARHGAP45Q92619 1136 aa19.24■□□□□ 0.67
SCAF11-204ENST00000395454 IPO8O15397 1037 aaKnown RBP19.23■□□□□ 0.67
SCAF11-204ENST00000395454 PTCD1O75127 700 aaKnown RBP19.23■□□□□ 0.67
SCAF11-204ENST00000395454 PAPPAQ13219 1627 aa19.23■□□□□ 0.67
SCAF11-204ENST00000395454 TSPYL6Q8N831 410 aa19.23■□□□□ 0.67
SCAF11-204ENST00000395454 PALLDQ8WX93 1383 aa19.22■□□□□ 0.67
SCAF11-204ENST00000395454 TWISTNBQ3B726 338 aaPredicted RBP19.21■□□□□ 0.67
SCAF11-204ENST00000395454 MRPL50Q8N5N7 158 aaKnown RBP19.21■□□□□ 0.67
SCAF11-204ENST00000395454 SMARCC1Q92922 1105 aaPredicted RBP19.21■□□□□ 0.67
SCAF11-204ENST00000395454 ZNF496Q96IT1 587 aaPredicted RBP19.21■□□□□ 0.67
SCAF11-204ENST00000395454 RBM42Q9BTD8 480 aaKnown RBP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms