RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 PKP1Q13835 747 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 IP6K1Q92551 441 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 CHAMP1Q96JM3 812 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 GNAT3A8MTJ3 354 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 L1TD1Q5T7N2 865 aaKnown RBP16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 NBPF6Q5VWK0 638 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 NBPF4Q96M43 638 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 EXOC6BQ9Y2D4 811 aa16.69■□□□□ 0.26
GTF2F1-201ENST00000394456 KIAA0232Q92628 1395 aa16.68■□□□□ 0.26
GTF2F1-201ENST00000394456 LRRC59Q96AG4 307 aaKnown RBP16.68■□□□□ 0.26
GTF2F1-201ENST00000394456 USP26Q9BXU7 913 aa16.68■□□□□ 0.26
GTF2F1-201ENST00000394456 FAM43AQ8N2R8 423 aa16.67■□□□□ 0.26
GTF2F1-201ENST00000394456 GCP02774 474 aa16.66■□□□□ 0.26
GTF2F1-201ENST00000394456 HSPA2P54652 639 aa16.66■□□□□ 0.26
GTF2F1-201ENST00000394456 KCNH5Q8NCM2 988 aa16.66■□□□□ 0.26
GTF2F1-201ENST00000394456 RPAP2Q8IXW5 612 aaPredicted RBP16.66■□□□□ 0.26
GTF2F1-201ENST00000394456 IL17REQ8NFR9 667 aa16.66■□□□□ 0.26
GTF2F1-201ENST00000394456 MAP3K5Q99683 1374 aa16.66■□□□□ 0.26
GTF2F1-201ENST00000394456 STRCP1A6NGW2 1772 aa16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 DDX11L8A8MPP1 907 aa16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 KRT28Q7Z3Y7 464 aa16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 DDX17Q92841 729 aaKnown RBP16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 LRRC37A3O60309 1634 aa16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 HAP1P54257 671 aaPredicted RBP16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 C19orf44Q9H6X5 657 aa16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 C1orf167Q5SNV9 1468 aa16.65■□□□□ 0.26
GTF2F1-201ENST00000394456 AK9Q5TCS8 1911 aa16.64■□□□□ 0.26
GTF2F1-201ENST00000394456 ZGPATQ8N5A5 531 aaKnown RBP16.64■□□□□ 0.25
GTF2F1-201ENST00000394456 PTPRCP08575 1304 aa16.64■□□□□ 0.25
GTF2F1-201ENST00000394456 PNMA6EA0A0J9YXQ4 647 aa16.64■□□□□ 0.25
GTF2F1-201ENST00000394456 TRPM3Q9HCF6 1732 aaPredicted RBP16.63■□□□□ 0.25
GTF2F1-201ENST00000394456 TMEM94Q12767 1356 aa16.63■□□□□ 0.25
GTF2F1-201ENST00000394456 HTATSF1O43719 755 aaKnown RBP16.62■□□□□ 0.25
GTF2F1-201ENST00000394456 GRPEL1Q9HAV7 217 aa16.62■□□□□ 0.25
GTF2F1-201ENST00000394456 CIZ1Q9ULV3 898 aaPredicted RBP16.62■□□□□ 0.25
GTF2F1-201ENST00000394456 ARHGEF25Q86VW2 580 aa16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 RGPD5Q99666 1765 aa16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 ATF3P18847 181 aa16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 FKBP5Q13451 457 aaPredicted RBP16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 PDE1AP54750 535 aa16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 FOXD4L5Q5VV16 416 aaPredicted RBP16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 FOXD4L4Q8WXT5 416 aaPredicted RBP16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 GBP4Q96PP9 640 aa16.61■□□□□ 0.25
GTF2F1-201ENST00000394456 FLIIQ13045 1269 aa16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 AXIN2Q9Y2T1 843 aa16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 SLIT3O75094 1523 aa16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 PHRF1Q9P1Y6 1649 aaKnown RBP16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 KIF1AQ12756 1690 aa16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 BAG4O95429 457 aaKnown RBP16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 ZC3H6P61129 1189 aaKnown RBP16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 LGR6Q9HBX8 967 aa16.6■□□□□ 0.25
GTF2F1-201ENST00000394456 EIF5BO60841 1220 aaKnown RBP16.59■□□□□ 0.25
GTF2F1-201ENST00000394456 RABEP1Q15276 862 aa16.59■□□□□ 0.25
GTF2F1-201ENST00000394456 TAF7Q15545 349 aaPredicted RBP16.59■□□□□ 0.25
GTF2F1-201ENST00000394456 NOL8Q76FK4 1167 aaKnown RBP16.59■□□□□ 0.25
GTF2F1-201ENST00000394456 ANKRD24Q8TF21 1146 aa16.59■□□□□ 0.25
GTF2F1-201ENST00000394456 PHAXQ9H814 394 aaKnown RBP16.59■□□□□ 0.25
GTF2F1-201ENST00000394456 UNC5CLQ8IV45 518 aa16.58■□□□□ 0.25
GTF2F1-201ENST00000394456 FAM208AQ9UK61 1670 aaKnown RBP16.58■□□□□ 0.24
GTF2F1-201ENST00000394456 MST1RQ04912 1400 aa16.58■□□□□ 0.24
GTF2F1-201ENST00000394456 MRE11P49959 708 aa16.58■□□□□ 0.24
GTF2F1-201ENST00000394456 MCTP1Q6DN14 999 aa16.58■□□□□ 0.24
GTF2F1-201ENST00000394456 STK31Q9BXU1 1019 aa16.58■□□□□ 0.24
GTF2F1-201ENST00000394456 LRRFIP2Q9Y608 721 aaKnown RBP16.58■□□□□ 0.24
GTF2F1-201ENST00000394456 ERBB4Q15303 1308 aa16.57■□□□□ 0.24
GTF2F1-201ENST00000394456 PALD1Q9ULE6 856 aa16.57■□□□□ 0.24
GTF2F1-201ENST00000394456 GNAI2P04899 355 aa16.57■□□□□ 0.24
GTF2F1-201ENST00000394456 ZNF530Q6P9A1 599 aaPredicted RBP16.57■□□□□ 0.24
GTF2F1-201ENST00000394456 IL25Q9H293 177 aa16.57■□□□□ 0.24
GTF2F1-201ENST00000394456 IL1RAPL2Q9NP60 686 aa16.57■□□□□ 0.24
GTF2F1-201ENST00000394456 CCT4P50991 539 aaKnown RBP16.56■□□□□ 0.24
GTF2F1-201ENST00000394456 MPRIPQ6WCQ1 1025 aa16.56■□□□□ 0.24
GTF2F1-201ENST00000394456 MAP4K4O95819 1239 aaPredicted RBP16.56■□□□□ 0.24
GTF2F1-201ENST00000394456 ANXA1P04083 346 aa16.56■□□□□ 0.24
GTF2F1-201ENST00000394456 ZDHHC9Q9Y397 364 aa16.56■□□□□ 0.24
GTF2F1-201ENST00000394456 ALS2Q96Q42 1657 aa16.55■□□□□ 0.24
GTF2F1-201ENST00000394456 PXDNQ92626 1479 aa16.55■□□□□ 0.24
GTF2F1-201ENST00000394456 KCNQ3O43525 872 aa16.55■□□□□ 0.24
GTF2F1-201ENST00000394456 HMMRO75330 724 aa16.55■□□□□ 0.24
GTF2F1-201ENST00000394456 CABLES1Q8TDN4 633 aa16.55■□□□□ 0.24
GTF2F1-201ENST00000394456 RILPL2Q969X0 211 aa16.55■□□□□ 0.24
GTF2F1-201ENST00000394456 ERC2O15083 957 aa16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 MED1Q15648 1581 aaPredicted RBP16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 CCDC30Q5VVM6 783 aa16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 DDX49Q9Y6V7 483 aaKnown RBP16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 CEMIPQ8WUJ3 1361 aa16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 SALL3Q9BXA9 1300 aa16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 NCLP19338 710 aaKnown RBP16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 EIF2S2P20042 333 aaKnown RBP16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 USP44Q9H0E7 712 aa16.54■□□□□ 0.24
GTF2F1-201ENST00000394456 CACNA1FO60840 1977 aa16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 PLEKHO1Q53GL0 409 aaPredicted RBP16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 NUTM1Q86Y26 1132 aa16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 TRIM6-TRIM34B2RNG4 842 aa16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 DTNBO60941 627 aa16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 CYP2E1P05181 493 aaPredicted RBP16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 RBM27Q9P2N5 1060 aaKnown RBP16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 LMO7Q8WWI1 1683 aa16.53■□□□□ 0.24
GTF2F1-201ENST00000394456 NEK4P51957 841 aa16.52■□□□□ 0.24
GTF2F1-201ENST00000394456 HDGFL1Q5TGJ6 251 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms