RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SETD1BQ9UPS6 1966 aaKnown RBP11.91□□□□□ -0.5
COL6A3-204ENST00000392003 APBB1O00213 710 aa11.91□□□□□ -0.5
COL6A3-204ENST00000392003 MSH6P52701 1360 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 CEP85Q6P2H3 762 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 MEIS3Q99687 375 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 C19orf44Q9H6X5 657 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 KRT28Q7Z3Y7 464 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 SNX21Q969T3 373 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 RGPD1P0DJD0 1748 aa11.9□□□□□ -0.5
COL6A3-204ENST00000392003 PLEKHM2Q8IWE5 1019 aa11.9□□□□□ -0.51
COL6A3-204ENST00000392003 FMN2Q9NZ56 1722 aa11.89□□□□□ -0.51
COL6A3-204ENST00000392003 FKBP5Q13451 457 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-204ENST00000392003 RTL1A6NKG5 1358 aa11.89□□□□□ -0.51
COL6A3-204ENST00000392003 TTC22Q5TAA0 569 aa11.88□□□□□ -0.51
COL6A3-204ENST00000392003 RGPD8O14715 1765 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-204ENST00000392003 GNAI2P04899 355 aa11.88□□□□□ -0.51
COL6A3-204ENST00000392003 F6X3S4 739 aa11.88□□□□□ -0.51
COL6A3-204ENST00000392003 GNAI3P08754 354 aa11.88□□□□□ -0.51
COL6A3-204ENST00000392003 TAF7Q15545 349 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-204ENST00000392003 MAP3K5Q99683 1374 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 SOS1Q07889 1333 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-204ENST00000392003 G2E3Q7L622 706 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 RGS12O14924 1447 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 XRN1Q8IZH2 1706 aaKnown RBP11.87□□□□□ -0.51
COL6A3-204ENST00000392003 ZC3H6P61129 1189 aaKnown RBP11.87□□□□□ -0.51
COL6A3-204ENST00000392003 BABAM1Q9NWV8 329 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 ADGRL3Q9HAR2 1447 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 CSB-PGBD3P0DP91 1061 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 MCM4P33991 863 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 IP6K1Q92551 441 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 NECTIN2Q92692 538 aa11.87□□□□□ -0.51
COL6A3-204ENST00000392003 PIK3C2AO00443 1686 aa11.86□□□□□ -0.51
COL6A3-204ENST00000392003 GCP02774 474 aa11.86□□□□□ -0.51
COL6A3-204ENST00000392003 FLIIQ13045 1269 aa11.86□□□□□ -0.51
COL6A3-204ENST00000392003 ATP10DQ9P241 1426 aa11.86□□□□□ -0.51
COL6A3-204ENST00000392003 C16orf71Q8IYS4 520 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-204ENST00000392003 KCNG1Q9UIX4 513 aa11.86□□□□□ -0.51
COL6A3-204ENST00000392003 CIZ1Q9ULV3 898 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-204ENST00000392003 SMARCA5O60264 1052 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-204ENST00000392003 GSPT1P15170 499 aaKnown RBP11.85□□□□□ -0.51
COL6A3-204ENST00000392003 TEFQ10587 303 aa11.85□□□□□ -0.51
COL6A3-204ENST00000392003 DDX11L8A8MPP1 907 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 C1orf141Q5JVX7 400 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 L1TD1Q5T7N2 865 aaKnown RBP11.84□□□□□ -0.51
COL6A3-204ENST00000392003 K7ELQ4 463 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-204ENST00000392003 HOMEZQ8IX15 550 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 LRRC59Q96AG4 307 aaKnown RBP11.84□□□□□ -0.51
COL6A3-204ENST00000392003 RABEP1Q15276 862 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 PLEKHO1Q53GL0 409 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-204ENST00000392003 HDGFL1Q5TGJ6 251 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 ZNF530Q6P9A1 599 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-204ENST00000392003 CADPS2Q86UW7 1296 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 IL17REQ8NFR9 667 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 GBP4Q96PP9 640 aa11.84□□□□□ -0.51
COL6A3-204ENST00000392003 REC8O95072 547 aa11.83□□□□□ -0.52
COL6A3-204ENST00000392003 NLRP2Q9NX02 1062 aa11.83□□□□□ -0.52
COL6A3-204ENST00000392003 NBPF6Q5VWK0 638 aa11.83□□□□□ -0.52
COL6A3-204ENST00000392003 NBPF4Q96M43 638 aa11.83□□□□□ -0.52
COL6A3-204ENST00000392003 TMEM94Q12767 1356 aa11.82□□□□□ -0.52
COL6A3-204ENST00000392003 SDSP20132 328 aa11.82□□□□□ -0.52
COL6A3-204ENST00000392003 OTUD7AQ8TE49 926 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-204ENST00000392003 DDX17Q92841 729 aaKnown RBP11.82□□□□□ -0.52
COL6A3-204ENST00000392003 ANKRD24Q8TF21 1146 aa11.82□□□□□ -0.52
COL6A3-204ENST00000392003 MAPK8IP2Q13387 824 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-204ENST00000392003 CNPY4Q8N129 248 aa11.81□□□□□ -0.52
COL6A3-204ENST00000392003 LRRCC1Q9C099 1032 aa11.81□□□□□ -0.52
COL6A3-204ENST00000392003 TMEM51Q9NW97 253 aa11.81□□□□□ -0.52
COL6A3-204ENST00000392003 UBTFL1P0CB47 393 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-204ENST00000392003 EIF2S2P20042 333 aaKnown RBP11.81□□□□□ -0.52
COL6A3-204ENST00000392003 PTMSP20962 102 aa11.81□□□□□ -0.52
COL6A3-204ENST00000392003 FOXD4L1Q9NU39 408 aa11.81□□□□□ -0.52
COL6A3-204ENST00000392003 EXOC6BQ9Y2D4 811 aa11.81□□□□□ -0.52
COL6A3-204ENST00000392003 TRAK2O60296 914 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 ATP8B2P98198 1209 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 RAPGEF4Q8WZA2 1011 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 KIF2CQ99661 725 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 PDE1AP54750 535 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 RBM42Q9BTD8 480 aaKnown RBP11.8□□□□□ -0.52
COL6A3-204ENST00000392003 ADAMTSL3P82987 1691 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 GOLGA6L22H0YM25 854 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 ERC2O15083 957 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 ST18O60284 1047 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 USP26Q9BXU7 913 aa11.8□□□□□ -0.52
COL6A3-204ENST00000392003 GZF1Q9H116 711 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-204ENST00000392003 MPRIPQ6WCQ1 1025 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 CABLES1Q8TDN4 633 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 NCOA3Q9Y6Q9 1424 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 GOLGA6L3A6NEY3 463 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 ARHGEF25Q86VW2 580 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 SRCIN1Q9C0H9 1055 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 PRDM10Q9NQV6 1147 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 NPHP3Q7Z494 1330 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 ARID3AQ99856 593 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 OSBPL3Q9H4L5 887 aa11.79□□□□□ -0.52
COL6A3-204ENST00000392003 LRRFIP2Q9Y608 721 aaKnown RBP11.79□□□□□ -0.52
COL6A3-204ENST00000392003 AMOTQ4VCS5 1084 aa11.78□□□□□ -0.52
COL6A3-204ENST00000392003 TEX2Q8IWB9 1127 aa11.78□□□□□ -0.52
COL6A3-204ENST00000392003 TRIM6-TRIM34B2RNG4 842 aa11.78□□□□□ -0.52
COL6A3-204ENST00000392003 MCCP23508 829 aa11.78□□□□□ -0.52
COL6A3-204ENST00000392003 TNPO1Q92973 898 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms