RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 NUCB1Q02818 461 aa15.77■□□□□ 0.11
NPHP4-203ENST00000378169 LARP1BQ659C4 914 aaKnown RBP15.77■□□□□ 0.11
NPHP4-203ENST00000378169 PRPF40BQ6NWY9 871 aaKnown RBP15.77■□□□□ 0.11
NPHP4-203ENST00000378169 CABLES1Q8TDN4 633 aa15.77■□□□□ 0.11
NPHP4-203ENST00000378169 TTC21AQ8NDW8 1320 aa15.77■□□□□ 0.11
NPHP4-203ENST00000378169 AMOTL1Q8IY63 956 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 CHPF2Q9P2E5 772 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 FERMT3Q86UX7 667 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 PDRG1Q9NUG6 133 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 CIZ1Q9ULV3 898 aaPredicted RBP15.76■□□□□ 0.11
NPHP4-203ENST00000378169 SEC24BO95487 1268 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 ADAMTS2O95450 1211 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 PIP4K2AP48426 406 aaPredicted RBP15.76■□□□□ 0.11
NPHP4-203ENST00000378169 SAFBQ15424 915 aaKnown RBP eCLIP15.76■□□□□ 0.11
NPHP4-203ENST00000378169 ZNF592Q92610 1267 aa15.76■□□□□ 0.11
NPHP4-203ENST00000378169 WDR33Q9C0J8 1336 aaKnown RBP15.75■□□□□ 0.11
NPHP4-203ENST00000378169 GCC2Q8IWJ2 1684 aa15.75■□□□□ 0.11
NPHP4-203ENST00000378169 ABCC1P33527 1531 aa15.75■□□□□ 0.11
NPHP4-203ENST00000378169 PTPRTO14522 1441 aa15.75■□□□□ 0.11
NPHP4-203ENST00000378169 RAB11FIP3O75154 756 aa15.75■□□□□ 0.11
NPHP4-203ENST00000378169 FAM43AQ8N2R8 423 aa15.75■□□□□ 0.11
NPHP4-203ENST00000378169 UBE3BQ7Z3V4 1068 aa15.75■□□□□ 0.11
NPHP4-203ENST00000378169 ZBTB40Q9NUA8 1239 aa15.74■□□□□ 0.11
NPHP4-203ENST00000378169 TMOD3Q9NYL9 352 aa15.74■□□□□ 0.11
NPHP4-203ENST00000378169 BICDL1Q6ZP65 573 aa15.74■□□□□ 0.11
NPHP4-203ENST00000378169 TRIM35Q9UPQ4 493 aa15.74■□□□□ 0.11
NPHP4-203ENST00000378169 NPC1L1Q9UHC9 1359 aa15.74■□□□□ 0.11
NPHP4-203ENST00000378169 HYPKQ9NX55 129 aa15.74■□□□□ 0.11
NPHP4-203ENST00000378169 IDH1O75874 414 aaKnown RBP15.73■□□□□ 0.11
NPHP4-203ENST00000378169 SSFA2P28290 1259 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 FMNL2Q96PY5 1086 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 SDSP20132 328 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 IFNL2Q8IZJ0 200 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 DDX11Q96FC9 970 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 ABCA8O94911 1581 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 CCDC83Q8IWF9 413 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 ANKRD44Q8N8A2 993 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 STARD3NLO95772 234 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 TTC22Q5TAA0 569 aa15.73■□□□□ 0.11
NPHP4-203ENST00000378169 GPTP24298 496 aa15.72■□□□□ 0.11
NPHP4-203ENST00000378169 GRPEL1Q9HAV7 217 aa15.72■□□□□ 0.11
NPHP4-203ENST00000378169 CADPS2Q86UW7 1296 aa15.72■□□□□ 0.11
NPHP4-203ENST00000378169 BCL11BQ9C0K0 894 aaPredicted RBP15.72■□□□□ 0.11
NPHP4-203ENST00000378169 FLT4P35916 1363 aa15.72■□□□□ 0.11
NPHP4-203ENST00000378169 PIK3R4Q99570 1358 aa15.71■□□□□ 0.11
NPHP4-203ENST00000378169 IL13P35225 146 aa15.71■□□□□ 0.11
NPHP4-203ENST00000378169 TNPO1Q92973 898 aaKnown RBP15.71■□□□□ 0.11
NPHP4-203ENST00000378169 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.71■□□□□ 0.11
NPHP4-203ENST00000378169 METTL24Q5JXM2 366 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
NPHP4-203ENST00000378169 ECHDC1Q9NTX5 307 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 YEATS2Q9ULM3 1422 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 GCP02774 474 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 SART3Q15020 963 aaKnown RBP15.7■□□□□ 0.1
NPHP4-203ENST00000378169 ANKRD1Q15327 319 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 MAGI2Q86UL8 1455 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 ATP10AO60312 1499 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 KINO60870 393 aaKnown RBP15.7■□□□□ 0.1
NPHP4-203ENST00000378169 HSPA2P54652 639 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 G2E3Q7L622 706 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 RHPN1Q8TCX5 695 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 KRT85P78386 507 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 TBX22Q9Y458 520 aa15.7■□□□□ 0.1
NPHP4-203ENST00000378169 PDE1AP54750 535 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 SMC5Q8IY18 1101 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 TSPY26PQ9H489 355 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 COPS6Q7L5N1 327 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 ABCF2Q9UG63 623 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 RNF123Q5XPI4 1314 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 STK38Q15208 465 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 TRIM5Q9C035 493 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 SAMD9LQ8IVG5 1584 aa15.69■□□□□ 0.1
NPHP4-203ENST00000378169 CCAR2Q8N163 923 aaKnown RBP15.68■□□□□ 0.1
NPHP4-203ENST00000378169 GDPD2Q9HCC8 539 aa15.68■□□□□ 0.1
NPHP4-203ENST00000378169 IFIT1P09914 478 aaKnown RBP15.68■□□□□ 0.1
NPHP4-203ENST00000378169 ANKRD13DQ6ZTN6 518 aa15.68■□□□□ 0.1
NPHP4-203ENST00000378169 SNRKQ9NRH2 765 aa15.68■□□□□ 0.1
NPHP4-203ENST00000378169 UGGT1Q9NYU2 1555 aa15.68■□□□□ 0.1
NPHP4-203ENST00000378169 XAGE3Q8WTP9 111 aa15.68■□□□□ 0.1
NPHP4-203ENST00000378169 PHAXQ9H814 394 aaKnown RBP15.68■□□□□ 0.1
NPHP4-203ENST00000378169 ME1P48163 572 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 FAM13BQ9NYF5 915 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 ARHGEF5Q12774 1597 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 LTKP29376 864 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 ORAI2Q96SN7 254 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 ZBTB7BO15156 539 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-203ENST00000378169 HOXC9P31274 260 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 HSP90AA2PQ14568 343 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-203ENST00000378169 TRIM34Q9BYJ4 488 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 SYCE3A1L190 88 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 CEP85Q6P2H3 762 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 NFATC2IPQ8NCF5 419 aa15.67■□□□□ 0.1
NPHP4-203ENST00000378169 PA2G4Q9UQ80 394 aaKnown RBP15.67■□□□□ 0.1
NPHP4-203ENST00000378169 PPFIA3O75145 1194 aa15.66■□□□□ 0.1
NPHP4-203ENST00000378169 SNRPA1P09661 255 aaKnown RBP15.66■□□□□ 0.1
NPHP4-203ENST00000378169 CWF19L2Q2TBE0 894 aaKnown RBP15.66■□□□□ 0.1
NPHP4-203ENST00000378169 SPC24Q8NBT2 197 aa15.66■□□□□ 0.1
NPHP4-203ENST00000378169 IFIT5Q13325 482 aaKnown RBP15.66■□□□□ 0.1
NPHP4-203ENST00000378169 NUP133Q8WUM0 1156 aa15.66■□□□□ 0.1
NPHP4-203ENST00000378169 TRMT112Q9UI30 125 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms