RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FLIIQ13045 1269 aa14.81□□□□□ -0.04
CLIP3-201ENST00000360535 EYA1Q99502 592 aa14.81□□□□□ -0.04
CLIP3-201ENST00000360535 ARID3AQ99856 593 aa14.81□□□□□ -0.04
CLIP3-201ENST00000360535 RGS12O14924 1447 aa14.8□□□□□ -0.04
CLIP3-201ENST00000360535 CCT4P50991 539 aaKnown RBP14.8□□□□□ -0.04
CLIP3-201ENST00000360535 NLRP6P59044 892 aa14.8□□□□□ -0.04
CLIP3-201ENST00000360535 KIAA1211Q6ZU35 1233 aa14.8□□□□□ -0.04
CLIP3-201ENST00000360535 CWC22Q9HCG8 908 aaKnown RBP14.8□□□□□ -0.04
CLIP3-201ENST00000360535 TMEM63CQ9P1W3 806 aa14.79□□□□□ -0.04
CLIP3-201ENST00000360535 MCCP23508 829 aa14.79□□□□□ -0.04
CLIP3-201ENST00000360535 GLIPR1L2Q4G1C9 344 aa14.79□□□□□ -0.04
CLIP3-201ENST00000360535 ESYT1Q9BSJ8 1104 aa14.79□□□□□ -0.04
CLIP3-201ENST00000360535 ZSCAN30Q86W11 494 aa14.78□□□□□ -0.04
CLIP3-201ENST00000360535 ANXA1P04083 346 aa14.78□□□□□ -0.04
CLIP3-201ENST00000360535 XPCQ01831 940 aaPredicted RBP14.78□□□□□ -0.04
CLIP3-201ENST00000360535 SURF6O75683 361 aaKnown RBP14.77□□□□□ -0.04
CLIP3-201ENST00000360535 LTKP29376 864 aa14.77□□□□□ -0.04
CLIP3-201ENST00000360535 CYP2E1P05181 493 aaPredicted RBP14.77□□□□□ -0.04
CLIP3-201ENST00000360535 RBM10P98175 930 aaKnown RBP14.77□□□□□ -0.04
CLIP3-201ENST00000360535 RBM33Q96EV2 1170 aaKnown RBP14.77□□□□□ -0.04
CLIP3-201ENST00000360535 PHAXQ9H814 394 aaKnown RBP14.77□□□□□ -0.04
CLIP3-201ENST00000360535 R3HCC1Q9Y3T6 440 aaKnown RBP14.77□□□□□ -0.04
CLIP3-201ENST00000360535 PTMAP06454 111 aaKnown RBP14.76□□□□□ -0.05
CLIP3-201ENST00000360535 CCDC30Q5VVM6 783 aa14.76□□□□□ -0.05
CLIP3-201ENST00000360535 DDX54Q8TDD1 881 aaKnown RBP14.76□□□□□ -0.05
CLIP3-201ENST00000360535 KIF24Q5T7B8 1368 aa14.76□□□□□ -0.05
CLIP3-201ENST00000360535 UBTFL1P0CB47 393 aaPredicted RBP14.76□□□□□ -0.05
CLIP3-201ENST00000360535 CHMLP26374 656 aa14.76□□□□□ -0.05
CLIP3-201ENST00000360535 IL25Q9H293 177 aa14.76□□□□□ -0.05
CLIP3-201ENST00000360535 SETD1BQ9UPS6 1966 aaKnown RBP14.75□□□□□ -0.05
CLIP3-201ENST00000360535 GNAI3P08754 354 aa14.75□□□□□ -0.05
CLIP3-201ENST00000360535 ZNF445P59923 1031 aa14.75□□□□□ -0.05
CLIP3-201ENST00000360535 PLCB2Q00722 1185 aa14.75□□□□□ -0.05
CLIP3-201ENST00000360535 KIAA0232Q92628 1395 aa14.75□□□□□ -0.05
CLIP3-201ENST00000360535 OS9Q13438 667 aaPredicted RBP14.75□□□□□ -0.05
CLIP3-201ENST00000360535 HDGFL1Q5TGJ6 251 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 CLEC17AQ6ZS10 378 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 PPP1R9BQ96SB3 815 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 AMOTL2Q9Y2J4 779 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 DLC1Q96QB1 1528 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 CRB1P82279 1406 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 CPA1P15085 419 aa14.74□□□□□ -0.05
CLIP3-201ENST00000360535 RIMS1Q86UR5 1692 aaKnown RBP14.73□□□□□ -0.05
CLIP3-201ENST00000360535 GNAT3A8MTJ3 354 aa14.73□□□□□ -0.05
CLIP3-201ENST00000360535 GADD45BO75293 160 aaPredicted RBP14.73□□□□□ -0.05
CLIP3-201ENST00000360535 ATP8B2P98198 1209 aa14.73□□□□□ -0.05
CLIP3-201ENST00000360535 RIMBP3CA6NJZ7 1639 aa14.73□□□□□ -0.05
CLIP3-201ENST00000360535 RIMBP3BA6NNM3 1639 aa14.73□□□□□ -0.05
CLIP3-201ENST00000360535 RIMBP3Q9UFD9 1639 aa14.73□□□□□ -0.05
CLIP3-201ENST00000360535 SRGAP3O43295 1099 aa14.72□□□□□ -0.05
CLIP3-201ENST00000360535 CWC27Q6UX04 472 aaKnown RBP14.72□□□□□ -0.05
CLIP3-201ENST00000360535 PPP1R42Q7Z4L9 355 aa14.72□□□□□ -0.05
CLIP3-201ENST00000360535 SPG7Q9UQ90 795 aa14.72□□□□□ -0.05
CLIP3-201ENST00000360535 ABTB2Q8N961 1025 aa14.72□□□□□ -0.05
CLIP3-201ENST00000360535 IL17REQ8NFR9 667 aa14.72□□□□□ -0.05
CLIP3-201ENST00000360535 USP44Q9H0E7 712 aa14.71□□□□□ -0.05
CLIP3-201ENST00000360535 LRSAM1Q6UWE0 723 aa14.71□□□□□ -0.05
CLIP3-201ENST00000360535 USP6P35125 1406 aa14.71□□□□□ -0.06
CLIP3-201ENST00000360535 FAM13BQ9NYF5 915 aa14.71□□□□□ -0.06
CLIP3-201ENST00000360535 PLEKHG3A1L390 1219 aa14.7□□□□□ -0.06
CLIP3-201ENST00000360535 OSBPL3Q9H4L5 887 aa14.7□□□□□ -0.06
CLIP3-201ENST00000360535 TNRQ92752 1358 aa14.7□□□□□ -0.06
CLIP3-201ENST00000360535 PPP6R1Q9UPN7 881 aa14.7□□□□□ -0.06
CLIP3-201ENST00000360535 NBPF7P0C2Y1 421 aaPredicted RBP14.69□□□□□ -0.06
CLIP3-201ENST00000360535 TAF7Q15545 349 aaPredicted RBP14.69□□□□□ -0.06
CLIP3-201ENST00000360535 ZNF830Q96NB3 372 aaPredicted RBP14.69□□□□□ -0.06
CLIP3-201ENST00000360535 EID1Q9Y6B2 187 aa14.69□□□□□ -0.06
CLIP3-201ENST00000360535 USP48Q86UV5 1035 aa14.69□□□□□ -0.06
CLIP3-201ENST00000360535 CHMP3Q9Y3E7 222 aa14.69□□□□□ -0.06
CLIP3-201ENST00000360535 ITSN1Q15811 1721 aa14.69□□□□□ -0.06
CLIP3-201ENST00000360535 FLT4P35916 1363 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 BRD1O95696 1058 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 DNTTIP2Q5QJE6 756 aaKnown RBP14.68□□□□□ -0.06
CLIP3-201ENST00000360535 LMOD2Q6P5Q4 547 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 FIBPO43427 364 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 KCNQ3O43525 872 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 TMEM2Q9UHN6 1383 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 SRCIN1Q9C0H9 1055 aa14.68□□□□□ -0.06
CLIP3-201ENST00000360535 OVOS2A0A0J9YW53 1432 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 OVOS2Q6IE36 1432 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 PI4KAP2A4QPH2 592 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 MCM2P49736 904 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 PI4KAP1Q8N8J0 262 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 RHPN1Q8TCX5 695 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 TSPY26PQ9H489 355 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 LGR6Q9HBX8 967 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 CNPY2Q9Y2B0 182 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 MBD3O95983 291 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 ZMYND15Q9H091 742 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 CHPF2Q9P2E5 772 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 IBTKQ9P2D0 1353 aaPredicted RBP14.67□□□□□ -0.06
CLIP3-201ENST00000360535 NRXN3Q9Y4C0 1643 aa14.67□□□□□ -0.06
CLIP3-201ENST00000360535 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.67□□□□□ -0.06
CLIP3-201ENST00000360535 OFD1O75665 1012 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 HOXC9P31274 260 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 MON2Q7Z3U7 1717 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 CEP170BQ9Y4F5 1589 aaPredicted RBP14.66□□□□□ -0.06
CLIP3-201ENST00000360535 RRP9O43818 475 aaKnown RBP14.66□□□□□ -0.06
CLIP3-201ENST00000360535 RASEFQ8IZ41 740 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 SOS1Q07889 1333 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms