RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 MYL6BP14649 208 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 ATP2B1P20020 1258 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 MX1P20591 662 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 IKQ13123 557 aaPredicted RBP13.84□□□□□ -0.19
COL9A1-202ENST00000357250 CCDC112Q8NEF3 446 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 FMNL2Q96PY5 1086 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 AKAP2Q9Y2D5 859 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 PTPRCP08575 1304 aa13.83□□□□□ -0.19
COL9A1-202ENST00000357250 DUOX2Q9NRD8 1548 aa13.83□□□□□ -0.2
COL9A1-202ENST00000357250 CEP170Q5SW79 1584 aa13.83□□□□□ -0.2
COL9A1-202ENST00000357250 ITSN2Q9NZM3 1697 aa13.83□□□□□ -0.2
COL9A1-202ENST00000357250 SOGA3Q5TF21 947 aa13.83□□□□□ -0.2
COL9A1-202ENST00000357250 U3KPZ7 1027 aaPredicted RBP13.83□□□□□ -0.2
COL9A1-202ENST00000357250 RALGAPBQ86X10 1494 aa13.83□□□□□ -0.2
COL9A1-202ENST00000357250 ERLIN1O75477 346 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 SCAND2PQ9GZW5 306 aaPredicted RBP13.82□□□□□ -0.2
COL9A1-202ENST00000357250 PRDM11Q9NQV5 511 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 CEP131Q9UPN4 1083 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 HMGB1P09429 215 aaKnown RBP13.82□□□□□ -0.2
COL9A1-202ENST00000357250 TAF7Q15545 349 aaPredicted RBP13.82□□□□□ -0.2
COL9A1-202ENST00000357250 SIL1Q9H173 461 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 IMMTQ16891 758 aaKnown RBP13.82□□□□□ -0.2
COL9A1-202ENST00000357250 TTC21BQ7Z4L5 1316 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 ERLIN2O94905 339 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 KRT18P05783 430 aaKnown RBP13.82□□□□□ -0.2
COL9A1-202ENST00000357250 UBAC1Q9BSL1 405 aa13.82□□□□□ -0.2
COL9A1-202ENST00000357250 ESPNB1AK53 854 aa13.81□□□□□ -0.2
COL9A1-202ENST00000357250 NUTM2BA6NNL0 878 aaPredicted RBP13.81□□□□□ -0.2
COL9A1-202ENST00000357250 NUTM2EB1AL46 878 aaPredicted RBP13.81□□□□□ -0.2
COL9A1-202ENST00000357250 SYCP1Q15431 976 aa13.81□□□□□ -0.2
COL9A1-202ENST00000357250 NUTM2AQ8IVF1 878 aaPredicted RBP13.81□□□□□ -0.2
COL9A1-202ENST00000357250 ACEP12821 1306 aa13.81□□□□□ -0.2
COL9A1-202ENST00000357250 F6X3S4 739 aa13.81□□□□□ -0.2
COL9A1-202ENST00000357250 MAP3K11Q16584 847 aa13.81□□□□□ -0.2
COL9A1-202ENST00000357250 HSP90AB2PQ58FF8 381 aa13.81□□□□□ -0.2
COL9A1-202ENST00000357250 CWC27Q6UX04 472 aaKnown RBP13.81□□□□□ -0.2
COL9A1-202ENST00000357250 BMP2KQ9NSY1 1161 aaPredicted RBP13.81□□□□□ -0.2
COL9A1-202ENST00000357250 TARBP1Q13395 1621 aaKnown RBP13.8□□□□□ -0.2
COL9A1-202ENST00000357250 STARD3NLO95772 234 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 IQCEQ6IPM2 695 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 MAP4K4O95819 1239 aaPredicted RBP13.8□□□□□ -0.2
COL9A1-202ENST00000357250 PDCL2Q8N4E4 241 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 CEBPZQ03701 1054 aaKnown RBP13.8□□□□□ -0.2
COL9A1-202ENST00000357250 BRPF3Q9ULD4 1205 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 PHF8Q9UPP1 1060 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 ZNF518AQ6AHZ1 1483 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 SAMD9Q5K651 1589 aa13.8□□□□□ -0.2
COL9A1-202ENST00000357250 CFAP65Q6ZU64 1925 aaKnown RBP13.79□□□□□ -0.2
COL9A1-202ENST00000357250 STK3Q13188 491 aa13.79□□□□□ -0.2
COL9A1-202ENST00000357250 UPF3BQ9BZI7 483 aaKnown RBP13.79□□□□□ -0.2
COL9A1-202ENST00000357250 PER1O15534 1290 aaPredicted RBP13.79□□□□□ -0.2
COL9A1-202ENST00000357250 EIF3JO75822 258 aaKnown RBP13.79□□□□□ -0.2
COL9A1-202ENST00000357250 ZNF287Q9HBT7 754 aa13.79□□□□□ -0.2
COL9A1-202ENST00000357250 IL1RAPL2Q9NP60 686 aa13.79□□□□□ -0.2
COL9A1-202ENST00000357250 ZSCAN30Q86W11 494 aa13.79□□□□□ -0.2
COL9A1-202ENST00000357250 CCDC196A0A1B0GTZ2 297 aa13.79□□□□□ -0.2
COL9A1-202ENST00000357250 TDO2P48775 406 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 FKBP4Q02790 459 aaKnown RBP eCLIP13.78□□□□□ -0.2
COL9A1-202ENST00000357250 ABCC2Q92887 1545 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 IGHMBP2P38935 993 aaKnown RBP13.78□□□□□ -0.2
COL9A1-202ENST00000357250 TNNQ9UQP3 1299 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 EXOC6BQ9Y2D4 811 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 ANKRD36BQ8N2N9 1353 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 CTAGE5O15320 804 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 BMP2KLQ5H9B9 411 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 MPRIPQ6WCQ1 1025 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 LEKR1Q6ZMV7 388 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 SPC24Q8NBT2 197 aa13.78□□□□□ -0.2
COL9A1-202ENST00000357250 CASTP20810 708 aaKnown RBP13.77□□□□□ -0.2
COL9A1-202ENST00000357250 DNMT1P26358 1616 aaKnown RBP13.77□□□□□ -0.2
COL9A1-202ENST00000357250 HSP90AB3PQ58FF7 597 aa13.77□□□□□ -0.21
COL9A1-202ENST00000357250 ARHGAP45Q92619 1136 aa13.77□□□□□ -0.21
COL9A1-202ENST00000357250 PHAXQ9H814 394 aaKnown RBP13.77□□□□□ -0.21
COL9A1-202ENST00000357250 HYPKQ9NX55 129 aa13.77□□□□□ -0.21
COL9A1-202ENST00000357250 TRIM27P14373 513 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 BRPF1P55201 1214 aaPredicted RBP13.76□□□□□ -0.21
COL9A1-202ENST00000357250 CCDC191Q8NCU4 936 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 PTCD1O75127 700 aaKnown RBP13.76□□□□□ -0.21
COL9A1-202ENST00000357250 ZFYVE27Q5T4F4 411 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 CCDC183Q5T5S1 534 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 DEF6Q9H4E7 631 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 DBF4Q9UBU7 674 aaPredicted RBP13.76□□□□□ -0.21
COL9A1-202ENST00000357250 AIDAQ96BJ3 306 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 CCDC85AQ96PX6 553 aaPredicted RBP13.76□□□□□ -0.21
COL9A1-202ENST00000357250 ANO10Q9NW15 660 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 MTMR7Q9Y216 660 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 ZNF652Q9Y2D9 606 aa13.76□□□□□ -0.21
COL9A1-202ENST00000357250 GOLGA6L10A6NI86 522 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 SMARCA5O60264 1052 aaPredicted RBP13.75□□□□□ -0.21
COL9A1-202ENST00000357250 NUP133Q8WUM0 1156 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 TNRQ92752 1358 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 H0YHG0 523 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 PIP4K2BP78356 416 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 WWC2Q6AWC2 1192 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 DNAAF4Q8WXU2 420 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 CAVIN2O95810 425 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 ANXA1P04083 346 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 TTLL5Q6EMB2 1281 aa13.75□□□□□ -0.21
COL9A1-202ENST00000357250 SPINK5Q9NQ38 1064 aaPredicted RBP13.75□□□□□ -0.21
COL9A1-202ENST00000357250 LIMCH1Q9UPQ0 1083 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms