RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GLRX3O76003 335 aaKnown RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 MYZAPP0CAP1 466 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 NFE2L2Q16236 605 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 CCDC83Q8IWF9 413 aa7.54□□□□□ -1.2
UPF2-201ENST00000356352 CRACR2BQ8N4Y2 399 aaPredicted RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 CCDC97Q96F63 343 aaPredicted RBP7.54□□□□□ -1.2
UPF2-201ENST00000356352 POLR3DP05423 398 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 METTL24Q5JXM2 366 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 LARP1Q6PKG0 1096 aaKnown RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 CWC27Q6UX04 472 aaKnown RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 ANO10Q9NW15 660 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 ABCC11Q96J66 1382 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 SHTN1A0MZ66 631 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 CTAGE5O15320 804 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 IDH1O75874 414 aaKnown RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 AMOTQ4VCS5 1084 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 STK11IPQ8N1F8 1099 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 FEZ1Q99689 392 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 BCL11BQ9C0K0 894 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 CCDC141Q6ZP82 1450 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 NUTM2BA6NNL0 878 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 NUTM2EB1AL46 878 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 MAP4K4O95819 1239 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 TAF3Q5VWG9 929 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 NUTM2AQ8IVF1 878 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 SCLT1Q96NL6 688 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 CRACR2AQ9BSW2 395 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 IFT140Q96RY7 1462 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 ZPR1O75312 459 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 CTCFLQ8NI51 663 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 CCDC12Q8WUD4 166 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 CCDC102AQ96A19 550 aa7.53□□□□□ -1.2
UPF2-201ENST00000356352 SCAND2PQ9GZW5 306 aaPredicted RBP7.53□□□□□ -1.2
UPF2-201ENST00000356352 KIF5CO60282 957 aa7.52□□□□□ -1.2
UPF2-201ENST00000356352 MAP2K1Q02750 393 aaPredicted RBP7.52□□□□□ -1.2
UPF2-201ENST00000356352 CFAP100Q494V2 611 aa7.52□□□□□ -1.2
UPF2-201ENST00000356352 AQRO60306 1485 aaKnown RBP eCLIP7.52□□□□□ -1.212e-6■□□□□ 10.6
UPF2-201ENST00000356352 POTEB2H3BUK9 544 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 SLC5A1P13866 664 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 CASTP20810 708 aaKnown RBP7.52□□□□□ -1.21
UPF2-201ENST00000356352 MAP3K12Q12852 859 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 CDCA7LQ96GN5 454 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 MKNK2Q9HBH9 465 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 USO1O60763 962 aaKnown RBP7.52□□□□□ -1.21
UPF2-201ENST00000356352 BAG4O95429 457 aaKnown RBP7.52□□□□□ -1.21
UPF2-201ENST00000356352 FAM193AP78312 1265 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 CETN1Q12798 172 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 ALDH1L2Q3SY69 923 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 STXBP4Q6ZWJ1 553 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 CACNA2D4Q7Z3S7 1137 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 AFAP1Q8N556 730 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 UBXN4Q92575 508 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 TAOK3Q9H2K8 898 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 TMOD3Q9NYL9 352 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 A0A087WZG4 1122 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 DYDC1Q8WWB3 177 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 SFPQP23246 707 aaKnown RBP eCLIP7.52□□□□□ -1.21
UPF2-201ENST00000356352 IQCA1Q86XH1 822 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 MPHOSPH6Q99547 160 aaKnown RBP7.52□□□□□ -1.21
UPF2-201ENST00000356352 LRRC27Q9C0I9 530 aa7.52□□□□□ -1.21
UPF2-201ENST00000356352 TTC21AQ8NDW8 1320 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 CASQ1P31415 396 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 SMC1AQ14683 1233 aaKnown RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 TMCO3Q6UWJ1 677 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 DZIP1Q86YF9 867 aaKnown RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 ANKRD18BA2A2Z9 1011 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 NEMFO60524 1076 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 BCAR3O75815 825 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 MX1P20591 662 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 AMPD3Q01432 767 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 FAM177A1Q8N128 213 aaPredicted RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 PPM1EQ8WY54 764 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 DDX12PQ92771 950 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 NAPBQ9H115 298 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 MRC2Q9UBG0 1479 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 TROQ12816 1431 aaPredicted RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 UQCRHLA0A096LP55 91 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 UQCRHP07919 91 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 MICALCLQ6ZW33 695 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 HOOK3Q86VS8 718 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 FAM114A1Q8IWE2 563 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 FERMT1Q9BQL6 677 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 SLC12A5Q9H2X9 1139 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 CCDC183Q5T5S1 534 aa7.51□□□□□ -1.21
UPF2-201ENST00000356352 GIGYF2Q6Y7W6 1299 aaKnown RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 ZNF444Q8N0Y2 327 aaPredicted RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 SUPT6HQ7KZ85 1726 aaKnown RBP7.51□□□□□ -1.21
UPF2-201ENST00000356352 YEATS4O95619 227 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 NF2P35240 595 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 SSRP1Q08945 709 aaKnown RBP7.5□□□□□ -1.21
UPF2-201ENST00000356352 NAA15Q9BXJ9 866 aaKnown RBP7.5□□□□□ -1.21
UPF2-201ENST00000356352 BACH2Q9BYV9 841 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 FAM107BQ9H098 131 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 TTF1Q15361 905 aaPredicted RBP7.5□□□□□ -1.21
UPF2-201ENST00000356352 ALS2CR12Q96Q35 445 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 EPRSP07814 1512 aaKnown RBP7.5□□□□□ -1.21
UPF2-201ENST00000356352 LRPPRCP42704 1394 aaKnown RBP7.5□□□□□ -1.21
UPF2-201ENST00000356352 LUZP1Q86V48 1076 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 FERMT2Q96AC1 680 aa7.5□□□□□ -1.21
UPF2-201ENST00000356352 ABCF2Q9UG63 623 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms