RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SNRPA1P09661 255 aaKnown RBP17.76■□□□□ 0.43
COL17A1-201ENST00000353479 BOLA2Q9H3K6 86 aa17.76■□□□□ 0.43
COL17A1-201ENST00000353479 CCDC69A6NI79 296 aa17.76■□□□□ 0.43
COL17A1-201ENST00000353479 ZSCAN29Q8IWY8 852 aaPredicted RBP17.76■□□□□ 0.43
COL17A1-201ENST00000353479 NUP133Q8WUM0 1156 aa17.76■□□□□ 0.43
COL17A1-201ENST00000353479 IL16Q14005 1332 aa17.76■□□□□ 0.43
COL17A1-201ENST00000353479 ANKRD1Q15327 319 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 PI4KAP2A4QPH2 592 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 IFIT1P09914 478 aaKnown RBP17.75■□□□□ 0.43
COL17A1-201ENST00000353479 BLOC1S2Q6QNY1 142 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 PI4KAP1Q8N8J0 262 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 ANO8Q9HCE9 1232 aaPredicted RBP17.75■□□□□ 0.43
COL17A1-201ENST00000353479 GLRX3O76003 335 aaKnown RBP17.75■□□□□ 0.43
COL17A1-201ENST00000353479 AIDAQ96BJ3 306 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 JAKMIP1Q96N16 626 aaKnown RBP17.75■□□□□ 0.43
COL17A1-201ENST00000353479 C8orf37Q96NL8 207 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 CCDC8Q9H0W5 538 aaPredicted RBP17.75■□□□□ 0.43
COL17A1-201ENST00000353479 ANKIB1Q9P2G1 1089 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 CTNNA3Q9UI47 895 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 ADGRL2O95490 1459 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 SDF4Q9BRK5 362 aa17.75■□□□□ 0.43
COL17A1-201ENST00000353479 A0A1W2PP64 1363 aa17.74■□□□□ 0.43
COL17A1-201ENST00000353479 CAVIN4Q5BKX8 364 aa17.74■□□□□ 0.43
COL17A1-201ENST00000353479 NFKBIBQ15653 356 aa17.74■□□□□ 0.43
COL17A1-201ENST00000353479 ACSBG1Q96GR2 724 aa17.74■□□□□ 0.43
COL17A1-201ENST00000353479 PUS7Q96PZ0 661 aaKnown RBP17.74■□□□□ 0.43
COL17A1-201ENST00000353479 CARD14Q9BXL6 1004 aa17.74■□□□□ 0.43
COL17A1-201ENST00000353479 CEBPZQ03701 1054 aaKnown RBP17.74■□□□□ 0.43
COL17A1-201ENST00000353479 SLC39A6Q13433 755 aa17.74■□□□□ 0.43
COL17A1-201ENST00000353479 AK7Q96M32 723 aa17.73■□□□□ 0.43
COL17A1-201ENST00000353479 ARHGEF12Q9NZN5 1544 aa17.73■□□□□ 0.43
COL17A1-201ENST00000353479 ANKRD18BA2A2Z9 1011 aa17.73■□□□□ 0.43
COL17A1-201ENST00000353479 PIK3R4Q99570 1358 aa17.73■□□□□ 0.43
COL17A1-201ENST00000353479 PDRG1Q9NUG6 133 aa17.73■□□□□ 0.43
COL17A1-201ENST00000353479 FLT4P35916 1363 aa17.73■□□□□ 0.43
COL17A1-201ENST00000353479 SKAP1Q86WV1 359 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 TRIM22Q8IYM9 498 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 ARID3AQ99856 593 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 TRPM2O94759 1503 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 GCP02774 474 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 CWC25Q9NXE8 425 aaPredicted RBP17.72■□□□□ 0.43
COL17A1-201ENST00000353479 UHRF1BP1Q6BDS2 1440 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 FIBPO43427 364 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 UBE3BQ7Z3V4 1068 aa17.72■□□□□ 0.43
COL17A1-201ENST00000353479 JARID2Q92833 1246 aaPredicted RBP17.72■□□□□ 0.43
COL17A1-201ENST00000353479 K7ELQ4 463 aaPredicted RBP17.71■□□□□ 0.43
COL17A1-201ENST00000353479 AKAP4Q5JQC9 854 aa17.71■□□□□ 0.43
COL17A1-201ENST00000353479 RPGRQ92834 1020 aaKnown RBP17.71■□□□□ 0.43
COL17A1-201ENST00000353479 UBAC1Q9BSL1 405 aa17.71■□□□□ 0.43
COL17A1-201ENST00000353479 MTHFSDQ2M296 383 aaKnown RBP17.71■□□□□ 0.43
COL17A1-201ENST00000353479 CHPF2Q9P2E5 772 aa17.71■□□□□ 0.43
COL17A1-201ENST00000353479 PARD3Q8TEW0 1356 aa17.71■□□□□ 0.43
COL17A1-201ENST00000353479 NEO1Q92859 1461 aa17.7■□□□□ 0.42
COL17A1-201ENST00000353479 MAGI3Q5TCQ9 1506 aa17.7■□□□□ 0.42
COL17A1-201ENST00000353479 PRPF40AO75400 957 aaKnown RBP17.7■□□□□ 0.42
COL17A1-201ENST00000353479 STK38Q15208 465 aa17.7■□□□□ 0.42
COL17A1-201ENST00000353479 ZNF396Q96N95 335 aaPredicted RBP17.69■□□□□ 0.42
COL17A1-201ENST00000353479 IMMTQ16891 758 aaKnown RBP17.69■□□□□ 0.42
COL17A1-201ENST00000353479 ANKRD13DQ6ZTN6 518 aa17.69■□□□□ 0.42
COL17A1-201ENST00000353479 SLC5A1P13866 664 aa17.69■□□□□ 0.42
COL17A1-201ENST00000353479 CCAR1Q8IX12 1150 aaKnown RBP17.69■□□□□ 0.42
COL17A1-201ENST00000353479 KRT32Q14532 448 aa17.69■□□□□ 0.42
COL17A1-201ENST00000353479 DDB1Q16531 1140 aa17.69■□□□□ 0.42
COL17A1-201ENST00000353479 ZNF219Q9P2Y4 722 aaPredicted RBP17.69■□□□□ 0.42
COL17A1-201ENST00000353479 POLR3AO14802 1390 aaPredicted RBP17.68■□□□□ 0.42
COL17A1-201ENST00000353479 IL2RBP14784 551 aa17.68■□□□□ 0.42
COL17A1-201ENST00000353479 OLFM4Q6UX06 510 aa17.68■□□□□ 0.42
COL17A1-201ENST00000353479 LMTK3Q96Q04 1460 aa17.68■□□□□ 0.42
COL17A1-201ENST00000353479 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.68■□□□□ 0.42
COL17A1-201ENST00000353479 ZFYVE16Q7Z3T8 1539 aa17.68■□□□□ 0.42
COL17A1-201ENST00000353479 IPO7O95373 1038 aaKnown RBP17.68■□□□□ 0.42
COL17A1-201ENST00000353479 CASTP20810 708 aaKnown RBP17.68■□□□□ 0.42
COL17A1-201ENST00000353479 RFC4P35249 363 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 EYA1Q99502 592 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 BCL11BQ9C0K0 894 aaPredicted RBP17.67■□□□□ 0.42
COL17A1-201ENST00000353479 KINO60870 393 aaKnown RBP17.67■□□□□ 0.42
COL17A1-201ENST00000353479 LARP1BQ659C4 914 aaKnown RBP17.67■□□□□ 0.42
COL17A1-201ENST00000353479 C8orf58Q8NAV2 365 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 ATP6V1AP38606 617 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 CAVIN1Q6NZI2 390 aaKnown RBP17.67■□□□□ 0.42
COL17A1-201ENST00000353479 PPP1R42Q7Z4L9 355 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 XAGE3Q8WTP9 111 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 HOXC9P31274 260 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 LDHAL6AQ6ZMR3 332 aa17.67■□□□□ 0.42
COL17A1-201ENST00000353479 PRPF40BQ6NWY9 871 aaKnown RBP17.66■□□□□ 0.42
COL17A1-201ENST00000353479 CDK5RAP3Q96JB5 506 aa17.66■□□□□ 0.42
COL17A1-201ENST00000353479 PIP4K2AP48426 406 aaPredicted RBP17.66■□□□□ 0.42
COL17A1-201ENST00000353479 ORAI2Q96SN7 254 aa17.66■□□□□ 0.42
COL17A1-201ENST00000353479 USP5P45974 858 aa17.66■□□□□ 0.42
COL17A1-201ENST00000353479 MAP3K19Q56UN5 1328 aa17.66■□□□□ 0.42
COL17A1-201ENST00000353479 CCAR2Q8N163 923 aaKnown RBP17.66■□□□□ 0.42
COL17A1-201ENST00000353479 TMOD2Q9NZR1 351 aa17.66■□□□□ 0.42
COL17A1-201ENST00000353479 MINDY4BA8MYZ0 360 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 COPS6Q7L5N1 327 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 DZIP1Q86YF9 867 aaKnown RBP17.65■□□□□ 0.42
COL17A1-201ENST00000353479 TRAK2O60296 914 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 MAP3K12Q12852 859 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 NFATC2IPQ8NCF5 419 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 RNF214Q8ND24 703 aa17.65■□□□□ 0.42
COL17A1-201ENST00000353479 NAT10Q9H0A0 1025 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms