RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 PDZRN3Q9UPQ7 1066 aa16.34■□□□□ 0.21
COL18A1-201ENST00000342220 ARHGEF10O15013 1369 aa16.33■□□□□ 0.21
COL18A1-201ENST00000342220 MAP3K5Q99683 1374 aa16.33■□□□□ 0.2
COL18A1-201ENST00000342220 CABP4P57796 275 aa16.33■□□□□ 0.2
COL18A1-201ENST00000342220 CHPF2Q9P2E5 772 aa16.32■□□□□ 0.2
COL18A1-201ENST00000342220 FMN2Q9NZ56 1722 aa16.32■□□□□ 0.2
COL18A1-201ENST00000342220 ZNF853P0CG23 659 aa16.32■□□□□ 0.2
COL18A1-201ENST00000342220 FAM43AQ8N2R8 423 aa16.32■□□□□ 0.2
COL18A1-201ENST00000342220 API5Q9BZZ5 524 aaKnown RBP16.32■□□□□ 0.2
COL18A1-201ENST00000342220 SPG7Q9UQ90 795 aa16.32■□□□□ 0.2
COL18A1-201ENST00000342220 CCDC30Q5VVM6 783 aa16.31■□□□□ 0.2
COL18A1-201ENST00000342220 MEIS3Q99687 375 aa16.31■□□□□ 0.2
COL18A1-201ENST00000342220 RNMTO43148 476 aaKnown RBP16.3■□□□□ 0.2
COL18A1-201ENST00000342220 SEC24BO95487 1268 aa16.3■□□□□ 0.2
COL18A1-201ENST00000342220 AKAP4Q5JQC9 854 aa16.3■□□□□ 0.2
COL18A1-201ENST00000342220 FLIIQ13045 1269 aa16.3■□□□□ 0.2
COL18A1-201ENST00000342220 ALDH1L2Q3SY69 923 aa16.3■□□□□ 0.2
COL18A1-201ENST00000342220 AMOTQ4VCS5 1084 aa16.3■□□□□ 0.2
COL18A1-201ENST00000342220 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
COL18A1-201ENST00000342220 HSP90AA2PQ14568 343 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-201ENST00000342220 USP19O94966 1318 aa16.29■□□□□ 0.2
COL18A1-201ENST00000342220 CT47B1P0C2W7 299 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-201ENST00000342220 C8orf37Q96NL8 207 aa16.29■□□□□ 0.2
COL18A1-201ENST00000342220 IFNL2Q8IZJ0 200 aa16.27■□□□□ 0.2
COL18A1-201ENST00000342220 MARF1Q9Y4F3 1742 aaKnown RBP16.27■□□□□ 0.2
COL18A1-201ENST00000342220 ACSBG1Q96GR2 724 aa16.27■□□□□ 0.2
COL18A1-201ENST00000342220 PI4KAP2A4QPH2 592 aa16.27■□□□□ 0.19
COL18A1-201ENST00000342220 SMARCA5O60264 1052 aaPredicted RBP16.27■□□□□ 0.19
COL18A1-201ENST00000342220 FRAT2O75474 233 aaPredicted RBP16.27■□□□□ 0.19
COL18A1-201ENST00000342220 PI4KAP1Q8N8J0 262 aa16.27■□□□□ 0.19
COL18A1-201ENST00000342220 PIK3C2AO00443 1686 aa16.26■□□□□ 0.19
COL18A1-201ENST00000342220 ZCRB1Q8TBF4 217 aaKnown RBP16.26■□□□□ 0.19
COL18A1-201ENST00000342220 VIRMAQ69YN4 1812 aaKnown RBP16.26■□□□□ 0.19
COL18A1-201ENST00000342220 PROSER3Q2NL68 480 aa16.26■□□□□ 0.19
COL18A1-201ENST00000342220 CYP27B1O15528 508 aa16.26■□□□□ 0.19
COL18A1-201ENST00000342220 FAM182BQ5T319 152 aa16.26■□□□□ 0.19
COL18A1-201ENST00000342220 NGLY1Q96IV0 654 aa16.25■□□□□ 0.19
COL18A1-201ENST00000342220 NAP1L5Q96NT1 182 aaPredicted RBP16.25■□□□□ 0.19
COL18A1-201ENST00000342220 PEAK1Q9H792 1746 aa16.25■□□□□ 0.19
COL18A1-201ENST00000342220 OS9Q13438 667 aaPredicted RBP16.24■□□□□ 0.19
COL18A1-201ENST00000342220 EXOC6BQ9Y2D4 811 aa16.24■□□□□ 0.19
COL18A1-201ENST00000342220 TNS3Q68CZ2 1445 aa16.24■□□□□ 0.19
COL18A1-201ENST00000342220 TOM1O60784 492 aa16.24■□□□□ 0.19
COL18A1-201ENST00000342220 RIC3Q7Z5B4 369 aa16.24■□□□□ 0.19
COL18A1-201ENST00000342220 ZNF496Q96IT1 587 aaPredicted RBP16.24■□□□□ 0.19
COL18A1-201ENST00000342220 ZBTB40Q9NUA8 1239 aa16.23■□□□□ 0.19
COL18A1-201ENST00000342220 PHKG2P15735 406 aa16.23■□□□□ 0.19
COL18A1-201ENST00000342220 EIF4A1P60842 406 aaKnown RBP16.23■□□□□ 0.19
COL18A1-201ENST00000342220 C9orf78Q9NZ63 289 aaPredicted RBP16.23■□□□□ 0.19
COL18A1-201ENST00000342220 CHMP3Q9Y3E7 222 aa16.23■□□□□ 0.19
COL18A1-201ENST00000342220 IL2RBP14784 551 aa16.23■□□□□ 0.19
COL18A1-201ENST00000342220 TSHZ3Q63HK5 1081 aa16.23■□□□□ 0.19
COL18A1-201ENST00000342220 KDRP35968 1356 aa16.22■□□□□ 0.19
COL18A1-201ENST00000342220 ZBTB7BO15156 539 aaPredicted RBP16.22■□□□□ 0.19
COL18A1-201ENST00000342220 USP16Q9Y5T5 823 aa16.22■□□□□ 0.19
COL18A1-201ENST00000342220 FAM177BA6PVY3 158 aa16.22■□□□□ 0.19
COL18A1-201ENST00000342220 MFAP1P55081 439 aaKnown RBP16.22■□□□□ 0.19
COL18A1-201ENST00000342220 MEX3CQ5U5Q3 659 aaKnown RBP16.22■□□□□ 0.19
COL18A1-201ENST00000342220 ATP5J2-PTCD1G3V325 749 aa16.21■□□□□ 0.19
COL18A1-201ENST00000342220 CWF19L2Q2TBE0 894 aaKnown RBP16.21■□□□□ 0.19
COL18A1-201ENST00000342220 SPRYD3Q8NCJ5 442 aa16.21■□□□□ 0.19
COL18A1-201ENST00000342220 ZNF790Q6PG37 636 aa16.21■□□□□ 0.18
COL18A1-201ENST00000342220 C16orf71Q8IYS4 520 aaPredicted RBP16.21■□□□□ 0.18
COL18A1-201ENST00000342220 CCDC85AQ96PX6 553 aaPredicted RBP16.2■□□□□ 0.18
COL18A1-201ENST00000342220 RBM10P98175 930 aaKnown RBP16.2■□□□□ 0.18
COL18A1-201ENST00000342220 LRRFIP2Q9Y608 721 aaKnown RBP16.2■□□□□ 0.18
COL18A1-201ENST00000342220 CRB1P82279 1406 aa16.19■□□□□ 0.18
COL18A1-201ENST00000342220 HSP90AA1P07900 732 aaKnown RBP16.19■□□□□ 0.18
COL18A1-201ENST00000342220 UBTFL1P0CB47 393 aaPredicted RBP16.19■□□□□ 0.18
COL18A1-201ENST00000342220 MAP3K2Q9Y2U5 619 aa16.19■□□□□ 0.18
COL18A1-201ENST00000342220 IL1RAPL2Q9NP60 686 aa16.19■□□□□ 0.18
COL18A1-201ENST00000342220 SOS2Q07890 1332 aaPredicted RBP16.19■□□□□ 0.18
COL18A1-201ENST00000342220 RTL1A6NKG5 1358 aa16.19■□□□□ 0.18
COL18A1-201ENST00000342220 KCNQ4P56696 695 aa16.18■□□□□ 0.18
COL18A1-201ENST00000342220 HTATSF1O43719 755 aaKnown RBP16.18■□□□□ 0.18
COL18A1-201ENST00000342220 AAMPQ13685 434 aa16.18■□□□□ 0.18
COL18A1-201ENST00000342220 NCBP3Q53F19 620 aaKnown RBP16.18■□□□□ 0.18
COL18A1-201ENST00000342220 ZBTB3Q9H5J0 574 aa16.18■□□□□ 0.18
COL18A1-201ENST00000342220 SLC52A2Q9HAB3 445 aa16.18■□□□□ 0.18
COL18A1-201ENST00000342220 PXDNQ92626 1479 aa16.18■□□□□ 0.18
COL18A1-201ENST00000342220 COPS6Q7L5N1 327 aa16.18■□□□□ 0.18
COL18A1-201ENST00000342220 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 A1BGP04217 495 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 SRCIN1Q9C0H9 1055 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 SLKQ9H2G2 1235 aaPredicted RBP16.17■□□□□ 0.18
COL18A1-201ENST00000342220 SIL1Q9H173 461 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 TMOD3Q9NYL9 352 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 RGPD1P0DJD0 1748 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 EXOC5O00471 708 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 FAM98CQ17RN3 349 aaKnown RBP16.17■□□□□ 0.18
COL18A1-201ENST00000342220 XAGE3Q8WTP9 111 aa16.17■□□□□ 0.18
COL18A1-201ENST00000342220 GIGYF1O75420 1035 aaPredicted RBP16.16■□□□□ 0.18
COL18A1-201ENST00000342220 BECN1Q14457 450 aa16.16■□□□□ 0.18
COL18A1-201ENST00000342220 RRAGDQ9NQL2 400 aaPredicted RBP16.16■□□□□ 0.18
COL18A1-201ENST00000342220 OTUD7AQ8TE49 926 aaPredicted RBP16.16■□□□□ 0.18
COL18A1-201ENST00000342220 DCAF5Q96JK2 942 aa16.15■□□□□ 0.18
COL18A1-201ENST00000342220 DBF4Q9UBU7 674 aaPredicted RBP16.15■□□□□ 0.18
COL18A1-201ENST00000342220 MYD88Q99836 296 aa16.15■□□□□ 0.18
COL18A1-201ENST00000342220 CHMP4BQ9H444 224 aaKnown RBP16.15■□□□□ 0.18
COL18A1-201ENST00000342220 RRP9O43818 475 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms