RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CWC25Q9NXE8 425 aaPredicted RBP12.32□□□□□ -0.44
USP54-201ENST00000339859 LMTK2Q8IWU2 1503 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 FBLN1P23142 703 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 FANCIQ9NVI1 1328 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 TRIM29Q14134 588 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 METTL24Q5JXM2 366 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 NBPF6Q5VWK0 638 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 NBPF5PQ86XG9 351 aaPredicted RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 NBPF4Q96M43 638 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 RNF17Q9BXT8 1623 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 IFIT5Q13325 482 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 CDC5LQ99459 802 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 SPATA31E1Q6ZUB1 1445 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 MVPQ14764 893 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 ANKARQ7Z5J8 1434 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 SRGAP3O43295 1099 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 SPRYD3Q8NCJ5 442 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 EYA1Q99502 592 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 PTPRMP28827 1452 aa12.31□□□□□ -0.44
USP54-201ENST00000339859 NKTRP30414 1462 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 NCBP3Q53F19 620 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 NOL8Q76FK4 1167 aaKnown RBP12.31□□□□□ -0.44
USP54-201ENST00000339859 IFIT1P09914 478 aaKnown RBP12.3□□□□□ -0.44
USP54-201ENST00000339859 LNPKQ9C0E8 428 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 H3BQV1 296 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 IFFO2Q5TF58 517 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 ZBTB3Q9H5J0 574 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 C1orf115Q9H7X2 142 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 CLTCL1P53675 1640 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 ROBO2Q9HCK4 1378 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 RXRBP28702 533 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 FAM161AQ3B820 660 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 ZNF622Q969S3 477 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP54-201ENST00000339859 ATP7BP35670 1465 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 BCAR3O75815 825 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 NACAP1Q9BZK3 213 aa12.3□□□□□ -0.44
USP54-201ENST00000339859 SART3Q15020 963 aaKnown RBP12.3□□□□□ -0.44
USP54-201ENST00000339859 QTRT2Q9H974 415 aaKnown RBP12.29□□□□□ -0.44
USP54-201ENST00000339859 RNMTO43148 476 aaKnown RBP12.29□□□□□ -0.44
USP54-201ENST00000339859 CERKQ8TCT0 537 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 GBP4Q96PP9 640 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 SLC5A1P13866 664 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 MTHFSDQ2M296 383 aaKnown RBP12.29□□□□□ -0.44
USP54-201ENST00000339859 MAP3K2Q9Y2U5 619 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 PLA2R1Q13018 1463 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 GPTP24298 496 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 RPAP2Q8IXW5 612 aaPredicted RBP12.29□□□□□ -0.44
USP54-201ENST00000339859 CCNL1Q9UK58 526 aaPredicted RBP12.29□□□□□ -0.44
USP54-201ENST00000339859 CPLX1O14810 134 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 CDC45O75419 566 aa12.29□□□□□ -0.44
USP54-201ENST00000339859 MBIPQ9NS73 344 aa12.28□□□□□ -0.44
USP54-201ENST00000339859 AACSQ86V21 672 aa12.28□□□□□ -0.44
USP54-201ENST00000339859 CCAR1Q8IX12 1150 aaKnown RBP12.28□□□□□ -0.44
USP54-201ENST00000339859 ZMYM4Q5VZL5 1548 aa12.28□□□□□ -0.44
USP54-201ENST00000339859 RAB11FIP3O75154 756 aa12.28□□□□□ -0.44
USP54-201ENST00000339859 CCDC152Q4G0S7 254 aa12.28□□□□□ -0.44
USP54-201ENST00000339859 TRAPPC3LQ5T215 181 aa12.28□□□□□ -0.44
USP54-201ENST00000339859 AEBP1Q8IUX7 1158 aa12.27□□□□□ -0.44
USP54-201ENST00000339859 SLF2Q8IX21 1173 aa12.27□□□□□ -0.44
USP54-201ENST00000339859 CCDC85AQ96PX6 553 aaPredicted RBP12.27□□□□□ -0.44
USP54-201ENST00000339859 FAM83GA6ND36 823 aa12.27□□□□□ -0.44
USP54-201ENST00000339859 PSMA5P28066 241 aa12.27□□□□□ -0.44
USP54-201ENST00000339859 RAI14Q9P0K7 980 aa12.27□□□□□ -0.44
USP54-201ENST00000339859 PARD3Q8TEW0 1356 aa12.27□□□□□ -0.45
USP54-201ENST00000339859 FLIIQ13045 1269 aa12.27□□□□□ -0.45
USP54-201ENST00000339859 CARD14Q9BXL6 1004 aa12.27□□□□□ -0.45
USP54-201ENST00000339859 SBNO2Q9Y2G9 1366 aa12.27□□□□□ -0.45
USP54-201ENST00000339859 CDC42BPGQ6DT37 1551 aa12.27□□□□□ -0.45
USP54-201ENST00000339859 NPC1L1Q9UHC9 1359 aa12.27□□□□□ -0.45
USP54-201ENST00000339859 NFATC2IPQ8NCF5 419 aa12.26□□□□□ -0.45
USP54-201ENST00000339859 IKQ13123 557 aaPredicted RBP12.26□□□□□ -0.45
USP54-201ENST00000339859 DZIP3Q86Y13 1208 aaKnown RBP12.26□□□□□ -0.45
USP54-201ENST00000339859 SOS1Q07889 1333 aaPredicted RBP12.26□□□□□ -0.45
USP54-201ENST00000339859 APBA3O96018 575 aa12.26□□□□□ -0.45
USP54-201ENST00000339859 PTMAP06454 111 aaKnown RBP12.26□□□□□ -0.45
USP54-201ENST00000339859 UTP14AQ9BVJ6 771 aaKnown RBP12.26□□□□□ -0.45
USP54-201ENST00000339859 SLC39A6Q13433 755 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 ANKRD13DQ6ZTN6 518 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 LRP2BPQ9P2M1 347 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 ADGRL3Q9HAR2 1447 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 NRDCO43847 1150 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 SAMD1Q6SPF0 538 aaPredicted RBP12.25□□□□□ -0.45
USP54-201ENST00000339859 ALKQ9UM73 1620 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 NOP58Q9Y2X3 529 aaKnown RBP12.25□□□□□ -0.45
USP54-201ENST00000339859 RTL1A6NKG5 1358 aa12.25□□□□□ -0.45
USP54-201ENST00000339859 ZNF219Q9P2Y4 722 aaPredicted RBP12.25□□□□□ -0.45
USP54-201ENST00000339859 GNPATO15228 680 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 FKBP4Q02790 459 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP54-201ENST00000339859 LRRIQ1Q96JM4 1722 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 ZSCAN29Q8IWY8 852 aaPredicted RBP12.24□□□□□ -0.45
USP54-201ENST00000339859 LAMC1P11047 1609 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 FER1L4A9Z1Z3 1794 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 CHAF1AQ13111 956 aaPredicted RBP12.24□□□□□ -0.45
USP54-201ENST00000339859 CCDC184Q52MB2 194 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 BABAM1Q9NWV8 329 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 NIP7Q9Y221 180 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP54-201ENST00000339859 C6orf229H3BNL8 230 aa12.24□□□□□ -0.45
USP54-201ENST00000339859 SF3A1Q15459 793 aaKnown RBP12.24□□□□□ -0.45
USP54-201ENST00000339859 PPRC1Q5VV67 1664 aaKnown RBP12.24□□□□□ -0.45
USP54-201ENST00000339859 TPTE2Q6XPS3 522 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms