RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 ZSCAN25Q6NSZ9 544 aa11.48□□□□□ -0.57
PTCHD4-201ENST00000339488 LUZP1Q86V48 1076 aa11.48□□□□□ -0.57
PTCHD4-201ENST00000339488 FBXO18Q8NFZ0 1043 aa11.48□□□□□ -0.57
PTCHD4-201ENST00000339488 CWC15Q9P013 229 aaKnown RBP11.48□□□□□ -0.57
PTCHD4-201ENST00000339488 CCDC9Q9Y3X0 531 aaKnown RBP11.48□□□□□ -0.57
PTCHD4-201ENST00000339488 IBSPP21815 317 aaPredicted RBP11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 ARHGAP29Q52LW3 1261 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 MCTP2Q6DN12 878 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 REXO1L1PQ8IX06 675 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 CACTINQ8WUQ7 758 aaKnown RBP11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 ERO1AQ96HE7 468 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 CNPY2Q9Y2B0 182 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 CCDC183Q5T5S1 534 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 MED4Q9NPJ6 270 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 KNSTRNQ9Y448 316 aa11.47□□□□□ -0.57
PTCHD4-201ENST00000339488 SASH3O75995 380 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 H2AFXP16104 143 aaPredicted RBP11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 MAGEA9P43362 315 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 GSCP56915 257 aaPredicted RBP11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 CCDC144BQ3MJ40 725 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 PLEKHO1Q53GL0 409 aaPredicted RBP11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 CCDC144CPQ8IYA2 1237 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 BORCS6Q96GS4 357 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 SLU7O95391 586 aaKnown RBP11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 TRIM27P14373 513 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 MCCP23508 829 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 TPM4P67936 248 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 HDAC1Q13547 482 aaPredicted RBP11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 MAP9Q49MG5 647 aa11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 CWC22Q9HCG8 908 aaKnown RBP11.46□□□□□ -0.57
PTCHD4-201ENST00000339488 ZNF644Q9H582 1327 aaPredicted RBP11.46□□□□□ -0.58
PTCHD4-201ENST00000339488 ZKSCAN2Q63HK3 967 aa11.46□□□□□ -0.58
PTCHD4-201ENST00000339488 NAIF1Q69YI7 327 aaPredicted RBP11.46□□□□□ -0.58
PTCHD4-201ENST00000339488 CEP120Q8N960 986 aa11.46□□□□□ -0.58
PTCHD4-201ENST00000339488 ZCCHC11Q5TAX3 1644 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 SPAG9O60271 1321 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 EHBP1L1Q8N3D4 1523 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 FIBPO43427 364 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 NOM1Q5C9Z4 860 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 GOLGA5Q8TBA6 731 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 TSR2Q969E8 191 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 PZPP20742 1482 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 BRD1O95696 1058 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 RBM5P52756 815 aaKnown RBP eCLIP11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 PTPN14Q15678 1187 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 CCDC27Q2M243 656 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 TMEM57Q8N5G2 664 aa11.45□□□□□ -0.58
PTCHD4-201ENST00000339488 KIF1CO43896 1103 aaKnown RBP11.44□□□□□ -0.58
PTCHD4-201ENST00000339488 GSPT1P15170 499 aaKnown RBP11.44□□□□□ -0.58
PTCHD4-201ENST00000339488 GPS2Q13227 327 aa11.44□□□□□ -0.58
PTCHD4-201ENST00000339488 HTATSF1O43719 755 aaKnown RBP11.44□□□□□ -0.58
PTCHD4-201ENST00000339488 UHRF1BP1LA0JNW5 1464 aa11.44□□□□□ -0.58
PTCHD4-201ENST00000339488 ST18O60284 1047 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 CDC45O75419 566 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 MNAT1P51948 309 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 TMCO3Q6UWJ1 677 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 TRIM5Q9C035 493 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 MX1P20591 662 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 INHBEP58166 350 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 CAMK4Q16566 473 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 SLFNL1Q499Z3 407 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 TMX3Q96JJ7 454 aa11.43□□□□□ -0.58
PTCHD4-201ENST00000339488 TPM3P06753 285 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 DHX8Q14562 1220 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 MICALL1Q8N3F8 863 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 TESK2Q96S53 571 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 RAI14Q9P0K7 980 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 SUPT6HQ7KZ85 1726 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 CASTP20810 708 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 SMC1AQ14683 1233 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 ISM2Q6H9L7 571 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 SRRTQ9BXP5 876 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 MAGI2Q86UL8 1455 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 ACTN2P35609 894 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 MMS22LQ6ZRQ5 1243 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 PIK3R5Q8WYR1 880 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 FUCA2Q9BTY2 467 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 ADAM21Q9UKJ8 722 aa11.42□□□□□ -0.58
PTCHD4-201ENST00000339488 TCHHQ07283 1943 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 H3BQF6 201 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 NEBLO76041 1014 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 ZRANB2O95218 330 aaKnown RBP eCLIP11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 PAX7P23759 505 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 NEK4P51957 841 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 MNS1Q8NEH6 495 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 KAT2BQ92831 832 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 MPHOSPH10O00566 681 aaKnown RBP11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 PPP1R12AO14974 1030 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 CT47B1P0C2W7 299 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 ARMC3Q5W041 872 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 ZNF513Q8N8E2 541 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 DNAJC5Q9H3Z4 198 aa11.41□□□□□ -0.58
PTCHD4-201ENST00000339488 DNAAF4Q8WXU2 420 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 AK7Q96M32 723 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 COL17A1Q9UMD9 1497 aaPredicted RBP11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 CPLX2Q6PUV4 134 aaKnown RBP11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 LEKR1Q6ZMV7 388 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 CKAP2LQ8IYA6 745 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 PPM1EQ8WY54 764 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms